Wall clock time and date at job start Tue Mar 31 2020 09:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.91761 * 2 1 4 4 C 1.55165 * 111.00458 * 123.90276 * 2 1 3 5 5 C 1.54322 * 102.94213 * 82.57220 * 4 2 1 6 6 H 1.09004 * 109.88028 * 262.78069 * 5 4 2 7 7 C 1.50690 * 109.88408 * 141.61165 * 5 4 2 8 8 C 1.38267 * 119.98712 * 100.73394 * 7 5 4 9 9 C 1.38227 * 120.05153 * 179.97438 * 8 7 5 10 10 C 1.38226 * 120.02670 * 0.02562 * 9 8 7 11 11 C 1.38438 * 119.96842 * 359.97438 * 10 9 8 12 12 F 1.35104 * 120.02402 * 180.02562 * 11 10 9 13 13 C 1.38176 * 119.98692 * 280.46252 * 7 5 4 14 14 N 1.47026 * 107.27122 * 22.18987 * 5 4 2 15 15 C 1.34777 * 125.64597 * 181.01911 * 14 5 4 16 16 O 1.21274 * 120.00145 * 0.02562 * 15 14 5 17 17 C 1.50696 * 119.99735 * 180.02562 * 15 14 5 18 18 C 1.52998 * 109.46973 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.47348 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.47425 * 108.70279 * 1.29335 * 14 5 4 28 28 H 1.09004 * 109.47194 * 296.09846 * 1 2 3 29 29 H 1.09000 * 109.47205 * 56.09387 * 1 2 3 30 30 H 1.08995 * 109.47558 * 176.09884 * 1 2 3 31 31 H 1.08993 * 110.71768 * 324.20758 * 4 2 1 32 32 H 1.09001 * 110.86991 * 201.00797 * 4 2 1 33 33 H 1.08002 * 119.97771 * 0.02635 * 8 7 5 34 34 H 1.07998 * 119.99063 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.01556 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.01362 * 0.02562 * 13 7 5 37 37 H 1.09000 * 109.47333 * 60.00571 * 17 15 14 38 38 H 1.09002 * 109.47152 * 300.00044 * 17 15 14 39 39 H 1.09001 * 109.47671 * 60.00215 * 18 17 15 40 40 H 1.09006 * 109.47297 * 299.99934 * 18 17 15 41 41 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 42 42 H 1.08995 * 110.37120 * 94.48109 * 27 14 5 43 43 H 1.09006 * 110.36092 * 216.80099 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0861 -0.8080 1.2023 5 6 2.0285 -2.2647 0.6960 6 1 1.1217 -2.7479 1.0599 7 6 3.2420 -3.0209 1.1717 8 6 3.1460 -3.8669 2.2611 9 6 4.2581 -4.5617 2.6981 10 6 5.4679 -4.4110 2.0468 11 6 5.5652 -3.5642 0.9559 12 9 6.7470 -3.4164 0.3181 13 6 4.4490 -2.8730 0.5155 14 7 2.0138 -2.2159 -0.7733 15 6 1.9471 -3.2829 -1.5940 16 8 1.8922 -4.4021 -1.1302 17 6 1.9406 -3.0852 -3.0879 18 6 1.8589 -4.4461 -3.7821 19 6 1.8530 -4.2485 -5.2762 20 1 1.9023 -3.2518 -5.6892 21 6 1.7849 -5.3400 -6.1157 22 7 1.7244 -6.5537 -5.6127 23 14 1.7769 -5.0949 -7.9675 24 1 1.6990 -6.4159 -8.6413 25 1 0.6024 -4.2720 -8.3529 26 1 3.0238 -4.4021 -8.3805 27 6 2.0908 -0.8069 -1.2004 28 1 -0.3634 0.4521 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3634 -1.0252 -0.0699 31 1 1.4524 -0.6792 2.0796 32 1 3.1129 -0.5170 1.4239 33 1 2.2010 -3.9857 2.7704 34 1 4.1819 -5.2226 3.5489 35 1 6.3367 -4.9542 2.3881 36 1 4.5229 -2.2151 -0.3379 37 1 2.8558 -2.5767 -3.3911 38 1 1.0785 -2.4811 -3.3708 39 1 0.9435 -4.9543 -3.4790 40 1 2.7207 -5.0506 -3.4994 41 1 1.7282 -6.6809 -4.6511 42 1 3.1252 -0.5266 -1.3988 43 1 1.4764 -0.6450 -2.0861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292187081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:37 Heat of formation + Delta-G solvation = -93.129317 kcal Electronic energy + Delta-G solvation = -25277.232235 eV Core-core repulsion = 21621.039960 eV Total energy + Delta-G solvation = -3656.192275 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.00085 -41.72501 -39.80558 -38.66443 -35.98461 -33.77643 -33.54985 -32.35194 -31.59312 -29.47327 -27.68112 -27.24549 -24.99410 -24.07512 -23.57362 -22.45199 -21.04435 -20.09076 -19.11753 -18.60205 -17.91692 -17.27293 -17.21733 -16.86392 -16.69600 -16.38219 -15.88567 -15.62785 -15.12298 -14.96425 -14.75847 -14.62605 -14.37148 -14.19515 -14.02126 -13.86540 -13.59176 -13.22519 -12.95489 -12.90711 -12.77570 -12.68087 -12.26200 -12.14708 -12.09178 -11.90942 -11.78763 -11.71755 -11.64873 -10.97845 -10.69560 -10.57766 -10.03092 -9.78330 -9.62567 -8.72392 -6.44315 0.09970 0.17288 1.52244 1.58502 1.62650 1.81141 1.92739 2.55045 2.58534 3.14459 3.15420 3.43347 3.52239 3.63886 3.75147 3.91450 3.98424 4.03532 4.16462 4.23595 4.25861 4.30822 4.37644 4.45546 4.62520 4.66849 4.72640 4.83543 4.84405 4.89826 4.99281 5.05374 5.11020 5.12898 5.20458 5.22346 5.26526 5.31625 5.32770 5.47715 5.51215 5.86806 5.89865 6.13164 6.43302 6.47694 7.15984 7.42067 8.67277 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.004261 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.474804 B = 6569.932888 C = 7881.357714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.123 0.877 4 C -0.107 4.107 5 C 0.169 3.831 6 H 0.078 0.922 7 C -0.064 4.064 8 C -0.125 4.125 9 C -0.086 4.086 10 C -0.162 4.162 11 C 0.070 3.930 12 F -0.153 7.153 13 C -0.153 4.153 14 N -0.612 5.612 15 C 0.525 3.475 16 O -0.580 6.580 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.619 4.619 20 H 0.066 0.934 21 C -0.044 4.044 22 N -0.939 5.939 23 Si 1.125 2.875 24 H -0.287 1.287 25 H -0.262 1.262 26 H -0.265 1.265 27 C 0.088 3.912 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.153 0.847 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.100 0.900 39 H -0.021 1.021 40 H -0.026 1.026 41 H 0.250 0.750 42 H 0.079 0.921 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 17.618 19.263 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.141 0.859 4 C -0.144 4.144 5 C 0.066 3.934 6 H 0.096 0.904 7 C -0.065 4.065 8 C -0.143 4.143 9 C -0.104 4.104 10 C -0.181 4.181 11 C 0.051 3.949 12 F -0.132 7.132 13 C -0.172 4.172 14 N -0.346 5.346 15 C 0.315 3.685 16 O -0.459 6.459 17 C -0.146 4.146 18 C -0.007 4.007 19 C -0.656 4.656 20 H 0.084 0.916 21 C -0.241 4.241 22 N -0.576 5.576 23 Si 0.944 3.056 24 H -0.212 1.212 25 H -0.186 1.186 26 H -0.190 1.190 27 C -0.033 4.033 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.167 0.833 34 H 0.184 0.816 35 H 0.170 0.830 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.119 0.881 39 H -0.002 1.002 40 H -0.008 1.008 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.790 16.192 17.998 24.276 hybrid contribution 0.490 0.003 1.188 1.285 sum 2.280 16.195 19.186 25.211 Atomic orbital electron populations 1.21760 0.93833 1.01220 1.03212 1.22413 0.96475 0.99902 0.92165 0.85936 1.22803 1.03453 0.89125 0.99047 1.20681 0.94376 0.98202 0.80120 0.90358 1.20118 0.93983 0.97134 0.95243 1.21393 1.00254 0.95920 0.96743 1.21368 0.90842 0.98224 0.99943 1.21439 1.01103 0.99742 0.95802 1.18031 0.81254 1.00733 0.94905 1.91457 1.45419 1.94838 1.81455 1.20920 0.92378 1.02451 1.01500 1.48646 1.72877 1.07029 1.06008 1.20893 0.74668 0.83289 0.89627 1.90647 1.51300 1.25613 1.78365 1.21454 1.04089 1.00017 0.89002 1.18824 0.93725 0.92731 0.95378 1.22472 1.55222 0.95914 0.92021 0.91551 1.27695 0.92466 0.92015 1.11907 1.70901 1.48612 1.23898 1.14150 0.82880 0.78388 0.76108 0.68225 1.21220 1.18632 1.18969 1.22832 1.02109 0.78799 0.99583 0.90382 0.91660 0.94721 0.87270 0.89560 0.83298 0.81633 0.82963 0.86075 0.88796 0.88148 1.00233 1.00768 0.94082 0.90310 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.22 71.98 0.66 -1.21 16 2 C -0.09 -1.14 3.72 -9.32 -0.03 -1.18 16 3 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.47 5.96 31.79 0.19 -1.28 16 5 C 0.17 3.99 2.73 44.59 0.12 4.11 16 6 H 0.08 1.94 8.03 -2.39 -0.02 1.93 16 7 C -0.06 -1.68 4.08 -19.88 -0.08 -1.77 16 8 C -0.12 -2.85 9.68 22.27 0.22 -2.64 16 9 C -0.09 -1.79 10.04 22.26 0.22 -1.57 16 10 C -0.16 -3.92 10.03 22.31 0.22 -3.69 16 11 C 0.07 2.07 7.30 22.38 0.16 2.24 16 12 F -0.15 -4.85 17.27 44.97 0.78 -4.07 16 13 C -0.15 -4.55 9.12 22.31 0.20 -4.35 16 14 N -0.61 -17.53 2.30 -791.76 -1.82 -19.35 16 15 C 0.52 21.41 7.47 87.66 0.65 22.06 16 16 O -0.58 -29.20 15.82 -3.01 -0.05 -29.25 16 17 C -0.11 -4.55 4.64 29.85 0.14 -4.41 16 18 C 0.03 1.79 3.57 29.85 0.11 1.89 16 19 C -0.62 -36.61 9.11 25.60 0.23 -36.37 16 20 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 21 C -0.04 -2.68 5.46 84.65 0.46 -2.22 16 22 N -0.94 -62.47 13.65 21.45 0.29 -62.17 16 23 Si 1.12 51.22 29.90 68.60 2.05 53.27 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 27 C 0.09 1.73 6.17 86.93 0.54 2.27 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.03 0.63 7.91 -2.39 -0.02 0.61 16 31 H 0.11 1.03 8.04 -2.39 -0.02 1.01 16 32 H 0.09 1.14 7.81 -2.39 -0.02 1.12 16 33 H 0.15 2.65 8.05 -2.91 -0.02 2.63 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.12 3.64 7.68 -2.91 -0.02 3.61 16 37 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.10 3.86 7.85 -2.39 -0.02 3.84 16 39 H -0.02 -1.32 7.97 -2.39 -0.02 -1.34 16 40 H -0.03 -1.69 7.97 -2.38 -0.02 -1.71 16 41 H 0.25 17.39 7.22 -92.71 -0.67 16.72 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.65 7.40 -2.38 -0.02 1.63 16 Total: -1.00 -82.65 359.05 6.36 -76.28 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.09 Total: 13.40 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.02 Total: -28.11 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.53 Total: -81.52 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.05 Total: -29.25 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.78 Total: -4.07 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Total: -82.65 6.36 -76.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292187081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.846 kcal (2) G-P(sol) polarization free energy of solvation -82.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds