Wall clock time and date at job start Tue Mar 31 2020 09:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88105 * 2 1 4 4 C 1.55157 * 111.00544 * 123.87939 * 2 1 3 5 5 C 1.54323 * 102.93924 * 153.61655 * 4 2 1 6 6 H 1.09005 * 109.88379 * 97.22829 * 5 4 2 7 7 C 1.50703 * 110.00937 * 218.31731 * 5 4 2 8 8 C 1.38266 * 119.98380 * 79.06555 * 7 5 4 9 9 C 1.38232 * 120.04996 * 179.76570 * 8 7 5 10 10 C 1.38217 * 120.02133 * 0.51096 * 9 8 7 11 11 C 1.38441 * 119.97689 * 359.74355 * 10 9 8 12 12 F 1.35099 * 120.02319 * 179.97438 * 11 10 9 13 13 C 1.38170 * 119.99088 * 259.33970 * 7 5 4 14 14 N 1.47018 * 107.27252 * 337.80856 * 5 4 2 15 15 C 1.34784 * 125.64722 * 178.90573 * 14 5 4 16 16 O 1.21279 * 119.99925 * 359.97438 * 15 14 5 17 17 C 1.50700 * 119.99961 * 180.02562 * 15 14 5 18 18 C 1.52992 * 109.47257 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00045 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47292 * 59.98803 * 23 21 19 25 25 H 1.48495 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46765 * 299.99473 * 23 21 19 27 27 C 1.47421 * 108.70379 * 359.16638 * 14 5 4 28 28 H 1.08995 * 109.46910 * 296.11938 * 1 2 3 29 29 H 1.08992 * 109.47059 * 56.12139 * 1 2 3 30 30 H 1.08998 * 109.46761 * 176.12047 * 1 2 3 31 31 H 1.09002 * 110.71837 * 35.25368 * 4 2 1 32 32 H 1.09000 * 110.87285 * 272.04835 * 4 2 1 33 33 H 1.08000 * 119.97933 * 0.02562 * 8 7 5 34 34 H 1.07999 * 119.98932 * 180.25102 * 9 8 7 35 35 H 1.08001 * 120.01307 * 179.72623 * 10 9 8 36 36 H 1.08007 * 120.00749 * 359.95456 * 13 7 5 37 37 H 1.09004 * 109.46932 * 300.00223 * 17 15 14 38 38 H 1.08997 * 109.47392 * 59.99562 * 17 15 14 39 39 H 1.09004 * 109.47330 * 299.99977 * 18 17 15 40 40 H 1.09005 * 109.47124 * 59.99773 * 18 17 15 41 41 H 0.97000 * 120.00297 * 180.02562 * 22 21 19 42 42 H 1.09006 * 110.36331 * 142.73710 * 27 14 5 43 43 H 1.08996 * 110.37004 * 265.06168 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8074 1.2025 5 6 3.4679 -1.2729 0.6968 6 1 4.2426 -0.5981 1.0609 7 6 3.7455 -2.6757 1.1726 8 6 3.1706 -3.7522 0.5228 9 6 3.4281 -5.0397 0.9551 10 6 4.2523 -5.2516 2.0442 11 6 4.8243 -4.1742 2.6989 12 9 5.6296 -4.3802 3.7639 13 6 4.5698 -2.8852 2.2616 14 7 3.4281 -1.2420 -0.7725 15 6 4.4496 -1.5588 -1.5928 16 8 5.5151 -1.9050 -1.1286 17 6 4.2679 -1.4816 -3.0869 18 6 5.5689 -1.8902 -3.7806 19 6 5.3870 -1.8136 -5.2746 20 1 4.4383 -1.5048 -5.6880 21 6 6.4315 -2.1387 -6.1138 22 7 7.5867 -2.5152 -5.6104 23 14 6.2064 -2.0431 -7.9657 24 1 5.8563 -0.6523 -8.3507 25 1 7.4691 -2.4398 -8.6390 26 1 5.1148 -2.9609 -8.3796 27 6 2.0878 -0.8012 -1.1999 28 1 -0.3633 0.4524 0.9227 29 1 -0.3633 0.5728 -0.8531 30 1 -0.3633 -1.0253 -0.0695 31 1 1.4472 -1.6630 1.4211 32 1 2.1914 -0.1718 2.0817 33 1 2.5232 -3.5874 -0.3258 34 1 2.9818 -5.8801 0.4443 35 1 4.4499 -6.2574 2.3846 36 1 5.0157 -2.0438 2.7713 37 1 3.4672 -2.1558 -3.3908 38 1 4.0101 -0.4609 -3.3693 39 1 6.3699 -1.2162 -3.4767 40 1 5.8262 -2.9110 -3.4981 41 1 8.3217 -2.7436 -6.2008 42 1 2.1613 -0.1636 -2.0810 43 1 1.4528 -1.6628 -1.4059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292187085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:39 Heat of formation + Delta-G solvation = -88.714162 kcal Electronic energy + Delta-G solvation = -24984.874621 eV Core-core repulsion = 21328.873802 eV Total energy + Delta-G solvation = -3656.000819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.95807 -41.61394 -39.73640 -38.53658 -35.58590 -33.91233 -33.56642 -32.53066 -31.46751 -29.64483 -27.77624 -27.12075 -24.86608 -23.79047 -23.67633 -22.01800 -21.23623 -20.04366 -18.84829 -18.22694 -17.96489 -17.24174 -17.17760 -16.82663 -16.64267 -16.49727 -16.33671 -15.60568 -15.15008 -14.67067 -14.63000 -14.41499 -14.20363 -14.10644 -13.92160 -13.56243 -13.42865 -13.26988 -13.02812 -12.83966 -12.77389 -12.68453 -12.51253 -12.20660 -11.97626 -11.91469 -11.67874 -11.54622 -11.49746 -11.32192 -10.73326 -10.56149 -9.97805 -9.79008 -9.55039 -8.17724 -6.32350 0.12978 0.19817 1.42052 1.46710 1.54478 1.70274 1.98771 2.43266 2.58920 3.15232 3.18420 3.45669 3.60317 3.66323 3.83349 3.99093 4.04284 4.06882 4.20490 4.27708 4.38628 4.46799 4.49553 4.53613 4.66730 4.71329 4.83214 4.90903 4.92274 5.00849 5.04728 5.07787 5.08662 5.19263 5.26505 5.34890 5.38760 5.48210 5.54853 5.57306 5.61501 5.84277 5.89069 6.16835 6.52340 6.86018 7.27770 7.38299 8.94795 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.003985 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.356066 B = 7024.693660 C = 8579.787760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.088 0.912 4 C -0.106 4.106 5 C 0.168 3.832 6 H 0.069 0.931 7 C -0.061 4.061 8 C -0.122 4.122 9 C -0.092 4.092 10 C -0.161 4.161 11 C 0.078 3.922 12 F -0.148 7.148 13 C -0.156 4.156 14 N -0.614 5.614 15 C 0.525 3.475 16 O -0.581 6.581 17 C -0.111 4.111 18 C 0.045 3.955 19 C -0.543 4.543 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.939 5.939 23 Si 0.974 3.026 24 H -0.262 1.262 25 H -0.289 1.289 26 H -0.261 1.261 27 C 0.093 3.907 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.100 0.900 39 H -0.021 1.021 40 H -0.020 1.020 41 H 0.262 0.738 42 H 0.087 0.913 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.597 2.279 15.773 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.107 0.893 4 C -0.143 4.143 5 C 0.064 3.936 6 H 0.087 0.913 7 C -0.062 4.062 8 C -0.141 4.141 9 C -0.110 4.110 10 C -0.180 4.180 11 C 0.059 3.941 12 F -0.127 7.127 13 C -0.175 4.175 14 N -0.348 5.348 15 C 0.316 3.684 16 O -0.460 6.460 17 C -0.150 4.150 18 C 0.008 3.992 19 C -0.581 4.581 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.797 3.203 24 H -0.186 1.186 25 H -0.214 1.214 26 H -0.185 1.185 27 C -0.029 4.029 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.119 0.881 38 H 0.119 0.881 39 H -0.003 1.003 40 H -0.002 1.002 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.776 2.028 15.953 24.722 hybrid contribution 1.237 -0.247 -0.575 1.387 sum -17.539 1.780 15.378 23.394 Atomic orbital electron populations 1.21666 0.91618 1.02880 1.03096 1.22317 0.97581 0.99014 0.92466 0.89323 1.22788 0.91599 1.01011 0.98934 1.20622 1.00494 0.91828 0.80647 0.91328 1.20051 0.95461 0.96551 0.94145 1.21193 1.00646 0.92389 0.99844 1.21325 0.96693 0.97821 0.95124 1.21397 0.99737 0.99032 0.97807 1.17875 0.94175 0.94858 0.87204 1.91460 1.71377 1.95880 1.53997 1.21069 1.00997 0.96090 0.99384 1.48681 1.13254 1.67253 1.05622 1.21050 0.82251 0.75296 0.89842 1.90675 1.28320 1.48604 1.78403 1.21586 1.00950 1.03996 0.88482 1.18659 0.91890 0.94220 0.94459 1.21662 0.98915 1.45584 0.91898 0.90533 1.26138 0.94696 0.94564 1.04920 1.70181 1.03813 1.46557 1.37294 0.85377 0.77530 0.79341 0.78027 1.18619 1.21425 1.18546 1.22735 0.81537 0.99439 0.99183 0.91036 0.91475 0.91825 0.89180 0.87982 0.85042 0.82514 0.82919 0.84404 0.88091 0.88149 1.00256 1.00182 0.92895 0.89507 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.31 71.98 0.67 -0.43 16 2 C -0.09 -1.20 3.62 -9.48 -0.03 -1.23 16 3 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.52 5.94 31.78 0.19 -1.33 16 5 C 0.17 4.07 3.05 44.60 0.14 4.21 16 6 H 0.07 1.85 8.03 -2.38 -0.02 1.83 16 7 C -0.06 -1.65 4.09 -19.87 -0.08 -1.73 16 8 C -0.12 -3.16 9.14 22.27 0.20 -2.96 16 9 C -0.09 -2.16 10.04 22.26 0.22 -1.93 16 10 C -0.16 -3.94 10.03 22.31 0.22 -3.72 16 11 C 0.08 2.18 7.30 22.37 0.16 2.34 16 12 F -0.15 -4.24 17.27 44.97 0.78 -3.46 16 13 C -0.16 -4.36 9.66 22.31 0.22 -4.14 16 14 N -0.61 -17.14 2.33 -792.62 -1.85 -18.99 16 15 C 0.52 20.91 7.48 87.66 0.66 21.57 16 16 O -0.58 -29.45 15.81 -3.03 -0.05 -29.50 16 17 C -0.11 -4.52 4.65 29.85 0.14 -4.38 16 18 C 0.05 2.57 4.26 29.85 0.13 2.69 16 19 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 20 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 21 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 22 N -0.94 -60.18 13.29 21.45 0.28 -59.89 16 23 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 C 0.09 1.68 6.16 86.78 0.53 2.21 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.09 1.17 7.71 -2.39 -0.02 1.15 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.13 3.12 7.69 -2.91 -0.02 3.10 16 34 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.14 3.48 8.05 -2.91 -0.02 3.46 16 37 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 38 H 0.10 3.64 7.84 -2.39 -0.02 3.62 16 39 H -0.02 -1.35 8.10 -2.38 -0.02 -1.37 16 40 H -0.02 -1.30 8.10 -2.38 -0.02 -1.32 16 41 H 0.26 15.80 8.31 -92.71 -0.77 15.02 16 42 H 0.09 1.52 7.48 -2.38 -0.02 1.51 16 43 H 0.08 1.30 7.98 -2.39 -0.02 1.28 16 Total: -1.00 -79.42 360.78 6.24 -73.18 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.99 Total: 11.84 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.06 Total: -19.48 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.56 Total: -78.88 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.05 Total: -29.50 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -79.42 6.24 -73.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292187085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.535 kcal (2) G-P(sol) polarization free energy of solvation -79.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds