Wall clock time and date at job start Tue Mar 31 2020 09:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99813 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00047 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47231 * 89.99796 * 10 8 6 12 12 H 1.48499 * 109.47342 * 210.00322 * 10 8 6 13 13 H 1.48505 * 109.46935 * 330.00024 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 4 18 18 H 1.09000 * 109.47017 * 54.99395 * 17 16 14 19 19 C 1.52999 * 109.47022 * 294.99939 * 17 16 14 20 20 C 1.50695 * 109.47310 * 174.99934 * 17 16 14 21 21 C 1.38249 * 119.97376 * 59.72091 * 20 17 16 22 22 C 1.38194 * 120.02379 * 179.76825 * 21 20 17 23 23 C 1.38465 * 119.97587 * 0.50713 * 22 21 20 24 24 F 1.35100 * 120.02864 * 179.76492 * 23 22 21 25 25 C 1.38465 * 119.94683 * 359.75096 * 23 22 21 26 26 C 1.38197 * 119.97376 * 359.97438 * 25 23 22 27 27 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 28 28 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 31 31 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 32 32 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 33 33 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 34 34 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 37 37 H 1.09001 * 109.47522 * 180.02562 * 19 17 16 38 38 H 1.09007 * 109.47141 * 300.00185 * 19 17 16 39 39 H 1.09005 * 109.47435 * 59.99710 * 19 17 16 40 40 H 1.07997 * 119.98592 * 0.02562 * 21 20 17 41 41 H 1.08001 * 120.01504 * 180.25454 * 22 21 20 42 42 H 1.07998 * 120.00995 * 179.97438 * 25 23 22 43 43 H 1.08000 * 119.98546 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 2.7680 5.3571 3.6569 10 14 1.7260 3.2129 5.0685 11 1 2.7827 2.7226 5.9895 12 1 0.8496 4.1727 5.7868 13 1 0.9149 2.0648 4.5898 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 6 6.1571 -0.1294 -0.2505 18 1 6.2609 -0.8430 0.5668 19 6 7.0510 1.0835 0.0148 20 6 6.5690 -0.7837 -1.5440 21 6 6.5156 -0.0698 -2.7268 22 6 6.8977 -0.6673 -3.9129 23 6 7.3242 -1.9846 -3.9180 24 9 7.6935 -2.5712 -5.0776 25 6 7.3722 -2.7002 -2.7336 26 6 6.9950 -2.0989 -1.5478 27 1 -0.5399 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0990 1.3603 3.2260 34 1 2.5391 5.8658 4.4505 35 1 4.0730 -0.5248 -0.6265 36 1 4.6113 1.1022 -1.1075 37 1 8.0898 0.7609 0.0851 38 1 6.9472 1.7972 -0.8025 39 1 6.7531 1.5568 0.9505 40 1 6.1791 0.9564 -2.7231 41 1 6.8598 -0.1082 -4.8361 42 1 7.7043 -3.7278 -2.7364 43 1 7.0328 -2.6567 -0.6238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292237787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:20 Heat of formation + Delta-G solvation = -43.079733 kcal Electronic energy + Delta-G solvation = -24580.403566 eV Core-core repulsion = 20926.381604 eV Total energy + Delta-G solvation = -3654.021962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.05505 -39.95014 -38.93752 -35.97595 -34.73780 -33.16951 -32.14169 -31.33752 -29.76676 -28.65260 -27.09580 -25.48379 -23.76635 -23.15141 -22.19575 -20.34712 -19.96754 -18.31496 -17.87663 -16.95513 -16.82197 -16.36435 -15.77327 -15.66391 -15.29421 -15.09662 -14.47130 -14.34221 -14.06716 -13.90503 -13.66637 -13.32481 -13.16222 -12.99677 -12.73577 -12.40173 -12.09225 -12.04401 -11.74166 -11.64892 -11.36905 -11.24728 -10.99250 -10.96659 -10.83939 -10.63527 -10.53019 -10.15021 -9.57852 -9.29881 -9.28780 -8.97440 -8.67066 -8.60099 -7.76000 -6.10249 -4.08880 0.96517 1.04441 2.34055 3.28191 3.31574 3.34264 3.36231 3.39422 3.86638 4.08568 4.38454 4.51090 4.60241 4.70078 4.95306 5.03548 5.10677 5.16466 5.19289 5.24543 5.28317 5.31282 5.49507 5.62904 5.71492 5.77046 5.85977 5.89100 5.92718 5.93718 6.04350 6.10863 6.13814 6.23530 6.51252 6.65814 6.69277 6.69794 6.73991 6.82623 6.94232 7.34129 7.60041 8.22617 8.45397 8.90981 8.97089 9.50382 11.03057 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.003285 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.217808 B = 8522.277963 C = 9190.810872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.590 5.590 5 C 0.217 3.783 6 C -0.528 4.528 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.509 3.491 15 O -0.536 6.536 16 C -0.133 4.133 17 C -0.035 4.035 18 H 0.087 0.913 19 C -0.150 4.150 20 C -0.078 4.078 21 C -0.085 4.085 22 C -0.151 4.151 23 C 0.086 3.914 24 F -0.145 7.145 25 C -0.152 4.152 26 C -0.088 4.088 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -14.594 -14.347 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.320 5.320 5 C 0.096 3.904 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.296 3.704 15 O -0.414 6.414 16 C -0.174 4.174 17 C -0.054 4.054 18 H 0.106 0.894 19 C -0.207 4.207 20 C -0.078 4.078 21 C -0.103 4.103 22 C -0.170 4.170 23 C 0.067 3.933 24 F -0.123 7.123 25 C -0.171 4.171 26 C -0.106 4.106 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.129 -14.414 -13.751 20.344 hybrid contribution -0.466 -0.435 0.462 0.787 sum 3.663 -14.849 -13.288 20.260 Atomic orbital electron populations 1.23845 0.95877 1.01830 1.00579 1.23449 0.96397 0.99083 0.99898 1.20605 0.93145 0.95288 0.89758 1.47918 1.10870 1.60332 1.12895 1.19640 0.94850 0.95125 0.80741 1.21322 1.41133 0.91146 1.03031 0.90749 1.24848 0.95279 0.94711 0.98127 1.69897 1.47823 1.06598 1.29280 0.86870 0.79885 0.79684 0.83388 1.19915 1.21097 1.19055 1.20324 0.81970 0.78295 0.89819 1.90637 1.52166 1.56382 1.42198 1.21803 0.96665 1.01947 0.96937 1.19903 0.93702 0.98384 0.93411 0.89432 1.21984 0.98444 0.96531 1.03770 1.20106 0.98326 0.93885 0.95478 1.20949 0.98115 1.00277 0.91004 1.21142 1.02297 0.93658 0.99880 1.17730 1.01699 0.92268 0.81652 1.91484 1.89386 1.84295 1.47160 1.21123 1.03553 1.00864 0.91575 1.20993 0.97676 0.94381 0.97594 0.88216 0.88757 0.87734 0.89294 0.90413 0.95350 0.94608 0.92572 0.89464 0.89196 0.93065 0.93185 0.89337 0.84835 0.84866 0.84949 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 14.32 29.01 0.42 -1.76 16 2 C -0.17 -2.19 9.76 -36.03 -0.35 -2.54 16 3 C 0.14 2.05 5.66 -5.19 -0.03 2.02 16 4 N -0.59 -11.54 2.44 -176.43 -0.43 -11.97 16 5 C 0.22 5.19 4.23 -5.20 -0.02 5.17 16 6 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16 7 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 8 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 10 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 14 C 0.51 9.58 7.39 -10.98 -0.08 9.49 16 15 O -0.54 -12.16 13.55 5.55 0.08 -12.08 16 16 C -0.13 -1.77 3.46 -27.88 -0.10 -1.87 16 17 C -0.04 -0.44 2.21 -91.78 -0.20 -0.65 16 18 H 0.09 1.17 7.69 -51.93 -0.40 0.77 16 19 C -0.15 -2.08 8.75 37.16 0.33 -1.76 16 20 C -0.08 -0.83 4.78 -104.62 -0.50 -1.33 16 21 C -0.09 -0.85 8.76 -39.59 -0.35 -1.19 16 22 C -0.15 -1.46 10.03 -39.51 -0.40 -1.86 16 23 C 0.09 0.89 7.30 -39.41 -0.29 0.60 16 24 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 25 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 26 C -0.09 -0.86 9.67 -39.59 -0.38 -1.25 16 27 H 0.10 1.17 7.84 -52.49 -0.41 0.75 16 28 H 0.09 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.10 1.26 7.85 -52.49 -0.41 0.84 16 30 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 31 H 0.08 0.97 6.43 -51.93 -0.33 0.64 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 35 H 0.09 0.99 7.82 -51.93 -0.41 0.59 16 36 H 0.09 1.07 6.81 -51.93 -0.35 0.72 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 39 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 40 H 0.13 1.18 7.16 -52.49 -0.38 0.81 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.13 1.10 7.94 -52.49 -0.42 0.68 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -32.56 360.47 -7.78 -40.35 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.21 Total: 1.63 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.79 Total: -11.94 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.34 Total: -38.56 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.56 -7.78 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292237787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.732 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds