Wall clock time and date at job start Tue Mar 31 2020 09:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.88519 * 2 1 4 4 C 1.55407 * 111.07029 * 236.21794 * 2 1 3 5 5 C 1.54320 * 102.82579 * 206.51191 * 4 2 1 6 6 H 1.09004 * 109.87900 * 262.52492 * 5 4 2 7 7 C 1.50698 * 109.88149 * 141.52017 * 5 4 2 8 8 C 1.38227 * 120.01020 * 265.31569 * 7 5 4 9 9 C 1.38219 * 120.02402 * 180.25735 * 8 7 5 10 10 C 1.38271 * 120.05287 * 359.44048 * 9 8 7 11 11 C 1.38173 * 120.02098 * 0.55595 * 10 9 8 12 12 C 1.38435 * 120.01579 * 85.29142 * 7 5 4 13 13 F 1.35097 * 120.02386 * 0.04303 * 12 7 5 14 14 N 1.47022 * 107.40410 * 22.02040 * 5 4 2 15 15 C 1.34770 * 125.64800 * 181.09811 * 14 5 4 16 16 O 1.21282 * 120.00182 * 0.02562 * 15 14 5 17 17 C 1.50704 * 119.99940 * 180.02562 * 15 14 5 18 18 C 1.53007 * 109.46898 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46437 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00679 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99429 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00181 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00213 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47037 * 90.00089 * 23 21 19 25 25 H 1.48498 * 109.46902 * 209.99762 * 23 21 19 26 26 H 1.48493 * 109.47186 * 329.99929 * 23 21 19 27 27 C 1.47424 * 108.70389 * 1.13938 * 14 5 4 28 28 H 1.09002 * 109.47291 * 297.57279 * 1 2 3 29 29 H 1.09000 * 109.47369 * 57.57190 * 1 2 3 30 30 H 1.09000 * 109.47384 * 177.57189 * 1 2 3 31 31 H 1.08996 * 110.85109 * 88.14575 * 4 2 1 32 32 H 1.08996 * 110.69191 * 324.80060 * 4 2 1 33 33 H 1.08002 * 119.98464 * 359.97129 * 8 7 5 34 34 H 1.08000 * 119.97200 * 179.72235 * 9 8 7 35 35 H 1.07997 * 119.98745 * 180.27825 * 10 9 8 36 36 H 1.08004 * 120.01046 * 179.74457 * 11 10 9 37 37 H 1.08999 * 109.46673 * 299.99907 * 17 15 14 38 38 H 1.08997 * 109.47323 * 60.00286 * 17 15 14 39 39 H 1.08999 * 109.47200 * 299.99360 * 18 17 15 40 40 H 1.08997 * 109.47083 * 59.99915 * 18 17 15 41 41 H 0.96994 * 120.00775 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.36648 * 94.70230 * 27 14 5 43 43 H 1.08996 * 110.36648 * 216.92436 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0887 -0.8063 -1.2053 5 6 3.4683 -1.2732 -0.6952 6 1 4.2451 -0.6005 -1.0589 7 6 3.7424 -2.6767 -1.1706 8 6 3.4430 -3.7532 -0.3567 9 6 3.6992 -5.0403 -0.7903 10 6 4.2445 -5.2534 -2.0430 11 6 4.5445 -4.1789 -2.8583 12 6 4.2936 -2.8885 -2.4227 13 9 4.5870 -1.8372 -3.2188 14 7 3.4275 -1.2419 0.7741 15 6 4.4479 -1.5597 1.5952 16 8 5.5134 -1.9075 1.1318 17 6 4.2649 -1.4830 3.0891 18 6 5.5655 -1.8917 3.7838 19 6 5.3826 -1.8144 5.2777 20 1 4.4337 -1.5051 5.6904 21 6 6.4266 -2.1395 6.1176 22 7 6.2670 -2.0725 7.4213 23 14 8.0677 -2.6751 5.4039 24 1 8.9306 -1.4840 5.1987 25 1 8.7336 -3.6128 6.3433 26 1 7.8436 -3.3541 4.1024 27 6 2.0853 -0.8061 1.2006 28 1 -0.3634 0.4757 0.9110 29 1 -0.3634 0.5511 -0.8674 30 1 -0.3634 -1.0267 -0.0435 31 1 2.1974 -0.1681 -2.0821 32 1 1.4497 -1.6612 -1.4262 33 1 3.0131 -3.5881 0.6201 34 1 3.4692 -5.8805 -0.1520 35 1 4.4401 -6.2598 -2.3825 36 1 4.9742 -4.3453 -3.8351 37 1 4.0078 -0.4622 3.3716 38 1 3.4635 -2.1568 3.3921 39 1 5.8231 -2.9125 3.5013 40 1 6.3666 -1.2177 3.4807 41 1 7.0015 -2.3008 8.0123 42 1 1.4523 -1.6702 1.4026 43 1 2.1552 -0.1729 2.0850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292102427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:24 Heat of formation + Delta-G solvation = -82.910416 kcal Electronic energy + Delta-G solvation = -25366.024105 eV Core-core repulsion = 21710.274955 eV Total energy + Delta-G solvation = -3655.749150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.95471 -41.63373 -39.69787 -38.64020 -35.59176 -34.01120 -33.68666 -32.71282 -31.52991 -29.67938 -28.04808 -27.17453 -24.81146 -23.86726 -23.25641 -21.96103 -21.32086 -20.07147 -19.15045 -18.72813 -18.03420 -17.50652 -16.90403 -16.79136 -16.59486 -16.34770 -16.23923 -15.55593 -15.18286 -14.86740 -14.73334 -14.64381 -14.27123 -14.20668 -14.00403 -13.62563 -13.58166 -13.33844 -13.09584 -13.04592 -12.93858 -12.51103 -12.30090 -12.12943 -12.00708 -11.93791 -11.80987 -11.65160 -11.58025 -11.41310 -10.79733 -10.79530 -9.98036 -9.77941 -9.57569 -8.33113 -6.35673 0.14507 0.22796 1.30550 1.32723 1.47734 1.62059 1.91146 2.32940 2.59477 3.02612 3.25548 3.36566 3.52070 3.61365 3.79384 3.91245 3.99119 4.06635 4.17134 4.32213 4.34141 4.39835 4.41486 4.48415 4.61083 4.65361 4.82018 4.85828 4.87747 4.92364 4.99618 5.04759 5.09606 5.13550 5.24899 5.30635 5.32793 5.40357 5.41140 5.48997 5.49953 5.58413 5.90996 6.21816 6.46036 6.70111 7.18120 7.29733 8.82525 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.004450 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.447595 B = 6290.262177 C = 7578.199664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.089 0.911 4 C -0.106 4.106 5 C 0.172 3.828 6 H 0.061 0.939 7 C -0.127 4.127 8 C -0.090 4.090 9 C -0.133 4.133 10 C -0.092 4.092 11 C -0.155 4.155 12 C 0.079 3.921 13 F -0.146 7.146 14 N -0.614 5.614 15 C 0.527 3.473 16 O -0.577 6.577 17 C -0.108 4.108 18 C 0.008 3.992 19 C -0.527 4.527 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.941 5.941 23 Si 0.934 3.066 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.264 1.264 27 C 0.093 3.907 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.009 0.991 40 H 0.005 0.995 41 H 0.268 0.732 42 H 0.085 0.915 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 -1.129 -22.813 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.144 4.144 5 C 0.068 3.932 6 H 0.080 0.920 7 C -0.129 4.129 8 C -0.109 4.109 9 C -0.151 4.151 10 C -0.110 4.110 11 C -0.174 4.174 12 C 0.059 3.941 13 F -0.125 7.125 14 N -0.348 5.348 15 C 0.318 3.682 16 O -0.456 6.456 17 C -0.147 4.147 18 C -0.030 4.030 19 C -0.565 4.565 20 H 0.071 0.929 21 C -0.180 4.180 22 N -0.582 5.582 23 Si 0.759 3.241 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.189 1.189 27 C -0.029 4.029 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.391 -1.305 -22.851 26.517 hybrid contribution 1.311 0.062 0.179 1.325 sum -12.079 -1.243 -22.672 25.719 Atomic orbital electron populations 1.21667 0.91538 1.02880 1.03166 1.22397 0.97687 0.98939 0.92298 0.89308 1.22799 0.91858 1.00848 0.98878 1.20424 1.00076 0.91974 0.80752 0.92048 1.20199 1.01691 0.97212 0.93791 1.20934 0.98780 0.92312 0.98831 1.21539 0.99345 0.97043 0.97161 1.21370 0.96619 0.99901 0.93131 1.21421 1.02935 0.90351 1.02699 1.17712 1.02059 0.84692 0.89610 1.91444 1.91499 1.56562 1.72997 1.48642 1.13346 1.67239 1.05557 1.20972 0.82273 0.75359 0.89632 1.90658 1.27918 1.48576 1.78427 1.21464 1.00757 1.04281 0.88243 1.19203 0.94019 0.96053 0.93750 1.21379 0.99369 1.45072 0.90651 0.92948 1.25725 1.02195 0.95081 0.94962 1.70006 1.33918 1.50644 1.03615 0.85899 0.80349 0.79098 0.78785 1.19547 1.20102 1.18889 1.22766 0.81489 0.99517 0.99105 0.91308 0.91038 0.91866 0.88609 0.89364 0.86179 0.83577 0.81882 0.82645 0.88258 0.88067 0.97274 0.97684 0.92324 0.89728 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.30 71.98 0.67 -0.66 16 2 C -0.09 -1.37 3.64 -9.31 -0.03 -1.40 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -1.81 5.96 31.87 0.19 -1.62 16 5 C 0.17 4.49 2.82 44.59 0.13 4.61 16 6 H 0.06 1.87 7.84 -2.39 -0.02 1.85 16 7 C -0.13 -3.51 4.30 -19.82 -0.09 -3.60 16 8 C -0.09 -2.43 8.70 22.26 0.19 -2.24 16 9 C -0.13 -2.99 10.04 22.27 0.22 -2.77 16 10 C -0.09 -1.78 10.04 22.26 0.22 -1.56 16 11 C -0.16 -3.34 10.03 22.31 0.22 -3.12 16 12 C 0.08 2.09 7.25 22.37 0.16 2.25 16 13 F -0.15 -3.96 16.59 44.97 0.75 -3.21 16 14 N -0.61 -17.32 2.14 -792.19 -1.69 -19.01 16 15 C 0.53 19.88 6.67 87.66 0.58 20.47 16 16 O -0.58 -26.90 15.68 -3.04 -0.05 -26.95 16 17 C -0.11 -4.21 4.64 29.85 0.14 -4.07 16 18 C 0.01 0.39 3.33 29.85 0.10 0.49 16 19 C -0.53 -30.52 9.66 25.60 0.25 -30.28 16 20 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 21 C 0.02 1.09 5.47 84.65 0.46 1.56 16 22 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 23 Si 0.93 47.32 27.47 68.60 1.88 49.21 16 24 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.26 -13.45 6.54 99.48 0.65 -12.80 16 27 C 0.09 1.80 6.17 86.86 0.54 2.33 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.38 7.72 -2.39 -0.02 1.36 16 33 H 0.12 3.31 6.89 -2.91 -0.02 3.29 16 34 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.10 3.57 7.85 -2.39 -0.02 3.55 16 38 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 40 H 0.00 0.25 7.53 -2.39 -0.02 0.24 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 42 H 0.08 1.43 8.04 -2.39 -0.02 1.41 16 43 H 0.09 1.66 7.47 -2.39 -0.02 1.64 16 Total: -1.00 -75.41 354.40 6.09 -69.33 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.94 Total: 8.84 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 3.96 Total: -19.59 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -1.39 Total: -77.63 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.75 Total: -3.21 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.88 Total: 49.21 kcal Total: -75.41 6.09 -69.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292102427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.584 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds