Wall clock time and date at job start Tue Mar 31 2020 09:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.68140 * 2 1 4 4 C 1.53336 * 109.68703 * 239.44196 * 2 1 3 5 5 C 1.52728 * 108.38354 * 170.37074 * 4 2 1 6 6 C 1.50633 * 110.59469 * 51.01338 * 5 4 2 7 7 C 1.39131 * 117.75241 * 162.55370 * 6 5 4 8 8 F 1.35103 * 119.75464 * 359.75171 * 7 6 5 9 9 C 1.37945 * 120.54526 * 179.78551 * 7 6 5 10 10 C 1.38225 * 119.72408 * 359.95253 * 9 7 6 11 11 C 1.37945 * 119.79744 * 0.14019 * 10 9 7 12 12 C 1.37550 * 122.56555 * 342.50082 * 6 5 4 13 13 C 1.50637 * 122.61697 * 0.37782 * 12 6 5 14 14 H 1.08996 * 109.25940 * 222.14876 * 13 12 6 15 15 N 1.46499 * 109.25469 * 102.67792 * 13 12 6 16 16 C 1.34777 * 120.00065 * 84.47576 * 15 13 12 17 17 O 1.21283 * 120.00122 * 359.97438 * 16 15 13 18 18 C 1.50701 * 120.00078 * 180.02562 * 16 15 13 19 19 C 1.53004 * 109.47211 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47211 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99761 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99694 * 180.27574 * 20 19 18 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 19 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 19 25 25 H 1.48504 * 109.47209 * 89.99886 * 24 22 20 26 26 H 1.48501 * 109.47358 * 209.99377 * 24 22 20 27 27 H 1.48496 * 109.47341 * 329.99989 * 24 22 20 28 28 H 1.08999 * 109.46972 * 299.47210 * 1 2 3 29 29 H 1.08997 * 109.47195 * 59.47201 * 1 2 3 30 30 H 1.09007 * 109.47078 * 179.46983 * 1 2 3 31 31 H 1.09005 * 109.67828 * 290.09415 * 4 2 1 32 32 H 1.09002 * 109.68395 * 50.60884 * 4 2 1 33 33 H 1.08996 * 109.25172 * 171.29833 * 5 4 2 34 34 H 1.08996 * 109.25418 * 290.76767 * 5 4 2 35 35 H 1.07995 * 120.14227 * 179.97438 * 9 7 6 36 36 H 1.08003 * 120.10119 * 180.15725 * 10 9 7 37 37 H 1.08005 * 119.69570 * 179.97438 * 11 10 9 38 38 H 0.97000 * 120.00380 * 264.46772 * 15 13 12 39 39 H 1.09000 * 109.47827 * 59.99362 * 18 16 15 40 40 H 1.09007 * 109.47098 * 299.99085 * 18 16 15 41 41 H 1.09000 * 109.47211 * 59.99027 * 19 18 16 42 42 H 1.09007 * 109.46376 * 299.99569 * 19 18 16 43 43 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0465 -0.7340 -1.2432 5 6 3.5542 -0.5111 -1.3425 6 6 4.2260 -0.8423 -0.0356 7 6 5.6010 -1.0537 -0.0492 8 9 6.2818 -0.9629 -1.2127 9 6 6.2755 -1.3561 1.1155 10 6 5.5795 -1.4489 2.3061 11 6 4.2158 -1.2415 2.3209 12 6 3.5337 -0.9392 1.1491 13 6 2.0445 -0.7305 1.2387 14 1 1.8172 -0.1387 2.1253 15 7 1.3798 -2.0318 1.3431 16 6 1.2510 -2.6283 2.5448 17 8 1.6859 -2.0880 3.5397 18 6 0.5677 -3.9672 2.6521 19 6 0.5555 -4.4179 4.1142 20 6 -0.1284 -5.7565 4.2215 21 1 -0.5160 -6.2374 3.3356 22 6 -0.2647 -6.3642 5.4516 23 7 0.2069 -5.7784 6.5304 24 14 -1.1194 -8.0198 5.5857 25 1 -0.1187 -9.1069 5.4369 26 1 -1.7775 -8.1311 6.9122 27 1 -2.1412 -8.1377 4.5147 28 1 -0.3633 0.5056 0.8947 29 1 -0.3633 0.5220 -0.8852 30 1 -0.3633 -1.0277 -0.0095 31 1 1.8382 -1.8002 -1.1531 32 1 1.5570 -0.3383 -2.1331 33 1 3.9609 -1.1488 -2.1273 34 1 3.7476 0.5324 -1.5909 35 1 7.3429 -1.5194 1.0973 36 1 6.1018 -1.6828 3.2220 37 1 3.6735 -1.3148 3.2521 38 1 1.0321 -2.4641 0.5474 39 1 1.1066 -4.6995 2.0510 40 1 -0.4567 -3.8824 2.2892 41 1 0.0168 -3.6856 4.7156 42 1 1.5800 -4.5027 4.4766 43 1 0.1107 -6.2057 7.3958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292246137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:29 Heat of formation + Delta-G solvation = -84.553396 kcal Electronic energy + Delta-G solvation = -25143.966006 eV Core-core repulsion = 21488.145611 eV Total energy + Delta-G solvation = -3655.820395 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.96574 -40.69755 -38.64672 -36.99744 -33.88339 -33.44348 -31.96974 -31.37347 -30.47977 -28.97073 -26.75030 -25.44181 -23.69840 -22.20843 -22.02282 -21.71035 -19.86906 -19.13974 -17.49684 -17.02278 -16.41236 -15.96149 -15.80252 -15.68017 -15.61979 -15.08406 -14.53657 -14.42218 -14.17645 -13.78073 -13.74598 -13.44124 -13.22179 -12.93943 -12.47945 -12.23411 -12.17106 -12.00607 -11.88194 -11.67235 -11.59229 -11.16337 -11.01776 -10.93563 -10.71573 -10.60853 -10.49418 -9.96090 -9.66725 -9.28048 -9.09991 -8.84887 -8.75216 -8.59455 -8.32364 -5.96727 -4.00939 1.10168 1.15499 3.19995 3.32912 3.36070 3.39556 3.42038 3.78213 4.13444 4.29112 4.45781 4.47553 4.56359 4.66831 4.84142 4.94795 5.09937 5.23083 5.27814 5.32128 5.38471 5.44795 5.50790 5.51742 5.61993 5.70577 5.72694 5.83270 5.91046 5.96988 6.08341 6.12677 6.14111 6.21707 6.24424 6.41772 6.52920 6.70146 6.88751 6.90474 7.73721 7.85751 7.86370 8.06387 8.38368 8.75924 9.07541 9.62730 11.14166 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.003490 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.699938 B = 8020.890129 C = 8838.623280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.101 4.101 7 C 0.082 3.918 8 F -0.144 7.144 9 C -0.150 4.150 10 C -0.100 4.100 11 C -0.106 4.106 12 C -0.067 4.067 13 C 0.190 3.810 14 H 0.099 0.901 15 N -0.732 5.732 16 C 0.513 3.487 17 O -0.533 6.533 18 C -0.131 4.131 19 C 0.039 3.961 20 C -0.527 4.527 21 H 0.055 0.945 22 C 0.059 3.941 23 N -0.890 5.890 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.397 0.603 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 13.243 -17.172 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.152 4.152 5 C -0.116 4.116 6 C -0.103 4.103 7 C 0.062 3.938 8 F -0.122 7.122 9 C -0.169 4.169 10 C -0.118 4.118 11 C -0.125 4.125 12 C -0.069 4.069 13 C 0.085 3.915 14 H 0.116 0.884 15 N -0.386 5.386 16 C 0.302 3.698 17 O -0.408 6.408 18 C -0.170 4.170 19 C 0.001 3.999 20 C -0.566 4.566 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.232 0.768 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.154 13.609 -16.276 22.390 hybrid contribution -0.234 -1.215 -0.409 1.304 sum 6.920 12.394 -16.684 21.906 Atomic orbital electron populations 1.21789 0.93932 1.02558 1.01987 1.21449 0.96577 0.99822 0.93926 0.89628 1.21639 0.94546 1.01066 0.97947 1.20389 0.95323 1.02156 0.93698 1.19583 0.91623 1.02916 0.96138 1.17606 0.89832 1.04693 0.81626 1.91454 1.79845 1.94028 1.46921 1.21042 1.00751 1.03214 0.91902 1.21023 0.94432 0.98854 0.97469 1.21826 0.94358 0.96686 0.99591 1.19845 0.96043 0.99225 0.91782 1.19634 0.86588 0.85921 0.99327 0.88360 1.46366 1.60846 1.21098 1.10302 1.21561 0.78397 0.87839 0.81993 1.90595 1.48377 1.65543 1.36318 1.21874 0.99587 0.91107 1.04479 1.18884 0.98136 0.95642 0.87230 1.21224 1.37784 1.04310 0.93240 0.92668 1.25008 0.95712 0.97668 0.95902 1.69990 1.45856 1.38485 0.98502 0.86609 0.79732 0.84329 0.77387 1.20683 1.21221 1.19894 0.92205 0.92401 0.92060 0.91356 0.90764 0.90477 0.90347 0.85030 0.84972 0.83379 0.76790 0.90353 0.90286 0.95804 0.95861 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.93 37.16 0.33 -0.87 16 2 C -0.10 -0.88 2.53 -90.58 -0.23 -1.11 16 3 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 4 C -0.11 -0.92 5.24 -26.70 -0.14 -1.06 16 5 C -0.08 -0.72 5.34 -28.06 -0.15 -0.87 16 6 C -0.10 -1.20 5.74 -104.57 -0.60 -1.80 16 7 C 0.08 1.01 7.21 -39.36 -0.28 0.73 16 8 F -0.14 -1.77 16.47 2.25 0.04 -1.73 16 9 C -0.15 -1.78 10.01 -39.69 -0.40 -2.18 16 10 C -0.10 -1.26 10.05 -39.69 -0.40 -1.66 16 11 C -0.11 -1.53 9.12 -39.44 -0.36 -1.89 16 12 C -0.07 -0.88 5.29 -104.65 -0.55 -1.43 16 13 C 0.19 2.31 2.07 -69.25 -0.14 2.16 16 14 H 0.10 1.35 7.55 -51.93 -0.39 0.96 16 15 N -0.73 -9.72 4.16 -55.10 -0.23 -9.95 16 16 C 0.51 9.27 7.58 -10.98 -0.08 9.19 16 17 O -0.53 -11.47 13.25 5.55 0.07 -11.40 16 18 C -0.13 -2.58 5.64 -27.88 -0.16 -2.73 16 19 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 20 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16 21 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 24 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.52 6.89 -51.93 -0.36 0.17 16 31 H 0.07 0.57 6.76 -51.93 -0.35 0.22 16 32 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.15 2.47 5.84 -52.48 -0.31 2.16 16 38 H 0.40 4.32 6.52 -40.82 -0.27 4.05 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -32.46 348.31 -9.11 -41.58 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.27 Total: 2.34 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -3.69 Total: -16.17 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.51 Total: -36.40 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.46 -9.11 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292246137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.977 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds