Wall clock time and date at job start Tue Mar 31 2020 09:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50701 * 120.00309 * 2 1 4 4 N 1.46499 * 109.47313 * 125.00234 * 3 2 1 5 5 C 1.46502 * 119.99642 * 270.00171 * 4 3 2 6 6 C 1.50698 * 109.47172 * 269.99676 * 5 4 3 7 7 H 1.08001 * 120.00022 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00442 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99736 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00385 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46911 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47052 * 120.00082 * 10 8 6 13 13 H 1.48493 * 109.47120 * 240.00394 * 10 8 6 14 14 C 1.34777 * 120.00254 * 90.00006 * 4 3 2 15 15 O 1.21283 * 119.99716 * 180.02562 * 14 4 3 16 16 C 1.50700 * 119.99799 * 359.97438 * 14 4 3 17 17 C 1.53000 * 109.46756 * 180.02562 * 16 14 4 18 18 H 1.08995 * 109.47548 * 55.00024 * 17 16 14 19 19 C 1.53005 * 109.47284 * 294.99909 * 17 16 14 20 20 C 1.50699 * 109.47010 * 175.00547 * 17 16 14 21 21 C 1.38264 * 119.99175 * 60.01817 * 20 17 16 22 22 C 1.38223 * 120.05372 * 179.97438 * 21 20 17 23 23 C 1.38223 * 120.02448 * 0.02779 * 22 21 20 24 24 C 1.38437 * 119.97390 * 359.69495 * 23 22 21 25 25 F 1.35099 * 120.02356 * 180.32333 * 24 23 22 26 26 C 1.38183 * 119.98467 * 240.00244 * 20 17 16 27 27 H 1.08000 * 120.00296 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00212 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00171 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46944 * 5.00023 * 3 2 1 31 31 H 1.09001 * 109.47043 * 245.00064 * 3 2 1 32 32 H 1.08994 * 109.47614 * 29.99688 * 5 4 3 33 33 H 1.09007 * 109.46870 * 150.00110 * 5 4 3 34 34 H 0.96992 * 120.00053 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46822 * 60.00550 * 16 14 4 36 36 H 1.08997 * 109.47233 * 299.99948 * 16 14 4 37 37 H 1.08997 * 109.47176 * 300.00976 * 19 17 16 38 38 H 1.09007 * 109.46603 * 59.99932 * 19 17 16 39 39 H 1.08994 * 109.47161 * 179.97438 * 19 17 16 40 40 H 1.08004 * 119.96758 * 359.97438 * 21 20 17 41 41 H 1.07999 * 119.98701 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.01081 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.01017 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3435 2.4804 7 1 3.3034 3.8370 1.6365 8 6 2.5185 4.0667 3.6082 9 7 1.9590 3.4659 4.6357 10 14 2.8717 5.8997 3.6768 11 1 3.5007 6.3306 2.4025 12 1 1.6010 6.6415 3.8778 13 1 3.7947 6.1841 4.8047 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8878 1.9192 16 6 4.6968 0.3172 -0.3480 17 6 6.1530 -0.1414 -0.2470 18 1 6.2539 -0.8527 0.5727 19 6 7.0520 1.0688 0.0143 20 6 6.5624 -0.8016 -1.5384 21 6 6.5180 -0.0898 -2.7229 22 6 6.8938 -0.6939 -3.9080 23 6 7.3139 -2.0107 -3.9102 24 6 7.3643 -2.7227 -2.7240 25 9 7.7810 -4.0078 -2.7241 26 6 6.9824 -2.1180 -1.5381 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0990 1.3602 3.2259 34 1 1.7301 3.9746 5.4292 35 1 4.6120 1.0936 -1.1084 36 1 4.0677 -0.5298 -0.6216 37 1 6.9510 1.7802 -0.8053 38 1 6.7557 1.5464 0.9484 39 1 8.0892 0.7420 0.0867 40 1 6.1894 0.9390 -2.7221 41 1 6.8590 -0.1368 -4.8325 42 1 7.6078 -2.4824 -4.8363 43 1 7.0177 -2.6736 -0.6126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292306233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:25 Heat of formation + Delta-G solvation = -47.514479 kcal Electronic energy + Delta-G solvation = -24599.015023 eV Core-core repulsion = 20944.800756 eV Total energy + Delta-G solvation = -3654.214267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.03806 -39.89508 -38.85515 -35.88576 -34.77773 -33.17125 -32.07344 -30.94055 -29.86590 -28.41292 -26.84173 -25.35608 -23.92601 -22.94248 -22.55736 -20.39624 -19.89887 -18.27254 -17.43916 -16.64075 -16.48955 -16.30057 -16.09401 -15.74379 -15.52065 -14.97143 -14.51303 -14.40637 -14.10683 -13.78564 -13.58913 -13.20701 -13.02951 -12.82105 -12.43390 -12.32604 -12.03497 -11.94107 -11.66981 -11.62455 -11.32098 -11.11658 -10.94455 -10.88022 -10.77112 -10.67660 -10.58749 -10.18971 -9.62585 -9.19648 -9.12818 -8.88617 -8.74935 -8.44432 -7.68540 -6.05073 -4.09826 0.99481 1.04375 2.44100 3.28554 3.35614 3.38263 3.40982 3.43775 3.92462 4.11923 4.42972 4.53322 4.60967 4.84659 5.02416 5.04303 5.11179 5.21002 5.22797 5.27917 5.31034 5.38715 5.53165 5.65744 5.72764 5.79739 5.83566 5.90925 5.97093 6.00610 6.08180 6.17568 6.19171 6.21344 6.51590 6.66276 6.74703 6.78525 6.90358 7.08868 7.45036 7.55141 7.91537 8.22914 8.41130 8.89780 9.09076 9.55377 11.03032 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.003364 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.909242 B = 8320.730518 C = 9046.623651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.594 5.594 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.537 6.537 16 C -0.134 4.134 17 C -0.037 4.037 18 H 0.088 0.912 19 C -0.149 4.149 20 C -0.039 4.039 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.164 4.164 24 C 0.097 3.903 25 F -0.143 7.143 26 C -0.151 4.151 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.434 -9.361 -17.599 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.293 3.707 15 O -0.415 6.415 16 C -0.174 4.174 17 C -0.056 4.056 18 H 0.107 0.893 19 C -0.206 4.206 20 C -0.039 4.039 21 C -0.143 4.143 22 C -0.107 4.107 23 C -0.183 4.183 24 C 0.078 3.922 25 F -0.122 7.122 26 C -0.170 4.170 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.784 -9.339 -16.888 20.146 hybrid contribution 0.072 0.669 0.024 0.674 sum 5.856 -8.670 -16.864 19.846 Atomic orbital electron populations 1.23813 0.95868 1.01744 1.00653 1.23426 0.96393 0.99058 0.99836 1.20576 0.93139 0.95263 0.89803 1.48237 1.10556 1.60155 1.13516 1.19266 0.95356 0.93750 0.78856 1.21467 1.40374 0.93332 1.01207 0.92419 1.24939 0.95095 0.98715 0.95380 1.69946 1.42134 1.36057 1.05182 0.86462 0.77904 0.85043 0.78125 1.19804 1.21001 1.20891 1.20276 0.82271 0.78552 0.89607 1.90637 1.52273 1.56517 1.42079 1.21801 0.96411 1.01873 0.97289 1.19941 0.93986 0.98380 0.93318 0.89348 1.21973 0.98380 0.96520 1.03738 1.19891 0.95716 0.92566 0.95707 1.21145 1.00750 1.00611 0.91797 1.20998 0.97420 0.93827 0.98501 1.21103 1.04433 0.95695 0.97058 1.17709 1.00392 0.79221 0.94870 1.91491 1.87871 1.35413 1.97383 1.21121 1.02722 0.95784 0.97396 0.88294 0.88820 0.87837 0.89532 0.90782 0.95094 0.93900 0.92794 0.89313 0.89529 0.93178 0.89271 0.93074 0.85185 0.85105 0.85084 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.02 0.42 -1.92 16 2 C -0.17 -2.33 9.74 -36.02 -0.35 -2.68 16 3 C 0.14 2.13 5.65 -5.19 -0.03 2.10 16 4 N -0.59 -12.07 2.44 -176.43 -0.43 -12.50 16 5 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 6 C -0.52 -14.60 9.39 -34.44 -0.32 -14.92 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.51 9.86 7.39 -10.99 -0.08 9.78 16 15 O -0.54 -12.62 13.55 5.55 0.08 -12.54 16 16 C -0.13 -1.84 3.47 -27.88 -0.10 -1.93 16 17 C -0.04 -0.49 2.21 -91.77 -0.20 -0.70 16 18 H 0.09 1.26 7.69 -51.93 -0.40 0.87 16 19 C -0.15 -2.08 8.75 37.16 0.33 -1.75 16 20 C -0.04 -0.43 4.78 -104.63 -0.50 -0.93 16 21 C -0.12 -1.22 8.76 -39.58 -0.35 -1.57 16 22 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 23 C -0.16 -1.53 10.03 -39.51 -0.40 -1.92 16 24 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 25 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 26 C -0.15 -1.70 9.65 -39.51 -0.38 -2.08 16 27 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 28 H 0.09 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.10 1.36 7.83 -52.48 -0.41 0.95 16 30 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 31 H 0.07 0.95 6.44 -51.93 -0.33 0.61 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.09 1.07 6.83 -51.93 -0.35 0.71 16 36 H 0.09 1.06 7.77 -51.93 -0.40 0.65 16 37 H 0.05 0.62 7.39 -51.93 -0.38 0.23 16 38 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 1.13 7.16 -52.48 -0.38 0.75 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.14 1.42 7.95 -52.49 -0.42 1.00 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -31.86 363.99 -8.13 -39.99 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.24 Total: 1.26 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.78 Total: -10.98 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.31 Total: -38.16 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.86 -8.13 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292306233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.521 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds