Wall clock time and date at job start Tue Mar 31 2020 09:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46961 * 2 1 4 4 C 1.50696 * 109.46932 * 119.99288 * 2 1 3 5 5 O 1.21286 * 119.99969 * 105.94056 * 4 2 1 6 6 N 1.34777 * 120.00532 * 285.94516 * 4 2 1 7 7 C 1.46926 * 120.63240 * 185.28764 * 6 4 2 8 8 C 1.53619 * 108.54338 * 126.36742 * 7 6 4 9 9 C 1.53045 * 109.24655 * 54.85443 * 8 7 6 10 10 C 1.50697 * 109.45108 * 178.49901 * 9 8 7 11 11 H 1.08000 * 120.00210 * 120.06223 * 10 9 8 12 12 C 1.37875 * 119.99805 * 300.05901 * 10 9 8 13 13 N 1.31518 * 119.99885 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00364 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47494 * 89.99441 * 14 12 10 16 16 H 1.48502 * 109.47256 * 210.00037 * 14 12 10 17 17 H 1.48505 * 109.46648 * 329.99519 * 14 12 10 18 18 C 1.53040 * 109.53293 * 298.51297 * 9 8 7 19 19 C 1.46927 * 120.62835 * 5.56154 * 6 4 2 20 20 C 1.50692 * 109.47370 * 239.99529 * 2 1 3 21 21 C 1.38220 * 120.01414 * 299.98327 * 20 2 1 22 22 C 1.38224 * 120.02652 * 180.02562 * 21 20 2 23 23 C 1.38267 * 120.05051 * 359.97438 * 22 21 20 24 24 C 1.38178 * 120.02536 * 0.02562 * 23 22 21 25 25 C 1.38439 * 120.01177 * 119.99771 * 20 2 1 26 26 F 1.35099 * 120.02514 * 359.95675 * 25 20 2 27 27 H 1.09004 * 109.47208 * 186.75952 * 1 2 3 28 28 H 1.09000 * 109.47549 * 306.75868 * 1 2 3 29 29 H 1.08995 * 109.47324 * 66.76221 * 1 2 3 30 30 H 1.09003 * 109.58674 * 246.19767 * 7 6 4 31 31 H 1.08998 * 109.58892 * 6.62468 * 7 6 4 32 32 H 1.09004 * 109.63785 * 294.86395 * 8 7 6 33 33 H 1.09001 * 109.43251 * 174.72209 * 8 7 6 34 34 H 1.09006 * 109.45557 * 58.53001 * 9 8 7 35 35 H 0.96999 * 119.99889 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.49818 * 301.40842 * 18 9 8 37 37 H 1.09000 * 109.51822 * 181.32697 * 18 9 8 38 38 H 1.09001 * 109.58429 * 353.37917 * 19 6 4 39 39 H 1.09004 * 109.58379 * 113.65941 * 19 6 4 40 40 H 1.07998 * 119.98770 * 0.02562 * 21 20 2 41 41 H 1.07997 * 119.97237 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.98449 * 180.27363 * 23 22 21 43 43 H 1.08005 * 120.01180 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 2.5064 -1.8227 1.1376 6 7 1.9546 -0.1094 2.4344 7 6 2.5435 -0.7384 3.6245 8 6 3.4899 0.2704 4.2926 9 6 2.7261 1.5652 4.5795 10 6 3.6405 2.5451 5.2684 11 1 3.8472 3.5026 4.8135 12 6 4.2132 2.2193 6.4795 13 7 5.0108 3.0747 7.0811 14 14 3.8563 0.5630 7.2662 15 1 4.8599 -0.4301 6.8062 16 1 3.9279 0.6911 8.7439 17 1 2.4971 0.1114 6.8738 18 6 2.2301 2.1690 3.2636 19 6 1.2742 1.1844 2.5828 20 6 2.0324 -0.7105 -1.2303 21 6 1.6989 -2.0339 -1.4491 22 6 2.1600 -2.6860 -2.5772 23 6 2.9548 -2.0152 -3.4884 24 6 3.2894 -0.6922 -3.2718 25 6 2.8283 -0.0379 -2.1418 26 9 3.1543 1.2558 -1.9293 27 1 -0.3634 -1.0205 0.1210 28 1 -0.3634 0.6150 0.8233 29 1 -0.3634 0.4054 -0.9442 30 1 1.7519 -1.0170 4.3201 31 1 3.1027 -1.6263 3.3296 32 1 4.3279 0.4820 3.6283 33 1 3.8629 -0.1468 5.2280 34 1 1.8739 1.3488 5.2238 35 1 5.4140 2.8453 7.9329 36 1 3.0799 2.3626 2.6090 37 1 1.7065 3.1033 3.4661 38 1 0.9957 1.5655 1.6003 39 1 0.3798 1.0589 3.1931 40 1 1.0779 -2.5587 -0.7382 41 1 1.8993 -3.7201 -2.7471 42 1 3.3108 -2.5245 -4.3718 43 1 3.9098 -0.1683 -3.9840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334178593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:29 Heat of formation + Delta-G solvation = -58.084343 kcal Electronic energy + Delta-G solvation = -25551.587992 eV Core-core repulsion = 21896.915381 eV Total energy + Delta-G solvation = -3654.672611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.98869 -40.43733 -38.89190 -37.07397 -34.52984 -33.49074 -31.49388 -30.72802 -30.59179 -29.42772 -26.67700 -24.89887 -23.12858 -23.00881 -22.65303 -21.46976 -19.85199 -18.55293 -17.78950 -17.18316 -16.77093 -16.21115 -16.15815 -15.64009 -15.34058 -14.98332 -14.60052 -14.28596 -13.95278 -13.81983 -13.54466 -13.24065 -13.09239 -13.07574 -12.59223 -12.49068 -12.34926 -12.15652 -12.07585 -11.98749 -11.81878 -11.31097 -11.07812 -10.99162 -10.76551 -10.20505 -10.05702 -9.76387 -9.67764 -9.29041 -9.10490 -9.05789 -8.75200 -8.57297 -8.21961 -6.10960 -4.10533 1.00635 1.11746 2.77432 3.16729 3.24419 3.33332 3.36808 3.53719 4.13727 4.31491 4.36769 4.49871 4.69428 4.82805 4.98866 4.99201 5.14265 5.19358 5.23495 5.24392 5.45097 5.54665 5.59315 5.68298 5.73068 5.76197 5.81540 5.89550 5.92722 5.98147 6.03817 6.18312 6.23738 6.24324 6.30035 6.54570 6.63539 6.74653 6.78248 6.86810 7.14109 7.44860 7.67180 7.72255 8.34648 8.47544 8.92822 9.51188 11.02314 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.003709 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.542700 B = 7547.417870 C = 7779.947148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 H 0.108 0.892 4 C 0.521 3.479 5 O -0.545 6.545 6 N -0.599 5.599 7 C 0.108 3.892 8 C -0.134 4.134 9 C 0.015 3.985 10 C -0.514 4.514 11 H 0.074 0.926 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.885 3.115 15 H -0.278 1.278 16 H -0.297 1.297 17 H -0.265 1.265 18 C -0.115 4.115 19 C 0.098 3.902 20 C -0.101 4.101 21 C -0.051 4.051 22 C -0.135 4.135 23 C -0.093 4.093 24 C -0.160 4.160 25 C 0.104 3.896 26 F -0.137 7.137 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 -8.795 -19.186 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 H 0.126 0.874 4 C 0.308 3.692 5 O -0.423 6.423 6 N -0.331 5.331 7 C -0.014 4.014 8 C -0.172 4.172 9 C -0.004 4.004 10 C -0.552 4.552 11 H 0.092 0.908 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.225 1.225 17 H -0.190 1.190 18 C -0.154 4.154 19 C -0.024 4.024 20 C -0.102 4.102 21 C -0.069 4.069 22 C -0.153 4.153 23 C -0.111 4.111 24 C -0.178 4.178 25 C 0.085 3.915 26 F -0.116 7.116 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.546 -9.283 -19.041 23.235 hybrid contribution 0.211 -0.503 0.700 0.887 sum -9.335 -9.786 -18.341 22.789 Atomic orbital electron populations 1.21866 0.91514 1.03190 1.03285 1.20203 0.98129 1.00768 0.90587 0.87437 1.20246 0.78756 0.86096 0.84121 1.90661 1.46368 1.19425 1.85833 1.48089 1.55575 1.21713 1.07699 1.21861 0.97006 0.96883 0.85629 1.22452 0.98520 0.96954 0.99283 1.19126 0.95824 0.92553 0.92874 1.21030 1.27234 1.02486 1.04460 0.90822 1.25037 0.94544 0.96795 0.96877 1.69898 1.31306 1.35622 1.17012 0.86876 0.79383 0.84610 0.77549 1.20513 1.22455 1.18999 1.21848 0.98093 0.97235 0.98184 1.22085 0.95880 0.83349 1.01117 1.19416 0.99942 0.95397 0.95440 1.20883 0.97682 0.92477 0.95905 1.21189 0.99090 1.00341 0.94726 1.20989 0.97240 0.93501 0.99357 1.21067 1.03212 0.96053 0.97515 1.17555 0.98695 0.79127 0.96136 1.91494 1.91003 1.34275 1.94805 0.91769 0.90855 0.91206 0.92070 0.89980 0.91716 0.92464 0.95380 0.92634 0.92142 0.91160 0.90313 0.91422 0.85029 0.85457 0.85236 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.57 37.16 0.32 -1.05 16 2 C -0.08 -0.97 2.02 -92.93 -0.19 -1.16 16 3 H 0.11 1.37 6.17 -51.93 -0.32 1.05 16 4 C 0.52 8.39 6.88 -10.99 -0.08 8.31 16 5 O -0.54 -10.20 14.12 5.55 0.08 -10.12 16 6 N -0.60 -9.84 2.97 -172.51 -0.51 -10.36 16 7 C 0.11 1.97 6.44 -3.49 -0.02 1.95 16 8 C -0.13 -2.85 4.86 -26.39 -0.13 -2.98 16 9 C 0.02 0.34 1.65 -91.73 -0.15 0.18 16 10 C -0.51 -14.01 9.14 -34.44 -0.31 -14.32 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 13 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 14 Si 0.89 21.55 24.38 -169.99 -4.14 17.41 16 15 H -0.28 -6.65 6.86 56.52 0.39 -6.27 16 16 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 18 C -0.12 -2.09 5.30 -26.61 -0.14 -2.23 16 19 C 0.10 1.42 5.44 -3.71 -0.02 1.40 16 20 C -0.10 -1.30 4.54 -104.56 -0.47 -1.78 16 21 C -0.05 -0.61 7.90 -39.59 -0.31 -0.92 16 22 C -0.14 -1.34 10.04 -39.58 -0.40 -1.73 16 23 C -0.09 -0.86 10.04 -39.59 -0.40 -1.25 16 24 C -0.16 -1.69 10.03 -39.51 -0.40 -2.08 16 25 C 0.10 1.33 7.25 -39.42 -0.29 1.05 16 26 F -0.14 -1.88 16.19 2.25 0.04 -1.84 16 27 H 0.06 0.61 7.63 -51.93 -0.40 0.22 16 28 H 0.07 0.65 6.05 -51.93 -0.31 0.34 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.52 7.04 -51.93 -0.37 1.15 16 32 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.29 3.24 -51.93 -0.17 1.12 16 34 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.08 0.92 4.57 -51.93 -0.24 0.69 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.13 1.54 7.26 -52.49 -0.38 1.16 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -31.88 336.18 -7.75 -39.63 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.96 Total: 1.51 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -3.09 Total: -14.76 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.26 Total: -36.89 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.88 -7.75 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334178593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.451 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds