Wall clock time and date at job start Tue Mar 31 2020 09:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.68140 * 2 1 4 4 C 1.53336 * 109.68703 * 239.44196 * 2 1 3 5 5 C 1.52728 * 108.38354 * 170.37074 * 4 2 1 6 6 C 1.50633 * 110.59469 * 51.01338 * 5 4 2 7 7 C 1.39131 * 117.75241 * 162.55370 * 6 5 4 8 8 F 1.35103 * 119.75464 * 359.75171 * 7 6 5 9 9 C 1.37945 * 120.54526 * 179.78551 * 7 6 5 10 10 C 1.38225 * 119.72408 * 359.95253 * 9 7 6 11 11 C 1.37945 * 119.79744 * 0.14019 * 10 9 7 12 12 C 1.37550 * 122.56555 * 342.50082 * 6 5 4 13 13 C 1.50637 * 122.61697 * 0.37782 * 12 6 5 14 14 H 1.08996 * 109.25940 * 222.14876 * 13 12 6 15 15 N 1.46499 * 109.25469 * 102.67792 * 13 12 6 16 16 C 1.34777 * 120.00065 * 84.47576 * 15 13 12 17 17 O 1.21283 * 120.00122 * 359.97438 * 16 15 13 18 18 C 1.50701 * 120.00078 * 180.02562 * 16 15 13 19 19 C 1.53004 * 109.47211 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47211 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99761 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99694 * 180.27574 * 20 19 18 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 19 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 19 25 25 H 1.48504 * 109.47209 * 89.99886 * 24 22 20 26 26 H 1.48501 * 109.47358 * 209.99377 * 24 22 20 27 27 H 1.48496 * 109.47341 * 329.99989 * 24 22 20 28 28 H 1.08999 * 109.46972 * 299.47210 * 1 2 3 29 29 H 1.08997 * 109.47195 * 59.47201 * 1 2 3 30 30 H 1.09007 * 109.47078 * 179.46983 * 1 2 3 31 31 H 1.09005 * 109.67828 * 290.09415 * 4 2 1 32 32 H 1.09002 * 109.68395 * 50.60884 * 4 2 1 33 33 H 1.08996 * 109.25172 * 171.29833 * 5 4 2 34 34 H 1.08996 * 109.25418 * 290.76767 * 5 4 2 35 35 H 1.07995 * 120.14227 * 179.97438 * 9 7 6 36 36 H 1.08003 * 120.10119 * 180.15725 * 10 9 7 37 37 H 1.08005 * 119.69570 * 179.97438 * 11 10 9 38 38 H 0.97000 * 120.00380 * 264.46772 * 15 13 12 39 39 H 1.09000 * 109.47827 * 59.99362 * 18 16 15 40 40 H 1.09007 * 109.47098 * 299.99085 * 18 16 15 41 41 H 1.09000 * 109.47211 * 59.99027 * 19 18 16 42 42 H 1.09007 * 109.46376 * 299.99569 * 19 18 16 43 43 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0465 -0.7340 -1.2432 5 6 3.5542 -0.5111 -1.3425 6 6 4.2260 -0.8423 -0.0356 7 6 5.6010 -1.0537 -0.0492 8 9 6.2818 -0.9629 -1.2127 9 6 6.2755 -1.3561 1.1155 10 6 5.5795 -1.4489 2.3061 11 6 4.2158 -1.2415 2.3209 12 6 3.5337 -0.9392 1.1491 13 6 2.0445 -0.7305 1.2387 14 1 1.8172 -0.1387 2.1253 15 7 1.3798 -2.0318 1.3431 16 6 1.2510 -2.6283 2.5448 17 8 1.6859 -2.0880 3.5397 18 6 0.5677 -3.9672 2.6521 19 6 0.5555 -4.4179 4.1142 20 6 -0.1284 -5.7565 4.2215 21 1 -0.5160 -6.2374 3.3356 22 6 -0.2647 -6.3642 5.4516 23 7 0.2069 -5.7784 6.5304 24 14 -1.1194 -8.0198 5.5857 25 1 -0.1187 -9.1069 5.4369 26 1 -1.7775 -8.1311 6.9122 27 1 -2.1412 -8.1377 4.5147 28 1 -0.3633 0.5056 0.8947 29 1 -0.3633 0.5220 -0.8852 30 1 -0.3633 -1.0277 -0.0095 31 1 1.8382 -1.8002 -1.1531 32 1 1.5570 -0.3383 -2.1331 33 1 3.9609 -1.1488 -2.1273 34 1 3.7476 0.5324 -1.5909 35 1 7.3429 -1.5194 1.0973 36 1 6.1018 -1.6828 3.2220 37 1 3.6735 -1.3148 3.2521 38 1 1.0321 -2.4641 0.5474 39 1 1.1066 -4.6995 2.0510 40 1 -0.4567 -3.8824 2.2892 41 1 0.0168 -3.6856 4.7156 42 1 1.5800 -4.5027 4.4766 43 1 0.1107 -6.2057 7.3958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292246137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:29 Heat of formation + Delta-G solvation = -102.878003 kcal Electronic energy + Delta-G solvation = -25144.760621 eV Core-core repulsion = 21488.145611 eV Total energy + Delta-G solvation = -3656.615010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.92854 -41.75081 -39.97455 -37.96331 -35.57379 -34.92991 -33.20616 -32.70940 -31.84469 -29.86376 -28.07047 -26.99414 -24.61860 -23.74095 -22.97005 -22.85934 -21.35603 -20.07812 -18.86074 -18.45134 -17.66962 -17.26583 -16.98244 -16.76041 -16.67035 -16.44010 -16.34878 -15.54983 -15.13601 -14.83059 -14.73941 -14.56820 -14.33251 -14.16927 -13.96610 -13.77290 -13.21122 -13.12305 -12.97527 -12.85360 -12.80292 -12.59065 -12.47319 -12.33647 -11.89697 -11.74579 -11.61526 -11.49812 -11.32414 -11.26280 -10.73190 -10.55939 -10.08577 -9.81085 -9.60191 -8.17296 -6.30962 0.09624 0.15852 1.42317 1.44623 1.55533 1.74986 2.21840 2.43779 2.68360 3.15903 3.16859 3.46817 3.57509 3.81204 3.87379 3.94649 4.07866 4.15478 4.25043 4.31535 4.50474 4.52267 4.57280 4.61004 4.65460 4.69204 4.77221 4.94139 5.01544 5.06715 5.08423 5.09930 5.11097 5.26804 5.31906 5.40646 5.46107 5.49395 5.54026 5.55887 5.65813 5.86883 5.91142 6.19305 6.63187 6.87594 7.37917 7.40169 8.95160 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017665 B = 0.003490 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.699938 B = 8020.890129 C = 8838.623280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.096 0.904 4 C -0.109 4.109 5 C -0.079 4.079 6 C -0.097 4.097 7 C 0.073 3.927 8 F -0.141 7.141 9 C -0.147 4.147 10 C -0.108 4.108 11 C -0.131 4.131 12 C -0.076 4.076 13 C 0.190 3.810 14 H 0.074 0.926 15 N -0.707 5.707 16 C 0.514 3.486 17 O -0.576 6.576 18 C -0.120 4.120 19 C 0.045 3.955 20 C -0.543 4.543 21 H 0.074 0.926 22 C -0.005 4.005 23 N -0.937 5.937 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.286 1.286 27 H -0.255 1.255 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.413 0.587 39 H 0.097 0.903 40 H 0.103 0.897 41 H -0.016 1.016 42 H -0.018 1.018 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 12.776 -20.651 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.147 4.147 5 C -0.116 4.116 6 C -0.098 4.098 7 C 0.054 3.946 8 F -0.119 7.119 9 C -0.166 4.166 10 C -0.126 4.126 11 C -0.149 4.149 12 C -0.078 4.078 13 C 0.085 3.915 14 H 0.092 0.908 15 N -0.361 5.361 16 C 0.303 3.697 17 O -0.455 6.455 18 C -0.160 4.160 19 C 0.008 3.992 20 C -0.581 4.581 21 H 0.092 0.908 22 C -0.202 4.202 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.212 1.212 27 H -0.179 1.179 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.135 0.865 38 H 0.251 0.749 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.003 0.997 42 H 0.000 1.000 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.514 13.151 -19.829 24.669 hybrid contribution 0.040 -1.002 0.675 1.209 sum 6.554 12.149 -19.154 23.610 Atomic orbital electron populations 1.21793 0.93238 1.02629 1.02499 1.21439 0.97011 0.99948 0.92472 0.88529 1.21655 0.93779 1.00956 0.98286 1.20505 0.95894 1.03189 0.91971 1.19854 0.91607 1.01517 0.96860 1.17769 0.90228 1.04783 0.81813 1.91462 1.79792 1.94007 1.46689 1.21270 1.01872 1.02188 0.91284 1.21155 0.93891 0.98955 0.98554 1.21753 0.95295 0.98682 0.99195 1.19861 0.96313 0.99804 0.91795 1.19741 0.86391 0.84903 1.00418 0.90753 1.46042 1.59590 1.21279 1.09199 1.21238 0.78157 0.87442 0.82869 1.90601 1.50261 1.66473 1.38195 1.21633 1.01720 0.92560 1.00108 1.18654 0.94822 0.94742 0.91021 1.21720 1.37517 1.04853 0.94035 0.90809 1.26090 0.96429 1.02229 0.95475 1.70169 1.47512 1.40727 0.99257 0.85365 0.78779 0.78650 0.77724 1.19829 1.21165 1.17920 0.93556 0.90048 0.92237 0.91521 0.87902 0.89751 0.88791 0.82788 0.83985 0.86512 0.74885 0.88435 0.87841 0.99738 1.00004 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.93 71.98 0.64 -1.39 16 2 C -0.09 -1.39 2.53 -10.77 -0.03 -1.41 16 3 H 0.10 1.34 8.10 -2.39 -0.02 1.32 16 4 C -0.11 -1.35 5.24 30.62 0.16 -1.18 16 5 C -0.08 -1.19 5.34 29.74 0.16 -1.03 16 6 C -0.10 -2.15 5.74 -19.83 -0.11 -2.26 16 7 C 0.07 1.70 7.21 22.41 0.16 1.86 16 8 F -0.14 -3.14 16.47 44.97 0.74 -2.40 16 9 C -0.15 -3.37 10.01 22.20 0.22 -3.14 16 10 C -0.11 -2.80 10.05 22.20 0.22 -2.58 16 11 C -0.13 -3.98 9.12 22.36 0.20 -3.78 16 12 C -0.08 -1.98 5.29 -19.88 -0.11 -2.09 16 13 C 0.19 4.58 2.07 44.14 0.09 4.67 16 14 H 0.07 2.17 7.55 -2.39 -0.02 2.15 16 15 N -0.71 -18.45 4.16 -446.62 -1.86 -20.30 16 16 C 0.51 19.16 7.58 87.66 0.66 19.82 16 17 O -0.58 -26.66 13.25 -3.04 -0.04 -26.70 16 18 C -0.12 -4.77 5.64 29.85 0.17 -4.61 16 19 C 0.05 2.50 4.26 29.85 0.13 2.63 16 20 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 21 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 22 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 23 N -0.94 -59.30 13.29 21.45 0.28 -59.01 16 24 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.86 6.89 -2.38 -0.02 0.84 16 31 H 0.07 0.87 6.76 -2.38 -0.02 0.85 16 32 H 0.10 0.78 8.13 -2.39 -0.02 0.76 16 33 H 0.08 1.21 7.85 -2.39 -0.02 1.19 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.12 4.32 5.84 -2.91 -0.02 4.31 16 38 H 0.41 8.14 6.52 -92.71 -0.60 7.54 16 39 H 0.10 3.48 8.14 -2.39 -0.02 3.47 16 40 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 41 H -0.02 -0.99 8.10 -2.39 -0.02 -1.00 16 42 H -0.02 -1.16 8.10 -2.38 -0.02 -1.18 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.47 348.31 4.84 -69.63 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.42 Total: 17.46 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.27 Total: -24.95 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.57 Total: -79.32 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.70 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.74 Total: -2.40 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -74.47 4.84 -69.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292246137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.250 kcal (2) G-P(sol) polarization free energy of solvation -74.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds