Wall clock time and date at job start Tue Mar 31 2020 09:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.50701 * 110.01507 * 59.30024 * 15 13 12 17 17 C 1.38223 * 120.01098 * 0.70386 * 16 15 13 18 18 C 1.38225 * 120.02388 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05236 * 0.02562 * 18 17 16 20 20 C 1.38177 * 120.02483 * 359.97438 * 19 18 17 21 21 C 1.38437 * 120.01387 * 180.42510 * 16 15 13 22 22 F 1.35102 * 120.02704 * 359.97438 * 21 16 15 23 23 C 1.53875 * 110.03275 * 297.91175 * 15 13 12 24 24 C 1.54370 * 106.54377 * 240.72657 * 23 15 13 25 25 C 1.54887 * 104.21894 * 23.57249 * 24 23 15 26 26 C 1.54266 * 110.03512 * 180.68901 * 15 13 12 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 32 32 H 1.07997 * 119.99177 * 359.95048 * 17 16 15 33 33 H 1.08006 * 119.97665 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.98681 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.01256 * 179.97438 * 20 19 18 36 36 H 1.08997 * 110.03313 * 359.97438 * 23 15 13 37 37 H 1.09005 * 110.03213 * 121.42738 * 23 15 13 38 38 H 1.09006 * 110.46190 * 264.89542 * 24 23 15 39 39 H 1.09004 * 110.60495 * 142.32411 * 24 23 15 40 40 H 1.08996 * 110.75806 * 203.75949 * 25 24 23 41 41 H 1.09005 * 110.75167 * 80.38714 * 25 24 23 42 42 H 1.08996 * 110.48748 * 214.35681 * 26 15 13 43 43 H 1.09000 * 110.48812 * 336.86953 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 1.7362 -1.8786 -3.9277 17 6 0.6213 -2.1296 -3.1502 18 6 -0.2163 -3.1840 -3.4620 19 6 0.0603 -3.9893 -4.5514 20 6 1.1743 -3.7404 -5.3301 21 6 2.0110 -2.6807 -5.0221 22 9 3.0971 -2.4326 -5.7864 23 6 4.0799 -1.2430 -3.3528 24 6 4.9738 -0.5515 -4.4043 25 6 4.1955 0.7342 -4.7790 26 6 2.7223 0.2558 -4.7733 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 2.2491 -1.6316 -1.1527 32 1 0.4046 -1.5018 -2.2985 33 1 -1.0871 -3.3796 -2.8537 34 1 -0.5946 -4.8131 -4.7938 35 1 1.3904 -4.3697 -6.1808 36 1 4.4116 -0.9784 -2.3488 37 1 4.1144 -2.3244 -3.4854 38 1 5.0980 -1.1907 -5.2785 39 1 5.9441 -0.2991 -3.9766 40 1 4.4838 1.0854 -5.7697 41 1 4.3520 1.5120 -4.0315 42 1 2.4828 -0.2529 -5.7070 43 1 2.0468 1.0963 -4.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299696223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:16 Heat of formation + Delta-G solvation = -68.346151 kcal Electronic energy + Delta-G solvation = -26249.900287 eV Core-core repulsion = 22594.782691 eV Total energy + Delta-G solvation = -3655.117596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.89592 -40.49797 -38.34275 -36.86872 -34.80265 -32.70558 -31.76125 -30.46751 -29.17000 -28.41682 -27.51811 -25.30116 -23.27942 -22.57220 -21.78914 -20.49479 -20.17286 -19.00650 -17.67783 -17.19106 -16.25287 -16.09361 -15.64567 -15.47360 -15.26346 -14.80531 -14.57265 -14.26643 -14.14249 -13.48067 -13.17144 -13.05387 -12.80608 -12.52974 -12.43707 -12.24716 -11.74821 -11.41215 -11.28976 -11.21105 -11.07522 -11.01172 -11.00067 -10.84852 -10.76803 -10.58606 -10.36548 -10.30828 -10.25141 -9.09259 -8.95961 -8.92954 -8.60657 -8.56969 -7.90957 -6.14350 -4.23588 1.14041 1.21275 3.23175 3.28825 3.30391 3.32336 3.57900 3.97660 4.27755 4.35440 4.50751 4.70043 4.79784 4.81470 5.00557 5.18101 5.19700 5.27083 5.36926 5.52393 5.60374 5.63399 5.75183 5.82518 5.85257 6.00177 6.05248 6.08567 6.10281 6.20188 6.30729 6.37020 6.44794 6.48279 6.53983 6.77487 6.88841 6.91097 7.10810 7.41961 7.52412 7.66825 7.88435 8.12124 8.62506 8.75680 9.07950 9.44146 10.91519 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.004858 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.647983 B = 5762.600228 C = 6509.744395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.518 3.482 14 O -0.544 6.544 15 C -0.043 4.043 16 C -0.099 4.099 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.158 4.158 21 C 0.104 3.896 22 F -0.134 7.134 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.104 4.104 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.390 0.610 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -8.701 -15.069 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.357 5.357 13 C 0.302 3.698 14 O -0.422 6.422 15 C -0.046 4.046 16 C -0.100 4.100 17 C -0.114 4.114 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.177 4.177 21 C 0.085 3.915 22 F -0.113 7.113 23 C -0.148 4.148 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.141 4.141 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.223 0.777 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.466 -7.711 -14.940 16.876 hybrid contribution 0.526 -1.001 0.830 1.403 sum 1.992 -8.712 -14.110 16.702 Atomic orbital electron populations 1.22111 0.98471 0.99090 1.01040 1.18758 0.90974 0.94038 0.80016 0.93348 1.21204 1.32446 1.13219 0.90290 0.92106 1.24873 0.94772 0.94939 0.99019 1.69895 1.35833 1.22434 1.23884 0.86466 0.78629 0.79875 0.82244 1.20567 1.21075 1.19850 1.46698 1.64863 1.13608 1.10484 1.19971 0.78129 0.87239 0.84437 1.90639 1.50786 1.15878 1.84923 1.20434 0.94987 0.93330 0.95877 1.19732 0.97674 0.96926 0.95687 1.21720 0.92667 0.97565 0.99487 1.21259 1.00047 0.95345 0.97491 1.21007 0.96367 0.99414 0.94780 1.21072 0.96272 0.98161 1.02214 1.17427 0.85906 0.96781 0.91383 1.91469 1.52020 1.93731 1.74070 1.22272 0.91673 1.00250 1.00560 1.22371 0.98104 0.96807 0.98527 1.22451 0.94504 0.97533 1.01291 1.22377 0.98138 0.98348 0.95285 0.89023 0.95398 0.96625 0.92573 0.77743 0.83152 0.85205 0.85276 0.85008 0.90534 0.91198 0.91290 0.91650 0.91589 0.91019 0.91330 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.79 37.16 0.33 -3.24 16 2 C 0.26 6.54 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.71 -14.48 3.24 -54.93 -0.18 -14.65 16 13 C 0.52 10.31 5.14 -10.99 -0.06 10.25 16 14 O -0.54 -12.83 15.05 5.55 0.08 -12.75 16 15 C -0.04 -0.68 0.53 -155.70 -0.08 -0.76 16 16 C -0.10 -1.45 4.61 -104.55 -0.48 -1.93 16 17 C -0.10 -1.43 8.46 -39.59 -0.33 -1.76 16 18 C -0.12 -1.50 10.04 -39.57 -0.40 -1.90 16 19 C -0.10 -1.02 10.04 -39.59 -0.40 -1.41 16 20 C -0.16 -1.74 10.03 -39.51 -0.40 -2.14 16 21 C 0.10 1.36 6.21 -39.42 -0.24 1.12 16 22 F -0.13 -1.75 13.27 2.25 0.03 -1.72 16 23 C -0.11 -1.57 5.32 -25.56 -0.14 -1.70 16 24 C -0.12 -1.52 6.46 -25.02 -0.16 -1.68 16 25 C -0.12 -1.63 6.91 -24.74 -0.17 -1.80 16 26 C -0.10 -1.57 5.33 -25.07 -0.13 -1.70 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 7.21 7.86 -40.82 -0.32 6.89 16 32 H 0.15 2.57 4.95 -52.49 -0.26 2.31 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.08 1.18 7.61 -51.93 -0.39 0.78 16 37 H 0.07 0.93 7.05 -51.93 -0.37 0.56 16 38 H 0.07 0.81 7.23 -51.93 -0.38 0.43 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.96 6.33 -51.93 -0.33 0.63 16 43 H 0.09 1.48 6.83 -51.93 -0.35 1.13 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -29.08 340.64 -8.60 -37.68 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.03 Total: 9.56 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.24 Total: -14.78 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.45 Total: -38.55 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.08 -8.60 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299696223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.668 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds