Wall clock time and date at job start Tue Mar 31 2020 09:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.50701 * 110.01507 * 59.30024 * 15 13 12 17 17 C 1.38223 * 120.01098 * 0.70386 * 16 15 13 18 18 C 1.38225 * 120.02388 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05236 * 0.02562 * 18 17 16 20 20 C 1.38177 * 120.02483 * 359.97438 * 19 18 17 21 21 C 1.38437 * 120.01387 * 180.42510 * 16 15 13 22 22 F 1.35102 * 120.02704 * 359.97438 * 21 16 15 23 23 C 1.53875 * 110.03275 * 297.91175 * 15 13 12 24 24 C 1.54370 * 106.54377 * 240.72657 * 23 15 13 25 25 C 1.54887 * 104.21894 * 23.57249 * 24 23 15 26 26 C 1.54266 * 110.03512 * 180.68901 * 15 13 12 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 32 32 H 1.07997 * 119.99177 * 359.95048 * 17 16 15 33 33 H 1.08006 * 119.97665 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.98681 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.01256 * 179.97438 * 20 19 18 36 36 H 1.08997 * 110.03313 * 359.97438 * 23 15 13 37 37 H 1.09005 * 110.03213 * 121.42738 * 23 15 13 38 38 H 1.09006 * 110.46190 * 264.89542 * 24 23 15 39 39 H 1.09004 * 110.60495 * 142.32411 * 24 23 15 40 40 H 1.08996 * 110.75806 * 203.75949 * 25 24 23 41 41 H 1.09005 * 110.75167 * 80.38714 * 25 24 23 42 42 H 1.08996 * 110.48748 * 214.35681 * 26 15 13 43 43 H 1.09000 * 110.48812 * 336.86953 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 1.7362 -1.8786 -3.9277 17 6 0.6213 -2.1296 -3.1502 18 6 -0.2163 -3.1840 -3.4620 19 6 0.0603 -3.9893 -4.5514 20 6 1.1743 -3.7404 -5.3301 21 6 2.0110 -2.6807 -5.0221 22 9 3.0971 -2.4326 -5.7864 23 6 4.0799 -1.2430 -3.3528 24 6 4.9738 -0.5515 -4.4043 25 6 4.1955 0.7342 -4.7790 26 6 2.7223 0.2558 -4.7733 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 2.2491 -1.6316 -1.1527 32 1 0.4046 -1.5018 -2.2985 33 1 -1.0871 -3.3796 -2.8537 34 1 -0.5946 -4.8131 -4.7938 35 1 1.3904 -4.3697 -6.1808 36 1 4.4116 -0.9784 -2.3488 37 1 4.1144 -2.3244 -3.4854 38 1 5.0980 -1.1907 -5.2785 39 1 5.9441 -0.2991 -3.9766 40 1 4.4838 1.0854 -5.7697 41 1 4.3520 1.5120 -4.0315 42 1 2.4828 -0.2529 -5.7070 43 1 2.0468 1.0963 -4.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299696223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:15 Heat of formation + Delta-G solvation = -83.425834 kcal Electronic energy + Delta-G solvation = -26250.554192 eV Core-core repulsion = 22594.782691 eV Total energy + Delta-G solvation = -3655.771500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.86844 -41.86423 -39.53363 -38.20793 -36.67845 -34.48804 -33.02913 -31.42731 -30.90096 -29.63494 -28.73828 -27.36829 -24.61418 -23.56595 -23.11399 -21.92257 -21.60771 -20.53832 -18.98091 -18.40554 -17.84626 -17.29984 -17.04787 -16.79992 -16.58806 -16.15390 -15.87551 -15.65110 -15.39828 -14.85016 -14.56870 -14.44659 -14.20406 -13.99115 -13.70692 -13.52004 -13.22392 -12.99265 -12.91268 -12.79326 -12.54206 -12.35283 -12.33829 -12.21336 -12.16182 -12.08395 -11.96973 -11.70305 -11.47194 -11.12762 -10.68185 -10.56071 -9.92876 -9.72341 -9.57554 -8.18786 -6.36337 0.18027 0.25399 1.43789 1.44120 1.54861 1.70677 2.30909 2.52940 2.62387 3.11578 3.29970 3.36290 3.49998 3.61725 3.88450 3.98871 4.12473 4.24638 4.38906 4.41910 4.42958 4.45675 4.62061 4.72918 4.73321 4.85762 4.87754 4.90075 4.99587 5.06071 5.08310 5.13253 5.15305 5.19266 5.27724 5.39266 5.41142 5.43623 5.52168 5.58329 5.66006 5.87837 5.96030 6.08210 6.70305 6.88806 7.29492 7.47474 8.87360 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.004858 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.647983 B = 5762.600228 C = 6509.744395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.260 1.260 12 N -0.700 5.700 13 C 0.517 3.483 14 O -0.589 6.589 15 C -0.035 4.035 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.084 4.084 20 C -0.148 4.148 21 C 0.098 3.902 22 F -0.134 7.134 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.103 4.103 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.011 0.989 30 H 0.266 0.734 31 H 0.401 0.599 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -12.078 -16.622 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.184 1.184 12 N -0.348 5.348 13 C 0.304 3.696 14 O -0.470 6.470 15 C -0.038 4.038 16 C -0.116 4.116 17 C -0.140 4.140 18 C -0.143 4.143 19 C -0.102 4.102 20 C -0.166 4.166 21 C 0.079 3.921 22 F -0.112 7.112 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.141 4.141 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.236 0.764 32 H 0.137 0.863 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.181 0.819 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.081 -11.121 -16.513 20.017 hybrid contribution 0.278 0.067 1.261 1.293 sum 2.359 -11.054 -15.252 18.984 Atomic orbital electron populations 1.21892 0.98024 0.99581 0.99555 1.18356 0.91264 0.91750 0.81757 0.98563 1.21497 1.32616 1.13501 0.90790 0.91164 1.25761 0.94805 0.95550 1.02190 1.70046 1.36898 1.23863 1.24613 0.85371 0.77791 0.79203 0.78140 1.20460 1.20816 1.18428 1.46409 1.64834 1.13898 1.09651 1.20734 0.76795 0.86759 0.85312 1.90611 1.52648 1.18071 1.85717 1.20352 0.96173 0.93820 0.93463 1.19602 0.97767 0.97149 0.97088 1.21534 0.94122 0.98859 0.99462 1.21474 0.99875 0.94613 0.98360 1.21417 0.96266 0.99368 0.93141 1.21466 0.95342 0.97170 1.02671 1.17492 0.86460 0.97242 0.90923 1.91464 1.52073 1.93820 1.73885 1.22298 0.90835 1.01267 1.00283 1.22365 0.97943 0.96094 0.98602 1.22456 0.93640 0.97570 1.02049 1.22375 0.98688 0.97422 0.95616 0.91416 0.93748 0.97031 0.92522 0.76397 0.86262 0.83857 0.81474 0.81882 0.92313 0.89709 0.89445 0.90474 0.89076 0.93328 0.89689 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 8.79 71.98 0.63 -6.02 16 2 C 0.27 14.22 2.56 44.24 0.11 14.33 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.55 -29.00 8.73 25.60 0.22 -28.78 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -52.49 11.32 21.45 0.24 -52.25 16 8 Si 0.97 42.00 29.54 68.60 2.03 44.02 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 12 N -0.70 -29.98 3.24 -446.09 -1.45 -31.43 16 13 C 0.52 21.76 5.14 87.66 0.45 22.21 16 14 O -0.59 -29.94 15.05 -3.05 -0.05 -29.99 16 15 C -0.03 -1.12 0.53 -52.95 -0.03 -1.15 16 16 C -0.11 -3.27 4.61 -19.82 -0.09 -3.37 16 17 C -0.12 -3.57 8.46 22.26 0.19 -3.38 16 18 C -0.13 -2.78 10.04 22.27 0.22 -2.56 16 19 C -0.08 -1.40 10.04 22.26 0.22 -1.18 16 20 C -0.15 -2.63 10.03 22.31 0.22 -2.41 16 21 C 0.10 2.30 6.21 22.38 0.14 2.44 16 22 F -0.13 -3.06 13.27 44.97 0.60 -2.46 16 23 C -0.11 -3.04 5.32 31.35 0.17 -2.88 16 24 C -0.11 -2.65 6.46 31.70 0.20 -2.45 16 25 C -0.12 -3.19 6.91 31.89 0.22 -2.97 16 26 C -0.10 -3.15 5.33 31.67 0.17 -2.98 16 27 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 28 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.40 15.29 7.86 -92.71 -0.73 14.56 16 32 H 0.12 4.24 4.95 -2.91 -0.01 4.22 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.06 1.83 7.61 -2.39 -0.02 1.81 16 37 H 0.08 2.11 7.05 -2.38 -0.02 2.09 16 38 H 0.09 1.77 7.23 -2.38 -0.02 1.75 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.08 2.29 6.33 -2.39 -0.02 2.27 16 43 H 0.06 2.13 6.83 -2.39 -0.02 2.11 16 Total: -1.00 -66.45 340.64 5.18 -61.27 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.30 Total: 30.58 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.51 Total: -19.75 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.20 Total: -83.68 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.60 Total: -2.46 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -66.45 5.18 -61.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299696223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.155 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds