Wall clock time and date at job start Tue Mar 31 2020 09:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88105 * 2 1 4 4 C 1.55157 * 111.00544 * 123.87939 * 2 1 3 5 5 C 1.54323 * 102.93924 * 153.61655 * 4 2 1 6 6 H 1.09005 * 109.88379 * 97.22829 * 5 4 2 7 7 C 1.50703 * 110.00937 * 218.31731 * 5 4 2 8 8 C 1.38266 * 119.98380 * 79.06555 * 7 5 4 9 9 C 1.38232 * 120.04996 * 179.76570 * 8 7 5 10 10 C 1.38217 * 120.02133 * 0.51096 * 9 8 7 11 11 C 1.38441 * 119.97689 * 359.74355 * 10 9 8 12 12 F 1.35099 * 120.02319 * 179.97438 * 11 10 9 13 13 C 1.38170 * 119.99088 * 259.33970 * 7 5 4 14 14 N 1.47018 * 107.27252 * 337.80856 * 5 4 2 15 15 C 1.34784 * 125.64722 * 178.90573 * 14 5 4 16 16 O 1.21279 * 119.99925 * 359.97438 * 15 14 5 17 17 C 1.50700 * 119.99961 * 180.02562 * 15 14 5 18 18 C 1.52992 * 109.47257 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00045 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47292 * 59.98803 * 23 21 19 25 25 H 1.48495 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46765 * 299.99473 * 23 21 19 27 27 C 1.47421 * 108.70379 * 359.16638 * 14 5 4 28 28 H 1.08995 * 109.46910 * 296.11938 * 1 2 3 29 29 H 1.08992 * 109.47059 * 56.12139 * 1 2 3 30 30 H 1.08998 * 109.46761 * 176.12047 * 1 2 3 31 31 H 1.09002 * 110.71837 * 35.25368 * 4 2 1 32 32 H 1.09000 * 110.87285 * 272.04835 * 4 2 1 33 33 H 1.08000 * 119.97933 * 0.02562 * 8 7 5 34 34 H 1.07999 * 119.98932 * 180.25102 * 9 8 7 35 35 H 1.08001 * 120.01307 * 179.72623 * 10 9 8 36 36 H 1.08007 * 120.00749 * 359.95456 * 13 7 5 37 37 H 1.09004 * 109.46932 * 300.00223 * 17 15 14 38 38 H 1.08997 * 109.47392 * 59.99562 * 17 15 14 39 39 H 1.09004 * 109.47330 * 299.99977 * 18 17 15 40 40 H 1.09005 * 109.47124 * 59.99773 * 18 17 15 41 41 H 0.97000 * 120.00297 * 180.02562 * 22 21 19 42 42 H 1.09006 * 110.36331 * 142.73710 * 27 14 5 43 43 H 1.08996 * 110.37004 * 265.06168 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8074 1.2025 5 6 3.4679 -1.2729 0.6968 6 1 4.2426 -0.5981 1.0609 7 6 3.7455 -2.6757 1.1726 8 6 3.1706 -3.7522 0.5228 9 6 3.4281 -5.0397 0.9551 10 6 4.2523 -5.2516 2.0442 11 6 4.8243 -4.1742 2.6989 12 9 5.6296 -4.3802 3.7639 13 6 4.5698 -2.8852 2.2616 14 7 3.4281 -1.2420 -0.7725 15 6 4.4496 -1.5588 -1.5928 16 8 5.5151 -1.9050 -1.1286 17 6 4.2679 -1.4816 -3.0869 18 6 5.5689 -1.8902 -3.7806 19 6 5.3870 -1.8136 -5.2746 20 1 4.4383 -1.5048 -5.6880 21 6 6.4315 -2.1387 -6.1138 22 7 7.5867 -2.5152 -5.6104 23 14 6.2064 -2.0431 -7.9657 24 1 5.8563 -0.6523 -8.3507 25 1 7.4691 -2.4398 -8.6390 26 1 5.1148 -2.9609 -8.3796 27 6 2.0878 -0.8012 -1.1999 28 1 -0.3633 0.4524 0.9227 29 1 -0.3633 0.5728 -0.8531 30 1 -0.3633 -1.0253 -0.0695 31 1 1.4472 -1.6630 1.4211 32 1 2.1914 -0.1718 2.0817 33 1 2.5232 -3.5874 -0.3258 34 1 2.9818 -5.8801 0.4443 35 1 4.4499 -6.2574 2.3846 36 1 5.0157 -2.0438 2.7713 37 1 3.4672 -2.1558 -3.3908 38 1 4.0101 -0.4609 -3.3693 39 1 6.3699 -1.2162 -3.4767 40 1 5.8262 -2.9110 -3.4981 41 1 8.3217 -2.7436 -6.2008 42 1 2.1613 -0.1636 -2.0810 43 1 1.4528 -1.6628 -1.4059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292187085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:40 Heat of formation + Delta-G solvation = -69.604806 kcal Electronic energy + Delta-G solvation = -24984.045977 eV Core-core repulsion = 21328.873802 eV Total energy + Delta-G solvation = -3655.172176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.87694 -40.49279 -38.51365 -37.37974 -33.50319 -32.99876 -32.23078 -30.82207 -30.37990 -28.72475 -26.45911 -25.71876 -23.71203 -22.77127 -22.07374 -20.80859 -20.36363 -18.72899 -17.27378 -17.07469 -16.56123 -16.17967 -15.86712 -15.62339 -15.53948 -14.97891 -14.49350 -14.31469 -14.08441 -13.80410 -13.63371 -13.13657 -13.11936 -12.93991 -12.54702 -12.34584 -12.20255 -12.08918 -11.92634 -11.75782 -11.34642 -11.18569 -11.08387 -10.94749 -10.91503 -10.78417 -10.61147 -9.94930 -9.64510 -9.22511 -9.09011 -8.89063 -8.67709 -8.42406 -8.30941 -5.95408 -4.00155 1.15506 1.21588 3.16856 3.23247 3.34278 3.39233 3.40811 3.61756 4.17498 4.28014 4.44317 4.48869 4.54364 4.72582 4.79529 4.99232 5.08434 5.19882 5.22276 5.24243 5.37123 5.39311 5.40852 5.47949 5.50593 5.66072 5.70297 5.76411 5.83993 5.86872 6.05186 6.08120 6.09343 6.20894 6.22661 6.29195 6.40295 6.60681 6.88874 6.89808 7.74242 7.83975 7.86370 8.07595 8.38567 8.75162 9.08083 9.63317 11.15468 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.003985 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.356066 B = 7024.693660 C = 8579.787760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.118 4.118 5 C 0.174 3.826 6 H 0.082 0.918 7 C -0.050 4.050 8 C -0.110 4.110 9 C -0.089 4.089 10 C -0.157 4.157 11 C 0.097 3.903 12 F -0.143 7.143 13 C -0.141 4.141 14 N -0.626 5.626 15 C 0.525 3.475 16 O -0.522 6.522 17 C -0.123 4.123 18 C 0.038 3.962 19 C -0.528 4.528 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.105 3.895 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.081 0.919 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.223 1.688 16.520 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.104 0.896 4 C -0.155 4.155 5 C 0.070 3.930 6 H 0.100 0.900 7 C -0.051 4.051 8 C -0.128 4.128 9 C -0.107 4.107 10 C -0.176 4.176 11 C 0.077 3.923 12 F -0.122 7.122 13 C -0.160 4.160 14 N -0.362 5.362 15 C 0.316 3.684 16 O -0.396 6.396 17 C -0.163 4.163 18 C 0.000 4.000 19 C -0.566 4.566 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.018 4.018 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.315 1.407 16.675 22.684 hybrid contribution 0.196 -0.063 -0.876 0.900 sum -15.119 1.344 15.799 21.909 Atomic orbital electron populations 1.21689 0.93655 1.02294 1.02140 1.22341 0.96176 0.99582 0.94408 0.89575 1.22779 0.94322 1.00311 0.98137 1.20381 0.98197 0.92333 0.82085 0.89993 1.19889 0.95323 0.95857 0.94048 1.20984 1.00304 0.91931 0.99625 1.20977 0.97122 0.97289 0.95357 1.21096 1.00223 0.98344 0.97969 1.17617 0.93591 0.94216 0.86839 1.91481 1.71136 1.95837 1.53724 1.20888 1.00642 0.95678 0.98830 1.48850 1.12995 1.69530 1.04874 1.21362 0.81979 0.75299 0.89747 1.90698 1.25728 1.45482 1.77646 1.21854 1.04161 1.02437 0.87851 1.18898 0.89709 0.97720 0.93649 1.21164 0.98026 1.46079 0.91316 0.92693 1.25015 0.95249 0.95270 0.98751 1.69989 1.02560 1.45186 1.35046 0.86661 0.77359 0.78427 0.85534 1.20249 1.21276 1.20249 1.22330 0.83618 0.98187 0.97701 0.92223 0.92096 0.92258 0.90160 0.89929 0.85694 0.85094 0.85008 0.84991 0.90405 0.90356 0.95874 0.95865 0.92889 0.90038 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.31 37.16 0.35 -0.50 16 2 C -0.11 -0.84 3.62 -88.59 -0.32 -1.16 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.00 5.94 -24.90 -0.15 -1.14 16 5 C 0.17 2.17 3.05 -68.11 -0.21 1.96 16 6 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 7 C -0.05 -0.68 4.09 -104.63 -0.43 -1.11 16 8 C -0.11 -1.46 9.14 -39.57 -0.36 -1.82 16 9 C -0.09 -1.10 10.04 -39.59 -0.40 -1.49 16 10 C -0.16 -1.97 10.03 -39.51 -0.40 -2.37 16 11 C 0.10 1.33 7.30 -39.42 -0.29 1.04 16 12 F -0.14 -2.01 17.27 2.25 0.04 -1.97 16 13 C -0.14 -1.92 9.66 -39.52 -0.38 -2.30 16 14 N -0.63 -8.98 2.33 -164.46 -0.38 -9.37 16 15 C 0.53 10.26 7.48 -10.98 -0.08 10.18 16 16 O -0.52 -12.51 15.81 5.56 0.09 -12.43 16 17 C -0.12 -2.52 4.65 -27.89 -0.13 -2.65 16 18 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 19 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 23 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C 0.10 1.09 6.16 -2.65 -0.02 1.07 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.08 0.65 7.71 -51.93 -0.40 0.25 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.13 1.57 7.69 -52.49 -0.40 1.17 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 1.59 8.05 -52.48 -0.42 1.17 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 43 H 0.07 0.63 7.98 -51.93 -0.41 0.22 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -34.47 360.78 -9.06 -43.53 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.61 Total: -1.97 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.34 Total: -13.05 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.35 Total: -36.20 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.47 -9.06 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292187085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.078 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds