Wall clock time and date at job start Tue Mar 31 2020 08:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 C 1.53003 * 109.47391 * 239.99807 * 2 1 3 5 5 N 1.46504 * 109.47062 * 119.99680 * 2 1 3 6 6 C 1.34584 * 125.74544 * 75.00110 * 5 2 1 7 7 N 1.30871 * 107.62397 * 179.97438 * 6 5 2 8 8 C 1.34548 * 107.26978 * 359.97438 * 7 6 5 9 9 C 1.47871 * 126.04956 * 180.26421 * 8 7 6 10 10 O 1.21556 * 120.00041 * 173.59507 * 9 8 7 11 11 N 1.34773 * 119.99842 * 353.59552 * 9 8 7 12 12 C 1.46492 * 120.00289 * 4.26542 * 11 9 8 13 13 C 1.50703 * 109.47225 * 83.49184 * 12 11 9 14 14 H 1.08006 * 119.99635 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00207 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99764 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99860 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46996 * 90.00155 * 17 15 13 19 19 H 1.48502 * 109.46609 * 209.99998 * 17 15 13 20 20 H 1.48500 * 109.47147 * 329.99812 * 17 15 13 21 21 C 1.46505 * 119.99712 * 184.26974 * 11 9 8 22 22 C 1.52996 * 109.47134 * 94.90458 * 21 11 9 23 23 C 1.47198 * 109.47150 * 179.97438 * 22 21 11 24 24 N 9.02499 * 131.63104 * 142.86139 * 5 1 2 25 25 N 1.28845 * 125.74813 * 254.97689 * 5 2 1 26 26 H 1.08996 * 109.47052 * 300.00513 * 1 2 3 27 27 H 1.09003 * 109.46878 * 60.00254 * 1 2 3 28 28 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47234 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46995 * 299.99674 * 3 2 1 31 31 H 1.08996 * 109.47534 * 59.99783 * 3 2 1 32 32 H 1.09005 * 109.46683 * 300.00288 * 4 2 1 33 33 H 1.08994 * 109.46943 * 59.99550 * 4 2 1 34 34 H 1.08997 * 109.47587 * 180.02562 * 4 2 1 35 35 H 1.08000 * 126.19086 * 359.97438 * 6 5 2 36 36 H 1.08999 * 109.47206 * 203.49327 * 12 11 9 37 37 H 1.08998 * 109.47304 * 323.49287 * 12 11 9 38 38 H 0.96998 * 119.99573 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.46798 * 214.90571 * 21 11 9 40 40 H 1.08998 * 109.46847 * 334.90416 * 21 11 9 41 41 H 1.08999 * 109.47370 * 299.99762 * 22 21 11 42 42 H 1.09002 * 109.47754 * 60.00104 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0139 -2.0220 1.3923 7 7 2.5283 -2.2503 2.5738 8 6 2.8507 -1.0575 3.1063 9 6 3.4673 -0.8342 4.4317 10 8 3.8200 0.2825 4.7576 11 7 3.6382 -1.8688 5.2782 12 6 3.2999 -3.2286 4.8509 13 6 4.4543 -3.8146 4.0796 14 1 5.3502 -3.2322 3.9229 15 6 4.3663 -5.0939 3.5729 16 7 5.3736 -5.6050 2.8993 17 14 2.8164 -6.1010 3.8432 18 1 1.8684 -5.8600 2.7258 19 1 3.1659 -7.5434 3.8935 20 1 2.1829 -5.7001 5.1251 21 6 4.1623 -1.6336 6.6260 22 6 2.9980 -1.4931 7.6086 23 6 3.5246 -1.2574 8.9628 24 7 3.9291 -1.0750 10.0083 25 7 2.5248 -0.1255 2.2376 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2076 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6514 -2.7674 0.6999 36 1 3.0979 -3.8450 5.7269 37 1 2.4151 -3.2000 4.2149 38 1 5.3118 -6.5052 2.5432 39 1 4.7896 -2.4738 6.9236 40 1 4.7543 -0.7184 6.6309 41 1 2.3707 -0.6529 7.3110 42 1 2.4059 -2.4083 7.6037 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291511251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:10 Heat of formation + Delta-G solvation = 77.531645 kcal Electronic energy + Delta-G solvation = -25444.108146 eV Core-core repulsion = 21847.528998 eV Total energy + Delta-G solvation = -3596.579148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.32850 -40.70792 -38.15988 -37.91310 -36.85858 -34.53428 -33.58060 -32.66773 -31.60326 -29.54012 -28.41029 -28.34434 -26.57535 -24.62128 -23.93778 -23.50432 -20.90898 -20.35862 -19.08902 -18.41627 -18.22544 -17.59834 -17.33731 -17.14462 -16.15314 -15.86726 -15.65682 -15.64828 -15.04680 -14.93843 -14.79023 -14.48529 -14.18742 -13.99505 -13.65970 -13.55011 -13.37831 -13.23674 -13.17303 -13.01347 -12.80921 -12.71539 -12.59971 -12.34137 -12.26336 -11.96265 -11.91300 -11.81357 -11.56544 -11.21302 -11.17780 -10.81320 -10.47811 -10.34274 -9.48473 -8.07726 -6.08505 0.48802 1.31519 1.33982 1.53546 1.55721 1.63197 1.67933 1.79504 2.13425 2.47036 2.54519 3.08826 3.31134 3.33819 3.38751 3.73338 3.82481 3.85577 3.99457 4.08214 4.13732 4.53523 4.60607 4.64161 4.70043 4.73421 4.81132 4.82499 4.84604 4.85438 4.97414 5.07214 5.12674 5.24873 5.26693 5.31922 5.64260 5.66089 5.73263 5.95134 6.27038 6.54794 6.55739 6.88372 7.06001 7.35855 7.53440 9.10081 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010780 B = 0.005616 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.688984 B = 4984.333194 C = 6895.343160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.155 3.845 3 C -0.145 4.145 4 C -0.157 4.157 5 N -0.286 5.286 6 C 0.176 3.824 7 N -0.464 5.464 8 C 0.118 3.882 9 C 0.613 3.387 10 O -0.572 6.572 11 N -0.572 5.572 12 C 0.204 3.796 13 C -0.498 4.498 14 H 0.013 0.987 15 C 0.023 3.977 16 N -0.959 5.959 17 Si 0.940 3.060 18 H -0.258 1.258 19 H -0.300 1.300 20 H -0.237 1.237 21 C 0.119 3.881 22 C -0.030 4.030 23 C 0.246 3.754 24 N -0.488 5.488 25 N -0.272 5.272 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.048 0.952 35 H 0.251 0.749 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.968 7.990 -9.387 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.075 3.925 3 C -0.202 4.202 4 C -0.215 4.215 5 N -0.084 5.084 6 C -0.119 4.119 7 N -0.188 5.188 8 C -0.160 4.160 9 C 0.398 3.602 10 O -0.450 6.450 11 N -0.302 5.302 12 C 0.083 3.917 13 C -0.536 4.536 14 H 0.031 0.969 15 C -0.174 4.174 16 N -0.601 5.601 17 Si 0.764 3.236 18 H -0.183 1.183 19 H -0.227 1.227 20 H -0.160 1.160 21 C -0.006 4.006 22 C -0.070 4.070 23 C -0.071 4.071 24 N -0.166 5.166 25 N -0.113 5.113 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.142 0.858 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.980 9.057 -7.437 19.019 hybrid contribution 0.202 -0.934 -0.698 1.183 sum -14.779 8.123 -8.135 18.723 Atomic orbital electron populations 1.22247 0.89722 1.04418 1.04549 1.21632 0.96787 0.93984 0.80125 1.21989 1.01135 0.92863 1.04262 1.22300 1.01536 1.02160 0.95540 1.48195 1.40450 1.06438 1.13288 1.27165 1.01265 0.86857 0.96590 1.71723 1.14691 1.24608 1.07792 1.23461 1.07893 0.86452 0.98188 1.16560 0.77885 0.84017 0.81702 1.90702 1.53010 1.24439 1.76866 1.47620 1.61835 1.08126 1.12582 1.20230 0.97613 0.77579 0.96305 1.21218 1.00093 0.98988 1.33337 0.96890 1.25560 0.99147 0.98579 0.94079 1.70095 1.34052 1.16718 1.39190 0.85835 0.80165 0.76539 0.81091 1.18279 1.22728 1.15964 1.21350 0.95408 1.03842 0.79956 1.19700 0.98625 1.07389 0.81331 1.29128 0.92221 0.91350 0.94434 1.81206 1.10126 1.11208 1.14064 1.74114 1.14603 1.26029 0.96544 0.92921 0.86696 0.90464 0.93643 0.87005 0.92481 0.89933 0.86344 0.93252 0.73311 0.93090 0.90151 0.93051 0.88895 0.90145 0.85803 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.72 71.98 0.63 -1.08 16 2 C 0.16 2.65 1.23 3.60 0.00 2.65 16 3 C -0.14 -2.54 8.04 71.98 0.58 -1.96 16 4 C -0.16 -1.94 8.28 71.98 0.60 -1.34 16 5 N -0.29 -7.96 3.17 -311.58 -0.99 -8.95 16 6 C 0.18 5.20 11.71 180.30 2.11 7.31 16 7 N -0.46 -18.25 7.18 -193.03 -1.39 -19.63 16 8 C 0.12 4.89 7.63 137.13 1.05 5.94 16 9 C 0.61 26.31 7.62 86.79 0.66 26.98 16 10 O -0.57 -26.22 16.57 -3.89 -0.06 -26.28 16 11 N -0.57 -22.40 2.47 -829.56 -2.05 -24.45 16 12 C 0.20 8.57 3.85 85.64 0.33 8.90 16 13 C -0.50 -26.56 8.96 25.60 0.23 -26.33 16 14 H 0.01 0.81 8.06 -2.91 -0.02 0.79 16 15 C 0.02 1.22 5.47 84.65 0.46 1.69 16 16 N -0.96 -57.70 13.96 21.45 0.30 -57.40 16 17 Si 0.94 40.00 27.47 68.60 1.88 41.89 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.24 -8.83 6.54 99.48 0.65 -8.18 16 21 C 0.12 3.75 5.42 86.38 0.47 4.22 16 22 C -0.03 -0.68 6.02 28.79 0.17 -0.51 16 23 C 0.25 6.56 15.43 89.44 1.38 7.94 16 24 N -0.49 -15.66 18.54 20.00 0.37 -15.29 16 25 N -0.27 -10.00 11.10 -52.44 -0.58 -10.59 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.21 8.02 -2.39 -0.02 1.19 16 32 H 0.08 0.84 7.34 -2.38 -0.02 0.83 16 33 H 0.12 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.25 5.00 7.53 -2.91 -0.02 4.98 16 36 H 0.05 1.93 7.08 -2.39 -0.02 1.92 16 37 H 0.08 3.36 4.72 -2.39 -0.01 3.34 16 38 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 40 H 0.08 2.70 7.23 -2.39 -0.02 2.68 16 41 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -80.31 359.28 7.13 -73.18 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.97 Total: 13.13 kcal Atomic # 6 Polarization: 25.73 SS G_CDS: 8.67 Total: 34.40 kcal Atomic # 7 Polarization: -131.98 SS G_CDS: -4.34 Total: -136.31 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.88 Total: 41.89 kcal Total: -80.31 7.13 -73.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291511251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.710 kcal (2) G-P(sol) polarization free energy of solvation -80.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds