Wall clock time and date at job start Tue Mar 31 2020 09:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50701 * 120.00309 * 2 1 4 4 N 1.46499 * 109.47313 * 125.00234 * 3 2 1 5 5 C 1.46502 * 119.99642 * 270.00171 * 4 3 2 6 6 C 1.50698 * 109.47172 * 269.99676 * 5 4 3 7 7 H 1.08001 * 120.00022 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00442 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99736 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00385 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46911 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47052 * 120.00082 * 10 8 6 13 13 H 1.48493 * 109.47120 * 240.00394 * 10 8 6 14 14 C 1.34777 * 120.00254 * 90.00006 * 4 3 2 15 15 O 1.21283 * 119.99716 * 180.02562 * 14 4 3 16 16 C 1.50700 * 119.99799 * 359.97438 * 14 4 3 17 17 C 1.53000 * 109.46756 * 180.02562 * 16 14 4 18 18 H 1.08995 * 109.47548 * 55.00024 * 17 16 14 19 19 C 1.53005 * 109.47284 * 294.99909 * 17 16 14 20 20 C 1.50699 * 109.47010 * 175.00547 * 17 16 14 21 21 C 1.38264 * 119.99175 * 60.01817 * 20 17 16 22 22 C 1.38223 * 120.05372 * 179.97438 * 21 20 17 23 23 C 1.38223 * 120.02448 * 0.02779 * 22 21 20 24 24 C 1.38437 * 119.97390 * 359.69495 * 23 22 21 25 25 F 1.35099 * 120.02356 * 180.32333 * 24 23 22 26 26 C 1.38183 * 119.98467 * 240.00244 * 20 17 16 27 27 H 1.08000 * 120.00296 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00212 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00171 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46944 * 5.00023 * 3 2 1 31 31 H 1.09001 * 109.47043 * 245.00064 * 3 2 1 32 32 H 1.08994 * 109.47614 * 29.99688 * 5 4 3 33 33 H 1.09007 * 109.46870 * 150.00110 * 5 4 3 34 34 H 0.96992 * 120.00053 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46822 * 60.00550 * 16 14 4 36 36 H 1.08997 * 109.47233 * 299.99948 * 16 14 4 37 37 H 1.08997 * 109.47176 * 300.00976 * 19 17 16 38 38 H 1.09007 * 109.46603 * 59.99932 * 19 17 16 39 39 H 1.08994 * 109.47161 * 179.97438 * 19 17 16 40 40 H 1.08004 * 119.96758 * 359.97438 * 21 20 17 41 41 H 1.07999 * 119.98701 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.01081 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.01017 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3435 2.4804 7 1 3.3034 3.8370 1.6365 8 6 2.5185 4.0667 3.6082 9 7 1.9590 3.4659 4.6357 10 14 2.8717 5.8997 3.6768 11 1 3.5007 6.3306 2.4025 12 1 1.6010 6.6415 3.8778 13 1 3.7947 6.1841 4.8047 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8878 1.9192 16 6 4.6968 0.3172 -0.3480 17 6 6.1530 -0.1414 -0.2470 18 1 6.2539 -0.8527 0.5727 19 6 7.0520 1.0688 0.0143 20 6 6.5624 -0.8016 -1.5384 21 6 6.5180 -0.0898 -2.7229 22 6 6.8938 -0.6939 -3.9080 23 6 7.3139 -2.0107 -3.9102 24 6 7.3643 -2.7227 -2.7240 25 9 7.7810 -4.0078 -2.7241 26 6 6.9824 -2.1180 -1.5381 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0990 1.3602 3.2259 34 1 1.7301 3.9746 5.4292 35 1 4.6120 1.0936 -1.1084 36 1 4.0677 -0.5298 -0.6216 37 1 6.9510 1.7802 -0.8053 38 1 6.7557 1.5464 0.9484 39 1 8.0892 0.7420 0.0867 40 1 6.1894 0.9390 -2.7221 41 1 6.8590 -0.1368 -4.8325 42 1 7.6078 -2.4824 -4.8363 43 1 7.0177 -2.6736 -0.6126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292306233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:25 Heat of formation + Delta-G solvation = -64.014251 kcal Electronic energy + Delta-G solvation = -24599.730507 eV Core-core repulsion = 20944.800756 eV Total energy + Delta-G solvation = -3654.929751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.87587 -41.10649 -39.99154 -37.31264 -35.90989 -35.04166 -33.63523 -31.73211 -30.88646 -29.90330 -28.32056 -26.80896 -25.20753 -24.14236 -23.67511 -21.50604 -20.99718 -19.70899 -18.64635 -18.34868 -17.68015 -17.34530 -17.08254 -16.97926 -16.57637 -16.38454 -16.13813 -15.59442 -15.35902 -14.80304 -14.54807 -14.44254 -14.24329 -14.09677 -13.88015 -13.63962 -13.30789 -13.08460 -12.99797 -12.89042 -12.71969 -12.60745 -12.56703 -12.23795 -12.19026 -12.02121 -11.76293 -11.69693 -11.60829 -10.63985 -10.45387 -10.29387 -9.88813 -9.58260 -9.40795 -8.20697 -6.35330 0.22420 0.29449 1.34739 1.37414 1.39617 1.51305 1.90099 2.35854 2.51736 2.68815 3.09042 3.25719 3.59301 3.77013 3.93550 4.02650 4.11302 4.14195 4.23179 4.27397 4.32735 4.41386 4.49314 4.54284 4.69986 4.79625 4.88018 4.93198 5.02086 5.05693 5.08766 5.16509 5.20284 5.22251 5.26621 5.39031 5.50441 5.57052 5.64934 5.73155 5.78868 5.98501 5.99457 6.08880 6.72876 6.83903 7.31042 7.54593 8.86568 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.003364 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.909242 B = 8320.730518 C = 9046.623651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.601 5.601 5 C 0.265 3.735 6 C -0.538 4.538 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.271 1.271 13 H -0.284 1.284 14 C 0.497 3.503 15 O -0.588 6.588 16 C -0.117 4.117 17 C -0.031 4.031 18 H 0.066 0.934 19 C -0.145 4.145 20 C -0.046 4.046 21 C -0.124 4.124 22 C -0.081 4.081 23 C -0.159 4.159 24 C 0.078 3.922 25 F -0.152 7.152 26 C -0.163 4.163 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.017 0.983 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.153 0.847 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -8.649 -21.101 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.331 5.331 5 C 0.143 3.857 6 C -0.577 4.577 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.196 1.196 13 H -0.210 1.210 14 C 0.286 3.714 15 O -0.469 6.469 16 C -0.157 4.157 17 C -0.050 4.050 18 H 0.085 0.915 19 C -0.202 4.202 20 C -0.046 4.046 21 C -0.141 4.141 22 C -0.099 4.099 23 C -0.177 4.177 24 C 0.059 3.941 25 F -0.131 7.131 26 C -0.182 4.182 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.035 0.965 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.182 0.818 42 H 0.170 0.830 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.728 -8.644 -20.438 22.918 hybrid contribution 0.068 0.393 1.103 1.173 sum 5.796 -8.251 -19.335 21.806 Atomic orbital electron populations 1.24034 0.95646 1.02762 0.98611 1.23354 0.96765 0.98449 1.01617 1.20822 0.92747 0.96030 0.89291 1.48230 1.11942 1.60009 1.12900 1.18653 0.93601 0.92743 0.80695 1.21749 1.40205 0.94377 1.01326 0.92555 1.25871 0.94754 1.03719 0.94935 1.70070 1.43070 1.38036 1.05835 0.85377 0.78123 0.79120 0.78253 1.18785 1.19607 1.20960 1.21324 0.81271 0.77508 0.91266 1.90620 1.53562 1.58323 1.44372 1.21777 0.96914 1.03122 0.93872 1.19778 0.93521 0.97638 0.94071 0.91546 1.21891 0.98917 0.97112 1.02292 1.19614 0.97248 0.92568 0.95174 1.21375 1.00112 1.01227 0.91435 1.21357 0.95754 0.93464 0.99310 1.21431 1.03213 0.96006 0.97099 1.17919 1.01419 0.79183 0.95551 1.91466 1.88112 1.36069 1.97451 1.21147 1.03345 0.96102 0.97634 0.88356 0.86765 0.86880 0.90681 0.87192 0.96526 0.98725 0.92530 0.86449 0.87233 0.91148 0.93417 0.92394 0.83541 0.81790 0.82976 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 14.32 67.79 0.97 -3.12 16 2 C -0.18 -4.77 9.74 25.66 0.25 -4.52 16 3 C 0.13 4.01 5.65 85.63 0.48 4.49 16 4 N -0.60 -24.82 2.44 -830.49 -2.03 -26.84 16 5 C 0.26 14.25 5.16 85.63 0.44 14.69 16 6 C -0.54 -30.72 9.39 25.60 0.24 -30.48 16 7 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 10 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.50 19.70 7.39 87.66 0.65 20.35 16 15 O -0.59 -29.20 13.55 -3.04 -0.04 -29.24 16 16 C -0.12 -3.04 3.47 29.85 0.10 -2.94 16 17 C -0.03 -0.80 2.21 -11.54 -0.03 -0.83 16 18 H 0.07 1.98 7.69 -2.39 -0.02 1.97 16 19 C -0.14 -4.01 8.75 71.98 0.63 -3.38 16 20 C -0.05 -0.94 4.78 -19.87 -0.09 -1.04 16 21 C -0.12 -1.95 8.76 22.27 0.20 -1.76 16 22 C -0.08 -1.04 10.04 22.26 0.22 -0.81 16 23 C -0.16 -2.43 10.03 22.31 0.22 -2.21 16 24 C 0.08 1.60 7.30 22.38 0.16 1.77 16 25 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 26 C -0.16 -3.54 9.65 22.31 0.22 -3.32 16 27 H 0.10 2.33 7.84 -2.91 -0.02 2.31 16 28 H 0.11 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.11 2.74 7.83 -2.91 -0.02 2.72 16 30 H 0.07 2.42 7.72 -2.39 -0.02 2.40 16 31 H 0.11 2.47 6.44 -2.39 -0.02 2.45 16 32 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 33 H -0.01 -0.34 7.42 -2.38 -0.02 -0.35 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.12 2.40 6.83 -2.39 -0.02 2.38 16 36 H 0.11 2.39 7.77 -2.39 -0.02 2.37 16 37 H 0.07 1.61 7.39 -2.39 -0.02 1.59 16 38 H 0.05 1.74 5.95 -2.38 -0.01 1.72 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.15 1.83 7.16 -2.91 -0.02 1.81 16 41 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.13 2.81 7.95 -2.91 -0.02 2.78 16 Total: -1.00 -73.40 363.99 7.14 -66.26 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.99 Total: 14.34 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 5.13 Total: -12.31 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.74 Total: -83.07 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.04 Total: -29.24 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -73.40 7.14 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292306233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.244 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds