Wall clock time and date at job start Tue Mar 31 2020 09:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.89010 * 2 1 4 4 C 1.55155 * 111.00881 * 236.11071 * 2 1 3 5 5 C 1.54314 * 102.94429 * 277.43452 * 4 2 1 6 6 H 1.08996 * 109.89068 * 97.37575 * 5 4 2 7 7 C 1.50702 * 109.88090 * 218.39025 * 5 4 2 8 8 C 1.38271 * 119.98277 * 259.99448 * 7 5 4 9 9 C 1.38229 * 120.05108 * 179.74201 * 8 7 5 10 10 C 1.38223 * 120.02024 * 0.25898 * 9 8 7 11 11 C 1.38433 * 119.97726 * 359.97438 * 10 9 8 12 12 F 1.35105 * 120.02401 * 179.97438 * 11 10 9 13 13 C 1.38170 * 119.99204 * 80.25338 * 7 5 4 14 14 N 1.47022 * 107.27230 * 337.80358 * 5 4 2 15 15 C 1.34774 * 125.65066 * 178.92222 * 14 5 4 16 16 O 1.21286 * 120.00325 * 0.02562 * 15 14 5 17 17 C 1.50705 * 120.00290 * 179.97438 * 15 14 5 18 18 C 1.52995 * 109.47170 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47170 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99434 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00041 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00386 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46743 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46774 * 120.00006 * 23 21 19 26 26 H 1.48494 * 109.47474 * 240.00381 * 23 21 19 27 27 C 1.47425 * 108.70349 * 358.94320 * 14 5 4 28 28 H 1.08995 * 109.47658 * 183.88071 * 1 2 3 29 29 H 1.08999 * 109.47510 * 303.88788 * 1 2 3 30 30 H 1.09001 * 109.46849 * 63.88827 * 1 2 3 31 31 H 1.08997 * 110.72121 * 159.06250 * 4 2 1 32 32 H 1.09003 * 110.86544 * 35.86916 * 4 2 1 33 33 H 1.08002 * 119.97858 * 0.02817 * 8 7 5 34 34 H 1.07994 * 119.98968 * 180.27807 * 9 8 7 35 35 H 1.08004 * 120.00504 * 179.97438 * 10 9 8 36 36 H 1.08004 * 120.01123 * 359.97438 * 13 7 5 37 37 H 1.08997 * 109.46789 * 300.00173 * 17 15 14 38 38 H 1.09004 * 109.46906 * 60.00089 * 17 15 14 39 39 H 1.08997 * 109.47411 * 299.99799 * 18 17 15 40 40 H 1.09004 * 109.47128 * 60.00232 * 18 17 15 41 41 H 0.96999 * 120.00049 * 179.97438 * 22 21 19 42 42 H 1.09004 * 110.36560 * 265.28857 * 27 14 5 43 43 H 1.08994 * 110.46154 * 143.01581 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0862 -0.8076 -1.2024 5 6 2.0285 -2.2644 -0.6966 6 1 1.1232 -2.7485 -1.0629 7 6 3.2422 -3.0205 -1.1724 8 6 3.1498 -3.8546 -2.2713 9 6 4.2634 -4.5447 -2.7121 10 6 5.4695 -4.4057 -2.0513 11 6 5.5619 -3.5747 -0.9480 12 9 6.7402 -3.4386 -0.3011 13 6 4.4455 -2.8842 -0.5071 14 7 2.0137 -2.2161 0.7727 15 6 1.9458 -3.2832 1.5931 16 8 1.8907 -4.4025 1.1290 17 6 1.9395 -3.0860 3.0872 18 6 1.8562 -4.4471 3.7809 19 6 1.8506 -4.2499 5.2750 20 1 1.9009 -3.2533 5.6883 21 6 1.7801 -5.3415 6.1142 22 7 1.7183 -6.5550 5.6109 23 14 1.7738 -5.0971 7.9662 24 1 1.8514 -3.6464 8.2742 25 1 0.5216 -5.6572 8.5350 26 1 2.9427 -5.7931 8.5614 27 6 2.0851 -0.8070 1.2002 28 1 -0.3634 -1.0252 0.0695 29 1 -0.3634 0.5730 0.8531 30 1 -0.3633 0.4523 -0.9228 31 1 3.1133 -0.5156 -1.4210 32 1 1.4549 -0.6793 -2.0816 33 1 2.2079 -3.9634 -2.7885 34 1 4.1912 -5.1924 -3.5732 35 1 6.3393 -4.9454 -2.3957 36 1 4.5164 -2.2356 0.3536 37 1 2.8552 -2.5786 3.3905 38 1 1.0780 -2.4811 3.3702 39 1 0.9403 -4.9541 3.4776 40 1 2.7175 -5.0524 3.4980 41 1 1.6692 -7.3230 6.2014 42 1 3.1181 -0.5238 1.4025 43 1 1.4682 -0.6452 2.0840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292187072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:31 Heat of formation + Delta-G solvation = -88.316803 kcal Electronic energy + Delta-G solvation = -25234.301396 eV Core-core repulsion = 21578.317807 eV Total energy + Delta-G solvation = -3655.983589 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.96038 -41.65313 -39.72950 -38.59506 -35.60873 -33.71740 -33.53038 -32.44723 -31.54968 -29.46018 -27.81521 -27.45425 -24.95026 -23.93913 -23.46600 -22.28208 -20.97769 -19.99679 -18.90038 -18.50059 -17.74879 -17.19276 -17.12656 -16.78780 -16.65434 -16.50507 -16.10665 -15.74508 -15.04312 -14.83305 -14.58783 -14.40950 -14.30140 -14.23821 -13.96343 -13.79732 -13.36739 -13.14236 -12.91471 -12.85129 -12.82772 -12.72318 -12.46091 -12.21526 -11.98703 -11.85404 -11.67480 -11.64515 -11.56000 -11.30550 -10.72955 -10.60275 -9.97869 -9.72712 -9.56473 -8.20304 -6.34822 0.14366 0.21837 1.40134 1.41989 1.55239 1.69353 2.00745 2.41280 2.60208 3.12751 3.19981 3.48694 3.58669 3.69056 3.80064 4.00458 4.03038 4.08587 4.21713 4.28282 4.40922 4.44593 4.46837 4.50669 4.68445 4.71808 4.78519 4.89672 4.93582 4.99879 5.03998 5.09738 5.15484 5.17129 5.25261 5.29926 5.36630 5.45654 5.52040 5.57804 5.58606 5.81740 5.91137 6.14590 6.51241 6.83611 7.26701 7.35867 8.92796 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.004246 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.279931 B = 6593.358941 C = 7911.889444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.122 0.878 4 C -0.106 4.106 5 C 0.169 3.831 6 H 0.078 0.922 7 C -0.063 4.063 8 C -0.125 4.125 9 C -0.087 4.087 10 C -0.163 4.163 11 C 0.070 3.930 12 F -0.153 7.153 13 C -0.153 4.153 14 N -0.613 5.613 15 C 0.525 3.475 16 O -0.579 6.579 17 C -0.112 4.112 18 C 0.046 3.954 19 C -0.542 4.542 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.938 5.938 23 Si 0.974 3.026 24 H -0.252 1.252 25 H -0.278 1.278 26 H -0.281 1.281 27 C 0.089 3.911 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.152 0.848 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.101 0.899 39 H -0.018 1.018 40 H -0.023 1.023 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 17.032 -19.003 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.140 0.860 4 C -0.144 4.144 5 C 0.066 3.934 6 H 0.096 0.904 7 C -0.064 4.064 8 C -0.144 4.144 9 C -0.104 4.104 10 C -0.182 4.182 11 C 0.051 3.949 12 F -0.132 7.132 13 C -0.172 4.172 14 N -0.347 5.347 15 C 0.315 3.685 16 O -0.458 6.458 17 C -0.152 4.152 18 C 0.008 3.992 19 C -0.580 4.580 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.798 3.202 24 H -0.175 1.175 25 H -0.204 1.204 26 H -0.207 1.207 27 C -0.032 4.032 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.140 0.860 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.001 0.999 40 H -0.004 1.004 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.813 16.226 -19.113 25.138 hybrid contribution 0.406 -0.865 1.318 1.628 sum 2.219 15.362 -17.795 23.613 Atomic orbital electron populations 1.21763 0.93888 1.01247 1.03137 1.22377 0.96483 0.99883 0.92273 0.86005 1.22792 1.03387 0.89200 0.99031 1.20661 0.94314 0.98096 0.80316 0.90432 1.20134 0.94034 0.97100 0.95158 1.21393 1.00210 0.96047 0.96708 1.21360 0.90868 0.98193 1.00003 1.21428 1.01124 0.99969 0.95631 1.18030 0.81384 1.00866 0.94661 1.91455 1.45727 1.94926 1.81082 1.20923 0.92389 1.02405 1.01449 1.48658 1.73118 1.07034 1.05909 1.20969 0.74564 0.83196 0.89751 1.90659 1.51134 1.25656 1.78368 1.21583 1.04056 1.00639 0.88894 1.18656 0.94446 0.91561 0.94494 1.21714 1.50631 0.93743 0.91915 0.90680 1.26143 0.94526 0.94696 1.04983 1.70190 1.51311 0.99146 1.37177 0.85266 0.77637 0.79196 0.78108 1.17526 1.20403 1.20655 1.22763 1.02131 0.78840 0.99508 0.94668 0.91651 0.90514 0.89635 0.87346 0.83301 0.81678 0.83021 0.86028 0.88748 0.88100 0.99915 1.00439 0.92829 0.90381 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.09 -1.16 3.72 -9.40 -0.03 -1.20 16 3 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.49 5.96 31.78 0.19 -1.30 16 5 C 0.17 4.03 2.74 44.59 0.12 4.15 16 6 H 0.08 1.95 8.03 -2.39 -0.02 1.93 16 7 C -0.06 -1.69 4.09 -19.87 -0.08 -1.77 16 8 C -0.13 -2.90 9.67 22.28 0.22 -2.68 16 9 C -0.09 -1.82 10.04 22.26 0.22 -1.60 16 10 C -0.16 -3.98 10.03 22.31 0.22 -3.76 16 11 C 0.07 2.09 7.30 22.37 0.16 2.25 16 12 F -0.15 -4.90 17.27 44.97 0.78 -4.12 16 13 C -0.15 -4.57 9.12 22.31 0.20 -4.37 16 14 N -0.61 -17.64 2.28 -792.19 -1.80 -19.45 16 15 C 0.52 21.49 7.45 87.66 0.65 22.14 16 16 O -0.58 -29.52 15.82 -3.05 -0.05 -29.57 16 17 C -0.11 -4.78 4.65 29.85 0.14 -4.64 16 18 C 0.05 2.67 4.26 29.85 0.13 2.79 16 19 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 20 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 21 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 22 N -0.94 -60.80 13.29 21.44 0.28 -60.52 16 23 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 24 H -0.25 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 C 0.09 1.74 6.15 86.86 0.53 2.28 16 28 H 0.03 0.64 7.91 -2.39 -0.02 0.62 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.14 7.83 -2.39 -0.02 1.12 16 32 H 0.11 1.05 8.05 -2.39 -0.02 1.03 16 33 H 0.15 2.68 8.05 -2.91 -0.02 2.66 16 34 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.12 3.68 7.66 -2.91 -0.02 3.66 16 37 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.10 3.80 7.85 -2.38 -0.02 3.78 16 39 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 40 H -0.02 -1.51 8.10 -2.38 -0.02 -1.53 16 41 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.65 7.39 -2.39 -0.02 1.63 16 Total: -1.00 -81.55 360.30 6.26 -75.29 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.99 Total: 11.52 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.04 Total: -20.28 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.52 Total: -79.96 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.78 Total: -4.12 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -81.55 6.26 -75.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292187072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.027 kcal (2) G-P(sol) polarization free energy of solvation -81.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds