Wall clock time and date at job start Tue Mar 31 2020 09:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.88043 * 2 1 4 4 C 1.55154 * 111.00645 * 236.08250 * 2 1 3 5 5 C 1.54317 * 102.86451 * 206.22870 * 4 2 1 6 6 H 1.09004 * 109.98305 * 263.04616 * 5 4 2 7 7 C 1.50702 * 109.77636 * 141.88156 * 5 4 2 8 8 C 1.38264 * 119.98427 * 100.79648 * 7 5 4 9 9 C 1.38224 * 120.04866 * 179.97438 * 8 7 5 10 10 C 1.38217 * 120.02856 * 0.02562 * 9 8 7 11 11 C 1.38442 * 119.96981 * 359.97438 * 10 9 8 12 12 F 1.35101 * 120.02324 * 180.02562 * 11 10 9 13 13 C 1.38170 * 119.98661 * 280.52482 * 7 5 4 14 14 N 1.47022 * 107.27272 * 22.52235 * 5 4 2 15 15 C 1.34775 * 125.64428 * 180.97248 * 14 5 4 16 16 O 1.21279 * 120.00300 * 359.71302 * 15 14 5 17 17 C 1.50703 * 119.99773 * 179.71702 * 15 14 5 18 18 C 1.53006 * 109.47126 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47184 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 C 1.47420 * 108.70428 * 0.70627 * 14 5 4 28 28 H 1.08999 * 109.47824 * 297.56875 * 1 2 3 29 29 H 1.09002 * 109.47502 * 57.57239 * 1 2 3 30 30 H 1.09006 * 109.47283 * 177.57023 * 1 2 3 31 31 H 1.09005 * 110.71808 * 324.78189 * 4 2 1 32 32 H 1.09003 * 110.72643 * 87.88007 * 4 2 1 33 33 H 1.08001 * 119.97530 * 0.02562 * 8 7 5 34 34 H 1.07999 * 119.98499 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.01843 * 180.02562 * 10 9 8 36 36 H 1.08009 * 120.01588 * 359.97438 * 13 7 5 37 37 H 1.09001 * 109.46980 * 59.99839 * 17 15 14 38 38 H 1.09001 * 109.47354 * 299.99360 * 17 15 14 39 39 H 1.08998 * 109.46509 * 60.00247 * 18 17 15 40 40 H 1.08993 * 109.46955 * 299.99807 * 18 17 15 41 41 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 42 42 H 1.09001 * 110.36998 * 94.93981 * 27 14 5 43 43 H 1.09005 * 110.36666 * 217.25940 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0862 -0.8082 -1.2020 5 6 3.4692 -1.2690 -0.6957 6 1 4.2428 -0.5912 -1.0566 7 6 3.7469 -2.6704 -1.1755 8 6 4.5732 -2.8768 -2.2646 9 6 4.8292 -4.1616 -2.7055 10 6 4.2589 -5.2415 -2.0582 11 6 3.4314 -5.0359 -0.9676 12 9 2.8737 -6.0907 -0.3338 13 6 3.1801 -3.7486 -0.5233 14 7 3.4271 -1.2427 0.7737 15 6 4.4481 -1.5596 1.5945 16 8 5.5134 -1.9073 1.1308 17 6 4.2659 -1.4818 3.0884 18 6 5.5665 -1.8907 3.7828 19 6 5.3845 -1.8123 5.2767 20 1 4.4359 -1.5023 5.6896 21 6 6.4287 -2.1374 6.1164 22 7 7.5836 -2.5153 5.6136 23 14 6.2028 -2.0409 7.9682 24 1 7.4653 -2.4376 8.6422 25 1 5.1108 -2.9581 8.3821 26 1 5.8531 -0.6498 8.3525 27 6 2.0853 -0.8062 1.2005 28 1 -0.3635 0.4756 0.9109 29 1 -0.3634 0.5511 -0.8674 30 1 -0.3634 -1.0268 -0.0436 31 1 1.4468 -1.6636 -1.4204 32 1 2.1892 -0.1713 -2.0805 33 1 5.0196 -2.0336 -2.7707 34 1 5.4745 -4.3216 -3.5566 35 1 4.4594 -6.2453 -2.4026 36 1 2.5384 -3.5873 0.3304 37 1 3.4648 -2.1556 3.3923 38 1 4.0085 -0.4608 3.3704 39 1 6.3678 -1.2171 3.4789 40 1 5.8235 -2.9117 3.5008 41 1 7.7008 -2.5658 4.6521 42 1 1.4519 -1.6699 1.4030 43 1 2.1559 -0.1712 2.0837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292187077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:35 Heat of formation + Delta-G solvation = -73.772742 kcal Electronic energy + Delta-G solvation = -25172.061715 eV Core-core repulsion = 21516.708804 eV Total energy + Delta-G solvation = -3655.352911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.86736 -40.55197 -38.59135 -37.45747 -33.80847 -33.06309 -32.23516 -30.62533 -30.56503 -28.73029 -26.48342 -25.30798 -23.73133 -22.77204 -22.12734 -20.95419 -20.50270 -18.82525 -17.47585 -17.18849 -16.53767 -16.23652 -15.91226 -15.89675 -15.55993 -15.05516 -14.48408 -14.05837 -13.94032 -13.76485 -13.67750 -13.33450 -13.17091 -12.99951 -12.59173 -12.54080 -12.18702 -12.16598 -11.92568 -11.75332 -11.51453 -11.41986 -11.09912 -10.98597 -10.86285 -10.80231 -10.12438 -10.09942 -9.90144 -9.34221 -8.98535 -8.71092 -8.52883 -8.49372 -8.26819 -6.30208 -4.00285 1.10324 1.17386 3.09830 3.14628 3.46074 3.48718 3.56009 3.67520 4.11537 4.29128 4.39023 4.48717 4.59007 4.67489 4.75367 4.94220 5.03736 5.11690 5.19060 5.20589 5.33971 5.36496 5.41605 5.45896 5.47615 5.61477 5.65467 5.70976 5.78938 5.83702 5.98459 6.04005 6.08555 6.09585 6.12510 6.22059 6.33025 6.52691 6.75555 6.84772 7.52981 7.58409 7.75163 8.20866 8.50980 8.64675 8.93582 9.73428 11.10667 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.004156 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.570460 B = 6735.280184 C = 7938.516209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.118 4.118 5 C 0.175 3.825 6 H 0.085 0.915 7 C -0.051 4.051 8 C -0.118 4.118 9 C -0.090 4.090 10 C -0.158 4.158 11 C 0.098 3.902 12 F -0.141 7.141 13 C -0.134 4.134 14 N -0.625 5.625 15 C 0.526 3.474 16 O -0.525 6.525 17 C -0.117 4.117 18 C 0.025 3.975 19 C -0.608 4.608 20 H 0.049 0.951 21 C 0.016 3.984 22 N -0.910 5.910 23 Si 1.070 2.930 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.288 1.288 27 C 0.103 3.897 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.272 0.728 42 H 0.067 0.933 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 2.810 -18.570 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.156 4.156 5 C 0.071 3.929 6 H 0.103 0.897 7 C -0.052 4.052 8 C -0.136 4.136 9 C -0.109 4.109 10 C -0.177 4.177 11 C 0.079 3.921 12 F -0.120 7.120 13 C -0.153 4.153 14 N -0.362 5.362 15 C 0.316 3.684 16 O -0.400 6.400 17 C -0.157 4.157 18 C -0.012 4.012 19 C -0.646 4.646 20 H 0.067 0.933 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.898 3.102 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.215 1.215 27 C -0.020 4.020 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.784 2.320 -17.259 22.209 hybrid contribution -0.912 -0.024 -1.317 1.602 sum -14.695 2.296 -18.575 23.796 Atomic orbital electron populations 1.21696 0.93615 1.02292 1.02229 1.22382 0.96243 0.99510 0.94325 0.89485 1.22794 0.94299 1.00326 0.98174 1.20418 0.98252 0.92386 0.81881 0.89731 1.19904 0.95661 0.94969 0.94705 1.21003 0.98177 0.97405 0.97047 1.20929 0.98597 0.91801 0.99526 1.21108 0.99409 1.00601 0.96575 1.17682 0.96968 0.83727 0.93725 1.91496 1.83592 1.55669 1.81224 1.20875 1.02649 0.90645 1.01168 1.48823 1.12893 1.69466 1.05026 1.21330 0.82025 0.75259 0.89739 1.90678 1.25848 1.45699 1.77733 1.21714 1.03597 1.02586 0.87761 1.19018 0.90619 0.96629 0.94983 1.22011 1.00661 1.50750 0.91206 0.93311 1.25840 0.92762 0.93727 1.06548 1.70733 1.24639 1.43603 1.15629 0.83544 0.75797 0.76326 0.74538 1.20754 1.21473 1.21475 1.22394 0.83501 0.98265 0.97818 0.92027 0.92171 0.92279 0.90159 0.89823 0.85475 0.85067 0.84961 0.85217 0.90259 0.90160 0.96768 0.96784 0.91758 0.91470 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.29 37.16 0.35 -0.54 16 2 C -0.11 -0.86 3.64 -88.48 -0.32 -1.18 16 3 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -1.00 5.92 -24.90 -0.15 -1.15 16 5 C 0.17 2.16 3.06 -68.11 -0.21 1.95 16 6 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 7 C -0.05 -0.69 4.08 -104.64 -0.43 -1.12 16 8 C -0.12 -1.42 9.68 -39.58 -0.38 -1.80 16 9 C -0.09 -1.02 10.04 -39.59 -0.40 -1.42 16 10 C -0.16 -1.96 10.03 -39.51 -0.40 -2.36 16 11 C 0.10 1.43 7.30 -39.42 -0.29 1.14 16 12 F -0.14 -2.16 17.27 2.25 0.04 -2.12 16 13 C -0.13 -1.96 9.11 -39.52 -0.36 -2.33 16 14 N -0.63 -9.20 2.31 -164.33 -0.38 -9.58 16 15 C 0.53 10.45 7.47 -10.98 -0.08 10.37 16 16 O -0.53 -12.56 15.81 5.56 0.09 -12.47 16 17 C -0.12 -2.47 4.64 -27.88 -0.13 -2.60 16 18 C 0.03 0.69 3.57 -27.88 -0.10 0.59 16 19 C -0.61 -17.75 9.11 -34.44 -0.31 -18.06 16 20 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 21 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 22 N -0.91 -29.19 13.65 55.43 0.76 -28.44 16 23 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.10 1.13 6.16 -2.53 -0.02 1.11 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 8.11 -51.93 -0.42 -0.05 16 31 H 0.08 0.67 7.69 -51.93 -0.40 0.27 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.13 1.25 8.05 -52.49 -0.42 0.83 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.13 1.90 7.68 -52.48 -0.40 1.50 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.08 1.56 7.85 -51.93 -0.41 1.16 16 39 H 0.01 0.42 7.97 -51.93 -0.41 0.00 16 40 H 0.01 0.42 7.97 -51.93 -0.41 0.00 16 41 H 0.27 8.88 7.22 -40.82 -0.29 8.59 16 42 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 43 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -35.56 359.48 -9.04 -44.60 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.56 Total: -1.07 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.32 Total: -17.02 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.38 Total: -38.01 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.56 -9.04 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292187077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.170 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds