Wall clock time and date at job start Tue Mar 31 2020 09:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.89090 * 2 1 4 4 C 1.55161 * 111.00884 * 236.11829 * 2 1 3 5 5 C 1.54320 * 102.93984 * 277.39381 * 4 2 1 6 6 H 1.08999 * 110.01366 * 97.29357 * 5 4 2 7 7 C 1.50708 * 109.88072 * 218.38520 * 5 4 2 8 8 C 1.38219 * 120.01060 * 99.26230 * 7 5 4 9 9 C 1.38222 * 120.02447 * 179.97438 * 8 7 5 10 10 C 1.38273 * 120.05235 * 0.02562 * 9 8 7 11 11 C 1.38172 * 120.02279 * 359.95046 * 10 9 8 12 12 C 1.38430 * 120.01074 * 278.98657 * 7 5 4 13 13 F 1.35098 * 120.03032 * 359.97438 * 12 7 5 14 14 N 1.47018 * 107.27580 * 337.79982 * 5 4 2 15 15 C 1.34777 * 125.65319 * 178.90322 * 14 5 4 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 5 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 5 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99923 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00006 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46794 * 89.99626 * 23 21 19 25 25 H 1.48502 * 109.47140 * 209.99610 * 23 21 19 26 26 H 1.48501 * 109.46982 * 329.99723 * 23 21 19 27 27 C 1.47423 * 108.69955 * 359.17380 * 14 5 4 28 28 H 1.09002 * 109.47153 * 183.88063 * 1 2 3 29 29 H 1.09004 * 109.47113 * 303.88092 * 1 2 3 30 30 H 1.08998 * 109.46866 * 63.88063 * 1 2 3 31 31 H 1.08997 * 110.72119 * 159.03011 * 4 2 1 32 32 H 1.08996 * 110.86692 * 35.82173 * 4 2 1 33 33 H 1.08000 * 119.98804 * 359.97438 * 8 7 5 34 34 H 1.08001 * 119.97863 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.98946 * 179.97438 * 10 9 8 36 36 H 1.08003 * 120.01812 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 38 38 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 39 39 H 1.09001 * 109.47194 * 299.99742 * 18 17 15 40 40 H 1.08992 * 109.47399 * 59.99914 * 18 17 15 41 41 H 0.97000 * 119.99684 * 179.97438 * 22 21 19 42 42 H 1.09006 * 110.36725 * 142.73923 * 27 14 5 43 43 H 1.09004 * 110.36765 * 265.05400 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0863 -0.8075 -1.2025 5 6 2.0295 -2.2642 -0.6964 6 1 1.1242 -2.7504 -1.0600 7 6 3.2434 -3.0199 -1.1726 8 6 4.3177 -3.2078 -0.3235 9 6 5.4310 -3.9012 -0.7598 10 6 5.4715 -4.4073 -2.0459 11 6 4.3985 -4.2211 -2.8963 12 6 3.2804 -3.5310 -2.4586 13 9 2.2284 -3.3532 -3.2873 14 7 2.0153 -2.2158 0.7729 15 6 1.9479 -3.2828 1.5935 16 8 1.8928 -4.4020 1.1296 17 6 1.9410 -3.0852 3.0875 18 6 1.8598 -4.4463 3.7815 19 6 1.8536 -4.2488 5.2755 20 1 1.9022 -3.2521 5.6886 21 6 1.7847 -5.3404 6.1150 22 7 1.7798 -5.1680 7.4187 23 14 1.6999 -7.0643 5.4004 24 1 3.0753 -7.5966 5.2274 25 1 0.9403 -7.9458 6.3231 26 1 1.0165 -7.0208 4.0827 27 6 2.0805 -0.8063 1.1999 28 1 -0.3633 -1.0253 0.0696 29 1 -0.3633 0.5729 0.8532 30 1 -0.3633 0.4524 -0.9227 31 1 3.1132 -0.5150 -1.4214 32 1 1.4545 -0.6797 -2.0815 33 1 4.2873 -2.8126 0.6811 34 1 6.2702 -4.0473 -0.0959 35 1 6.3420 -4.9486 -2.3859 36 1 4.4300 -4.6168 -3.9007 37 1 1.0790 -2.4809 3.3701 38 1 2.8563 -2.5770 3.3910 39 1 0.9447 -4.9549 3.4781 40 1 2.7219 -5.0503 3.4989 41 1 1.7309 -5.9360 8.0093 42 1 1.4590 -0.6477 2.0813 43 1 3.1119 -0.5195 1.4056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292102423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:21 Heat of formation + Delta-G solvation = -81.545270 kcal Electronic energy + Delta-G solvation = -25498.675661 eV Core-core repulsion = 21842.985708 eV Total energy + Delta-G solvation = -3655.689953 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.94548 -41.69292 -39.67546 -38.71323 -35.58890 -33.82191 -33.67736 -32.69255 -31.50800 -29.50068 -28.04536 -27.51485 -24.88004 -23.86600 -23.29107 -22.16535 -21.03989 -20.01964 -19.17069 -18.75192 -17.88271 -17.60411 -16.95247 -16.68458 -16.47689 -16.26311 -16.13655 -15.65989 -15.16729 -14.93146 -14.77000 -14.61311 -14.39691 -14.26654 -14.01145 -13.78989 -13.54391 -13.28652 -13.01489 -12.90939 -12.90661 -12.67417 -12.21419 -12.12874 -12.00422 -11.83458 -11.80225 -11.76861 -11.62939 -11.41369 -10.79623 -10.77610 -9.95417 -9.76561 -9.56616 -8.33164 -6.35614 0.14994 0.23696 1.30170 1.32636 1.47689 1.63422 1.93184 2.32865 2.59802 3.02620 3.26075 3.38288 3.52026 3.63070 3.80130 3.92963 4.02025 4.04293 4.20026 4.31764 4.33335 4.41011 4.41901 4.42835 4.64387 4.66781 4.80808 4.88336 4.89580 4.93324 5.02274 5.06483 5.09623 5.11371 5.20142 5.26364 5.31801 5.40379 5.41921 5.45883 5.52275 5.58571 5.91475 6.21940 6.47685 6.70222 7.19669 7.29784 8.82496 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.004511 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.033220 B = 6206.233556 C = 7464.593630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.125 0.875 4 C -0.107 4.107 5 C 0.175 3.825 6 H 0.059 0.941 7 C -0.128 4.128 8 C -0.089 4.089 9 C -0.134 4.134 10 C -0.092 4.092 11 C -0.155 4.155 12 C 0.080 3.920 13 F -0.146 7.146 14 N -0.612 5.612 15 C 0.527 3.473 16 O -0.577 6.577 17 C -0.108 4.108 18 C 0.008 3.992 19 C -0.527 4.527 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.941 5.941 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.266 1.266 27 C 0.091 3.909 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.005 0.995 40 H 0.008 0.992 41 H 0.268 0.732 42 H 0.088 0.912 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 12.428 -22.827 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.143 0.857 4 C -0.145 4.145 5 C 0.071 3.929 6 H 0.077 0.923 7 C -0.130 4.130 8 C -0.108 4.108 9 C -0.152 4.152 10 C -0.110 4.110 11 C -0.174 4.174 12 C 0.060 3.940 13 F -0.124 7.124 14 N -0.346 5.346 15 C 0.318 3.682 16 O -0.456 6.456 17 C -0.147 4.147 18 C -0.030 4.030 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.180 4.180 22 N -0.582 5.582 23 Si 0.758 3.242 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.030 4.030 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.163 0.837 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.385 11.694 -22.867 26.242 hybrid contribution -0.485 -1.215 0.194 1.323 sum 4.900 10.478 -22.673 25.453 Atomic orbital electron populations 1.21781 0.94195 1.01090 1.03122 1.22350 0.96323 1.00093 0.92229 0.85661 1.22746 1.03314 0.89523 0.98920 1.20380 0.93954 0.97805 0.80760 0.92276 1.20209 0.97847 1.01680 0.93247 1.20930 0.92814 0.98171 0.98842 1.21531 0.98621 0.97860 0.97161 1.21363 0.98707 0.98161 0.92766 1.21418 0.92722 1.00647 1.02586 1.17687 0.86013 1.01896 0.88404 1.91446 1.55916 1.93900 1.71162 1.48618 1.73060 1.07376 1.05509 1.20943 0.74565 0.83128 0.89607 1.90659 1.51155 1.25415 1.78398 1.21459 1.04676 1.00278 0.88326 1.19199 0.96145 0.93917 0.93743 1.21381 1.50151 0.94258 0.90662 0.92958 1.25723 0.94294 1.02981 0.94962 1.70010 1.52371 1.32176 1.03625 0.85904 0.79143 0.80387 0.78730 1.19243 1.20225 1.19071 1.22732 1.02682 0.78522 0.99096 0.94961 0.91237 0.90915 0.89266 0.88692 0.86386 0.83741 0.81908 0.82589 0.88367 0.88047 0.97614 0.97388 0.92334 0.89414 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.19 71.98 0.66 -1.50 16 2 C -0.09 -1.26 3.72 -9.48 -0.04 -1.29 16 3 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.11 -1.79 5.96 31.78 0.19 -1.60 16 5 C 0.17 4.53 2.47 44.60 0.11 4.64 16 6 H 0.06 1.81 7.97 -2.39 -0.02 1.79 16 7 C -0.13 -3.52 4.39 -19.82 -0.09 -3.60 16 8 C -0.09 -2.43 8.53 22.26 0.19 -2.24 16 9 C -0.13 -3.04 10.04 22.27 0.22 -2.82 16 10 C -0.09 -1.77 10.04 22.26 0.22 -1.55 16 11 C -0.16 -3.28 10.03 22.31 0.22 -3.05 16 12 C 0.08 2.07 7.25 22.38 0.16 2.23 16 13 F -0.15 -3.84 16.68 44.97 0.75 -3.09 16 14 N -0.61 -17.02 2.16 -792.60 -1.72 -18.73 16 15 C 0.53 19.74 6.40 87.66 0.56 20.30 16 16 O -0.58 -26.77 15.53 -3.02 -0.05 -26.81 16 17 C -0.11 -4.20 4.65 29.85 0.14 -4.06 16 18 C 0.01 0.40 3.33 29.85 0.10 0.50 16 19 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 20 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 21 C 0.02 1.10 5.47 84.65 0.46 1.56 16 22 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 23 Si 0.93 47.30 27.47 68.60 1.88 49.19 16 24 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.27 -13.61 6.54 99.48 0.65 -12.96 16 27 C 0.09 1.72 6.13 86.78 0.53 2.25 16 28 H 0.03 0.65 7.91 -2.39 -0.02 0.63 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.34 7.84 -2.39 -0.02 1.32 16 32 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 33 H 0.12 3.36 6.56 -2.91 -0.02 3.34 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.10 3.53 7.84 -2.39 -0.02 3.52 16 38 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.01 0.30 7.16 -2.39 -0.02 0.28 16 40 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.09 1.63 7.38 -2.38 -0.02 1.61 16 43 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -75.54 353.25 6.01 -69.52 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.94 Total: 9.02 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 3.90 Total: -20.48 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -1.42 Total: -77.34 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.75 Total: -3.09 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.88 Total: 49.19 kcal Total: -75.54 6.01 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292102423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.021 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds