Wall clock time and date at job start Tue Mar 31 2020 09:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99813 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00047 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47231 * 89.99796 * 10 8 6 12 12 H 1.48499 * 109.47342 * 210.00322 * 10 8 6 13 13 H 1.48505 * 109.46935 * 330.00024 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 4 18 18 H 1.09000 * 109.47017 * 54.99395 * 17 16 14 19 19 C 1.52999 * 109.47022 * 294.99939 * 17 16 14 20 20 C 1.50695 * 109.47310 * 174.99934 * 17 16 14 21 21 C 1.38249 * 119.97376 * 59.72091 * 20 17 16 22 22 C 1.38194 * 120.02379 * 179.76825 * 21 20 17 23 23 C 1.38465 * 119.97587 * 0.50713 * 22 21 20 24 24 F 1.35100 * 120.02864 * 179.76492 * 23 22 21 25 25 C 1.38465 * 119.94683 * 359.75096 * 23 22 21 26 26 C 1.38197 * 119.97376 * 359.97438 * 25 23 22 27 27 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 28 28 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 31 31 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 32 32 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 33 33 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 34 34 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 37 37 H 1.09001 * 109.47522 * 180.02562 * 19 17 16 38 38 H 1.09007 * 109.47141 * 300.00185 * 19 17 16 39 39 H 1.09005 * 109.47435 * 59.99710 * 19 17 16 40 40 H 1.07997 * 119.98592 * 0.02562 * 21 20 17 41 41 H 1.08001 * 120.01504 * 180.25454 * 22 21 20 42 42 H 1.07998 * 120.00995 * 179.97438 * 25 23 22 43 43 H 1.08000 * 119.98546 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 2.7680 5.3571 3.6569 10 14 1.7260 3.2129 5.0685 11 1 2.7827 2.7226 5.9895 12 1 0.8496 4.1727 5.7868 13 1 0.9149 2.0648 4.5898 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 6 6.1571 -0.1294 -0.2505 18 1 6.2609 -0.8430 0.5668 19 6 7.0510 1.0835 0.0148 20 6 6.5690 -0.7837 -1.5440 21 6 6.5156 -0.0698 -2.7268 22 6 6.8977 -0.6673 -3.9129 23 6 7.3242 -1.9846 -3.9180 24 9 7.6935 -2.5712 -5.0776 25 6 7.3722 -2.7002 -2.7336 26 6 6.9950 -2.0989 -1.5478 27 1 -0.5399 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0990 1.3603 3.2260 34 1 2.5391 5.8658 4.4505 35 1 4.0730 -0.5248 -0.6265 36 1 4.6113 1.1022 -1.1075 37 1 8.0898 0.7609 0.0851 38 1 6.9472 1.7972 -0.8025 39 1 6.7531 1.5568 0.9505 40 1 6.1791 0.9564 -2.7231 41 1 6.8598 -0.1082 -4.8361 42 1 7.7043 -3.7278 -2.7364 43 1 7.0328 -2.6567 -0.6238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292237787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:19 Heat of formation + Delta-G solvation = -60.736416 kcal Electronic energy + Delta-G solvation = -24581.169217 eV Core-core repulsion = 20926.381604 eV Total energy + Delta-G solvation = -3654.787613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.85188 -41.13534 -40.01955 -37.34354 -35.84100 -34.98220 -33.71587 -32.06235 -31.07357 -29.95118 -28.44616 -26.82569 -24.90995 -24.10998 -23.61012 -21.44797 -20.97479 -19.68212 -19.07304 -18.66166 -18.03180 -17.45004 -17.02983 -16.54895 -16.48001 -16.23035 -15.95153 -15.54114 -15.31101 -14.92759 -14.67199 -14.39920 -14.32528 -14.15758 -14.08579 -13.88974 -13.51070 -13.33065 -13.06725 -12.89927 -12.76328 -12.50740 -12.28812 -12.14911 -12.04788 -11.94859 -11.92057 -11.72404 -11.57362 -10.82318 -10.49750 -10.29673 -10.01473 -9.48973 -9.38464 -8.33119 -6.37324 0.18157 0.32648 1.31408 1.35749 1.36278 1.44608 1.86524 2.31086 2.44044 2.66647 3.01538 3.33500 3.57186 3.72843 3.97408 3.99557 4.03881 4.13485 4.15849 4.27057 4.39187 4.43215 4.49140 4.54131 4.70607 4.78991 4.83803 4.89430 4.95427 5.02070 5.03313 5.09988 5.12239 5.20251 5.23055 5.31444 5.46010 5.49800 5.58538 5.68181 5.74232 5.94712 5.97143 6.25981 6.64145 6.74926 7.23784 7.48710 8.83673 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.003285 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.217808 B = 8522.277963 C = 9190.810872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.180 4.180 3 C 0.132 3.868 4 N -0.598 5.598 5 C 0.228 3.772 6 C -0.532 4.532 7 H 0.031 0.969 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.276 1.276 13 H -0.241 1.241 14 C 0.499 3.501 15 O -0.584 6.584 16 C -0.120 4.120 17 C -0.027 4.027 18 H 0.078 0.922 19 C -0.148 4.148 20 C -0.083 4.083 21 C -0.087 4.087 22 C -0.151 4.151 23 C 0.073 3.927 24 F -0.151 7.151 25 C -0.152 4.152 26 C -0.089 4.089 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.678 -16.999 -15.567 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C 0.010 3.990 4 N -0.329 5.329 5 C 0.105 3.895 6 C -0.571 4.571 7 H 0.050 0.950 8 C -0.186 4.186 9 N -0.585 5.585 10 Si 0.767 3.233 11 H -0.202 1.202 12 H -0.201 1.201 13 H -0.164 1.164 14 C 0.289 3.711 15 O -0.464 6.464 16 C -0.160 4.160 17 C -0.046 4.046 18 H 0.096 0.904 19 C -0.205 4.205 20 C -0.083 4.083 21 C -0.105 4.105 22 C -0.170 4.170 23 C 0.054 3.946 24 F -0.129 7.129 25 C -0.170 4.170 26 C -0.107 4.107 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.168 0.832 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.060 -16.839 -15.024 22.774 hybrid contribution -0.092 0.366 0.755 0.844 sum 2.968 -16.473 -14.270 21.995 Atomic orbital electron populations 1.24066 0.95612 1.02856 0.98450 1.23325 0.96684 0.98203 1.01738 1.20827 0.92709 0.96346 0.89157 1.48009 1.12187 1.60070 1.12593 1.19235 0.95159 0.92107 0.82968 1.21563 1.40286 0.93474 1.01728 0.95042 1.25804 0.96004 0.95332 1.01443 1.70047 1.49548 1.08436 1.30483 0.85770 0.79091 0.79349 0.79096 1.20190 1.20097 1.16375 1.21329 0.81067 0.77353 0.91359 1.90617 1.53300 1.58195 1.44314 1.21805 0.97405 1.03180 0.93570 1.19752 0.92937 0.97523 0.94388 0.90408 1.21911 0.99340 0.97342 1.01884 1.19898 0.99508 0.94359 0.94516 1.21063 0.97977 1.00715 0.90749 1.21319 1.01674 0.93535 1.00467 1.17975 1.02126 0.92786 0.81757 1.91471 1.89513 1.84430 1.47529 1.21316 1.02957 1.01690 0.91077 1.21146 0.97161 0.94121 0.98296 0.88445 0.86505 0.86337 0.90808 0.87728 0.94015 0.96440 0.92339 0.86612 0.87364 0.92131 0.92084 0.93618 0.83825 0.83294 0.83226 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 14.32 67.77 0.97 -2.58 16 2 C -0.18 -4.17 9.76 25.64 0.25 -3.92 16 3 C 0.13 3.78 5.66 85.63 0.48 4.27 16 4 N -0.60 -23.31 2.44 -830.49 -2.03 -25.33 16 5 C 0.23 10.97 4.23 85.63 0.36 11.33 16 6 C -0.53 -30.93 9.94 25.60 0.25 -30.68 16 7 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 8 C 0.01 0.71 5.47 84.66 0.46 1.18 16 9 N -0.94 -59.46 13.96 21.45 0.30 -59.17 16 10 Si 0.94 44.44 27.47 68.60 1.88 46.33 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 14 C 0.50 18.81 7.39 87.66 0.65 19.45 16 15 O -0.58 -27.37 13.55 -3.04 -0.04 -27.41 16 16 C -0.12 -2.97 3.46 29.85 0.10 -2.87 16 17 C -0.03 -0.65 2.21 -11.54 -0.03 -0.68 16 18 H 0.08 2.03 7.69 -2.39 -0.02 2.01 16 19 C -0.15 -4.11 8.75 71.98 0.63 -3.48 16 20 C -0.08 -1.58 4.78 -19.86 -0.09 -1.67 16 21 C -0.09 -1.50 8.76 22.26 0.19 -1.31 16 22 C -0.15 -2.54 10.03 22.31 0.22 -2.32 16 23 C 0.07 1.35 7.30 22.38 0.16 1.51 16 24 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 25 C -0.15 -2.51 10.03 22.31 0.22 -2.29 16 26 C -0.09 -1.53 9.67 22.26 0.22 -1.31 16 27 H 0.10 2.05 7.84 -2.91 -0.02 2.02 16 28 H 0.12 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.12 2.43 7.85 -2.91 -0.02 2.41 16 30 H 0.07 2.32 7.72 -2.39 -0.02 2.31 16 31 H 0.10 2.38 6.43 -2.39 -0.02 2.36 16 32 H 0.04 1.89 7.13 -2.39 -0.02 1.88 16 33 H 0.02 0.91 6.85 -2.38 -0.02 0.89 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.12 2.25 7.82 -2.38 -0.02 2.23 16 36 H 0.11 2.31 6.81 -2.39 -0.02 2.29 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.51 7.40 -2.38 -0.02 1.49 16 39 H 0.04 1.68 5.95 -2.38 -0.01 1.67 16 40 H 0.14 2.14 7.16 -2.91 -0.02 2.12 16 41 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.15 2.06 7.94 -2.91 -0.02 2.03 16 Total: -1.00 -74.01 360.47 6.90 -67.12 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.94 Total: 16.09 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 5.07 Total: -15.36 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.73 Total: -84.50 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.04 Total: -27.41 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -74.01 6.90 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292237787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.379 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds