Wall clock time and date at job start Tue Mar 31 2020 09:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.68851 * 2 1 4 4 C 1.53327 * 109.71669 * 239.45475 * 2 1 3 5 5 C 1.52738 * 108.38398 * 170.35598 * 4 2 1 6 6 C 1.50625 * 110.59220 * 51.01562 * 5 4 2 7 7 C 1.39135 * 117.75015 * 162.55845 * 6 5 4 8 8 F 1.35105 * 119.75643 * 359.75077 * 7 6 5 9 9 C 1.38160 * 120.49398 * 179.75183 * 7 6 5 10 10 C 1.38233 * 119.74258 * 359.97438 * 9 7 6 11 11 C 1.37944 * 119.79470 * 0.11931 * 10 9 7 12 12 C 1.37627 * 122.58912 * 342.49244 * 6 5 4 13 13 C 1.50639 * 122.56111 * 0.39718 * 12 6 5 14 14 H 1.09004 * 109.22093 * 102.65791 * 13 12 6 15 15 N 1.46499 * 109.25762 * 222.10897 * 13 12 6 16 16 C 1.34777 * 119.99673 * 276.09659 * 15 13 12 17 17 O 1.21278 * 120.00348 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99618 * 179.97438 * 16 15 13 19 19 C 1.52999 * 109.47244 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47057 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00538 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99661 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00186 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00030 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99863 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00044 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00037 * 24 22 20 28 28 H 1.08997 * 109.46832 * 299.47020 * 1 2 3 29 29 H 1.08997 * 109.47097 * 59.47521 * 1 2 3 30 30 H 1.08999 * 109.46961 * 179.47393 * 1 2 3 31 31 H 1.09005 * 109.68800 * 290.07623 * 4 2 1 32 32 H 1.09002 * 109.68598 * 50.59558 * 4 2 1 33 33 H 1.09000 * 109.25325 * 171.30423 * 5 4 2 34 34 H 1.09000 * 109.24769 * 290.73245 * 5 4 2 35 35 H 1.08003 * 120.13382 * 179.97438 * 9 7 6 36 36 H 1.07995 * 120.09901 * 180.09575 * 10 9 7 37 37 H 1.07998 * 119.69458 * 179.97438 * 11 10 9 38 38 H 0.96997 * 119.99740 * 96.08946 * 15 13 12 39 39 H 1.09002 * 109.47387 * 59.99847 * 18 16 15 40 40 H 1.08998 * 109.46985 * 299.99880 * 18 16 15 41 41 H 1.09002 * 109.46997 * 59.99677 * 19 18 16 42 42 H 1.09000 * 109.46625 * 300.00102 * 19 18 16 43 43 H 0.97001 * 119.99697 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0262 0.0000 4 6 2.0473 -0.7336 -1.2431 5 6 3.5549 -0.5099 -1.3418 6 6 4.2264 -0.8410 -0.0348 7 6 5.6016 -1.0517 -0.0481 8 9 6.2828 -0.9603 -1.2113 9 6 6.2759 -1.3538 1.1193 10 6 5.5789 -1.4468 2.3095 11 6 4.2151 -1.2399 2.3230 12 6 3.5339 -0.9384 1.1505 13 6 2.0445 -0.7305 1.2388 14 1 1.5509 -1.6993 1.3158 15 7 1.7374 0.0641 2.4306 16 6 1.6179 -0.5387 3.6301 17 8 1.7641 -1.7391 3.7227 18 6 1.3025 0.2788 4.8562 19 6 1.2217 -0.6414 6.0758 20 6 0.9057 0.1761 7.3017 21 1 0.7759 1.2451 7.2194 22 6 0.7823 -0.4408 8.5287 23 7 0.9399 -1.7427 8.6290 24 14 0.3914 0.5725 10.0484 25 1 -1.0811 0.6577 10.2213 26 1 0.9510 1.9389 9.8898 27 1 0.9934 -0.0734 11.2424 28 1 -0.3633 0.5056 0.8947 29 1 -0.3633 0.5219 -0.8852 30 1 -0.3633 -1.0276 -0.0094 31 1 1.8395 -1.7998 -1.1533 32 1 1.5578 -0.3380 -2.1331 33 1 3.9622 -1.1472 -2.1267 34 1 3.7478 0.5336 -1.5907 35 1 7.3434 -1.5166 1.1023 36 1 6.1004 -1.6810 3.2257 37 1 3.6721 -1.3134 3.2537 38 1 1.6201 1.0241 2.3564 39 1 0.3469 0.7850 4.7195 40 1 2.0871 1.0194 5.0107 41 1 2.1771 -1.1479 6.2127 42 1 0.4369 -1.3817 5.9210 43 1 1.1426 -2.2689 7.8397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292246141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:31 Heat of formation + Delta-G solvation = -106.900454 kcal Electronic energy + Delta-G solvation = -25086.385338 eV Core-core repulsion = 21429.595902 eV Total energy + Delta-G solvation = -3656.789436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.96439 -41.85660 -40.09210 -37.93559 -35.98174 -35.33230 -33.16797 -32.75109 -31.65913 -29.88853 -27.89327 -26.81050 -24.76053 -23.85822 -23.00653 -22.79667 -21.41703 -20.52506 -19.03141 -18.53606 -17.83376 -17.62820 -17.22893 -17.04522 -16.67700 -16.28353 -15.68316 -15.60922 -15.26695 -14.92444 -14.86928 -14.59766 -14.32085 -14.11081 -13.99405 -13.96456 -13.63363 -13.38469 -12.88317 -12.83378 -12.73167 -12.62469 -12.33580 -12.07321 -12.01186 -11.86407 -11.76564 -11.61847 -11.50136 -10.96512 -10.65133 -10.55206 -10.21761 -9.82731 -9.64628 -8.68683 -6.40506 0.05878 0.10905 1.54301 1.59081 1.64641 1.81372 2.11710 2.53644 2.60594 3.12092 3.17628 3.42432 3.50784 3.75733 3.83207 3.89404 4.01656 4.05633 4.18373 4.27627 4.35108 4.38416 4.41764 4.49661 4.61138 4.70406 4.72935 4.88936 4.91721 4.96674 5.01213 5.03331 5.05482 5.18271 5.26220 5.29080 5.32084 5.38026 5.38575 5.42303 5.56483 5.85352 5.94609 6.18493 6.50542 6.54460 7.24201 7.45069 8.71277 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.003377 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.973578 B = 8290.424072 C = 9315.144994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.097 0.903 4 C -0.106 4.106 5 C -0.079 4.079 6 C -0.101 4.101 7 C 0.077 3.923 8 F -0.139 7.139 9 C -0.148 4.148 10 C -0.107 4.107 11 C -0.139 4.139 12 C -0.074 4.074 13 C 0.191 3.809 14 H 0.075 0.925 15 N -0.708 5.708 16 C 0.516 3.484 17 O -0.578 6.578 18 C -0.115 4.115 19 C 0.029 3.971 20 C -0.618 4.618 21 H 0.066 0.934 22 C -0.045 4.045 23 N -0.940 5.940 24 Si 1.125 2.875 25 H -0.271 1.271 26 H -0.261 1.261 27 H -0.287 1.287 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.417 0.583 39 H 0.104 0.896 40 H 0.101 0.899 41 H -0.020 1.020 42 H -0.020 1.020 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 7.866 -24.180 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.115 0.885 4 C -0.143 4.143 5 C -0.115 4.115 6 C -0.102 4.102 7 C 0.058 3.942 8 F -0.118 7.118 9 C -0.167 4.167 10 C -0.125 4.125 11 C -0.157 4.157 12 C -0.075 4.075 13 C 0.086 3.914 14 H 0.093 0.907 15 N -0.361 5.361 16 C 0.305 3.695 17 O -0.458 6.458 18 C -0.154 4.154 19 C -0.009 4.009 20 C -0.656 4.656 21 H 0.084 0.916 22 C -0.241 4.241 23 N -0.578 5.578 24 Si 0.945 3.055 25 H -0.197 1.197 26 H -0.185 1.185 27 H -0.213 1.213 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.254 0.746 39 H 0.122 0.878 40 H 0.119 0.881 41 H -0.002 1.002 42 H -0.002 1.002 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.954 6.936 -22.566 24.122 hybrid contribution 0.645 -0.334 -1.312 1.499 sum 5.599 6.601 -23.878 25.399 Atomic orbital electron populations 1.21821 0.93322 1.02126 1.02977 1.21402 0.96872 1.00336 0.92038 0.88484 1.21601 0.93870 1.00864 0.98007 1.20516 0.95685 1.03388 0.91944 1.19850 0.91632 1.01939 0.96816 1.17782 0.90119 1.04481 0.81807 1.91466 1.79744 1.93951 1.46596 1.21302 1.01865 1.02348 0.91137 1.21131 0.93847 0.98958 0.98536 1.21756 0.95450 0.99217 0.99273 1.19930 0.96335 0.99374 0.91897 1.19810 0.89581 0.96148 0.85842 0.90719 1.45972 1.72006 1.12091 1.06019 1.21188 0.74587 0.88184 0.85571 1.90656 1.51377 1.17228 1.86535 1.21526 1.04179 0.98792 0.90945 1.18839 0.94097 0.94504 0.93453 1.22522 1.52361 0.96053 0.94653 0.91617 1.27615 0.93497 0.97401 1.05623 1.70874 1.46912 1.07193 1.32773 0.82860 0.77401 0.74020 0.71190 1.19691 1.18542 1.21272 0.92744 0.89843 0.93364 0.91962 0.87621 0.89617 0.88566 0.82673 0.84294 0.86941 0.74564 0.87772 0.88112 1.00182 1.00163 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.11 71.98 0.66 -1.40 16 2 C -0.09 -1.33 2.24 -10.77 -0.02 -1.35 16 3 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 4 C -0.11 -1.36 5.29 30.62 0.16 -1.20 16 5 C -0.08 -1.18 5.34 29.74 0.16 -1.02 16 6 C -0.10 -2.24 5.74 -19.82 -0.11 -2.35 16 7 C 0.08 1.78 7.22 22.47 0.16 1.95 16 8 F -0.14 -3.04 16.47 44.97 0.74 -2.30 16 9 C -0.15 -3.39 10.02 22.25 0.22 -3.17 16 10 C -0.11 -2.86 10.05 22.20 0.22 -2.63 16 11 C -0.14 -4.32 8.99 22.36 0.20 -4.12 16 12 C -0.07 -1.94 5.55 -19.87 -0.11 -2.05 16 13 C 0.19 4.60 1.97 44.14 0.09 4.68 16 14 H 0.07 2.22 7.56 -2.38 -0.02 2.21 16 15 N -0.71 -18.22 4.47 -446.60 -2.00 -20.22 16 16 C 0.52 18.93 6.34 87.66 0.56 19.49 16 17 O -0.58 -26.65 13.73 -3.02 -0.04 -26.69 16 18 C -0.11 -4.51 5.64 29.85 0.17 -4.34 16 19 C 0.03 1.56 3.57 29.85 0.11 1.67 16 20 C -0.62 -35.34 9.11 25.60 0.23 -35.11 16 21 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 22 C -0.04 -2.64 5.46 84.65 0.46 -2.17 16 23 N -0.94 -61.02 13.65 21.45 0.29 -60.73 16 24 Si 1.13 50.28 29.90 68.60 2.05 52.33 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 27 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 28 H 0.05 0.85 7.88 -2.39 -0.02 0.83 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 32 H 0.11 0.83 8.13 -2.39 -0.02 0.81 16 33 H 0.09 1.21 7.86 -2.39 -0.02 1.19 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.11 4.27 4.37 -2.91 -0.01 4.26 16 38 H 0.42 7.86 8.59 -92.71 -0.80 7.06 16 39 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 41 H -0.02 -1.23 7.97 -2.39 -0.02 -1.25 16 42 H -0.02 -1.22 7.96 -2.39 -0.02 -1.24 16 43 H 0.25 16.99 7.22 -92.71 -0.67 16.32 16 Total: -1.00 -76.09 349.47 4.52 -71.57 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.32 Total: 19.17 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.15 Total: -33.13 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.70 Total: -80.95 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.04 Total: -26.69 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.74 Total: -2.30 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Total: -76.09 4.52 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292246141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.331 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds