Wall clock time and date at job start Tue Mar 31 2020 09:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.76707 * 2 1 4 4 C 1.52782 * 109.81362 * 239.24393 * 2 1 3 5 5 C 1.50602 * 110.86218 * 192.90740 * 4 2 1 6 6 C 1.38948 * 117.59705 * 199.52063 * 5 4 2 7 7 C 1.38129 * 120.56420 * 181.16657 * 6 5 4 8 8 F 1.35100 * 120.11410 * 179.97438 * 7 6 5 9 9 C 1.38487 * 119.77467 * 359.96851 * 7 6 5 10 10 C 1.37918 * 119.68718 * 359.77542 * 9 7 6 11 11 C 1.37693 * 122.85798 * 20.23413 * 5 4 2 12 12 C 1.50812 * 122.33437 * 358.37259 * 11 5 4 13 13 H 1.09000 * 109.44000 * 251.64299 * 12 11 5 14 14 C 1.53009 * 109.43444 * 131.76810 * 12 11 5 15 15 N 1.46678 * 109.67598 * 11.71055 * 12 11 5 16 16 C 1.34772 * 121.34151 * 135.55442 * 15 12 11 17 17 O 1.21283 * 120.00283 * 189.90113 * 16 15 12 18 18 C 1.50702 * 119.99833 * 9.90445 * 16 15 12 19 19 C 1.52999 * 109.47436 * 170.79521 * 18 16 15 20 20 C 1.50702 * 109.47436 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99858 * 359.97438 * 20 19 18 22 22 C 1.37869 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99915 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00204 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47398 * 89.99780 * 24 22 20 26 26 H 1.48502 * 109.46984 * 209.99845 * 24 22 20 27 27 H 1.48505 * 109.46712 * 329.99478 * 24 22 20 28 28 H 1.08997 * 109.46539 * 299.25072 * 1 2 3 29 29 H 1.08997 * 109.47453 * 59.25960 * 1 2 3 30 30 H 1.09002 * 109.47018 * 179.25717 * 1 2 3 31 31 H 1.09001 * 109.19989 * 72.54890 * 4 2 1 32 32 H 1.09002 * 109.19917 * 313.25695 * 4 2 1 33 33 H 1.08002 * 119.71509 * 1.15035 * 6 5 4 34 34 H 1.07992 * 120.15814 * 179.49160 * 9 7 6 35 35 H 1.08000 * 119.73053 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.46869 * 46.49460 * 14 12 11 37 37 H 1.09003 * 109.46341 * 166.48940 * 14 12 11 38 38 H 1.08995 * 109.47070 * 286.48567 * 14 12 11 39 39 H 1.09007 * 109.46801 * 290.79057 * 18 16 15 40 40 H 1.08995 * 109.47505 * 50.78835 * 18 16 15 41 41 H 1.09007 * 109.46747 * 299.99569 * 19 18 16 42 42 H 1.08995 * 109.47333 * 59.99209 * 19 18 16 43 43 H 0.96996 * 119.99837 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8987 1.0258 0.0000 4 6 2.0479 -0.7351 -1.2352 5 6 3.5202 -1.0254 -1.1085 6 6 4.2245 -1.3012 -2.2741 7 6 5.5724 -1.5996 -2.2263 8 9 6.2482 -1.8668 -3.3652 9 6 6.2286 -1.6237 -1.0070 10 6 5.5312 -1.3449 0.1497 11 6 4.1772 -1.0411 0.1015 12 6 3.4794 -0.7319 1.4023 13 1 3.8084 0.2407 1.7682 14 6 3.8261 -1.8071 2.4341 15 7 2.0281 -0.7084 1.1908 16 6 1.1844 -1.3105 2.0521 17 8 0.0120 -1.4333 1.7667 18 6 1.6976 -1.8311 3.3699 19 6 0.5167 -2.2541 4.2460 20 6 1.0300 -2.7753 5.5635 21 1 2.0923 -2.8026 5.7566 22 6 0.1436 -3.2173 6.5225 23 7 0.5915 -3.6727 7.6722 24 14 -1.6938 -3.1708 6.1884 25 1 -2.1160 -4.4503 5.5642 26 1 -2.4246 -2.9788 7.4668 27 1 -2.0012 -2.0461 5.2687 28 1 -0.3632 0.5022 0.8966 29 1 -0.3634 0.5253 -0.8832 30 1 -0.3633 -1.0276 -0.0133 31 1 1.8790 -0.1171 -2.1171 32 1 1.5058 -1.6740 -1.3471 33 1 3.7137 -1.2824 -3.2254 34 1 7.2804 -1.8642 -0.9617 35 1 6.0422 -1.3639 1.1010 36 1 4.9005 -1.9905 2.4207 37 1 3.5278 -1.4681 3.4262 38 1 3.2971 -2.7284 2.1906 39 1 2.3453 -2.6901 3.1937 40 1 2.2625 -1.0477 3.8749 41 1 -0.1309 -1.3952 4.4221 42 1 -0.0482 -3.0375 3.7409 43 1 -0.0321 -3.9840 8.3467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334388246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:19 Heat of formation + Delta-G solvation = -9.889208 kcal Electronic energy + Delta-G solvation = -25455.847986 eV Core-core repulsion = 21803.265273 eV Total energy + Delta-G solvation = -3652.582713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.12249 -41.08954 -39.08041 -36.12377 -35.47325 -33.34380 -31.83331 -31.45326 -30.51434 -28.64181 -26.99016 -26.23544 -24.02462 -22.68850 -21.85935 -21.48865 -20.25794 -18.83369 -17.57501 -17.08560 -16.77524 -16.45585 -16.00629 -15.83411 -15.49217 -14.80169 -14.46995 -14.40607 -14.11363 -13.91378 -13.67402 -13.41624 -13.27078 -12.91319 -12.81616 -12.42356 -12.22888 -12.19176 -12.03100 -11.85326 -11.72301 -11.42588 -11.25676 -10.96439 -10.77379 -10.64704 -9.87952 -9.81449 -9.54196 -9.18326 -9.08893 -8.75340 -8.68803 -8.53191 -8.47109 -6.03998 -4.02525 0.86541 0.92993 3.01846 3.04835 3.25414 3.36979 3.43734 3.53725 3.95709 4.29100 4.38085 4.49965 4.53712 4.75006 4.80654 4.88821 4.94213 5.08983 5.11436 5.20748 5.31520 5.32044 5.44931 5.54143 5.63909 5.70848 5.73564 5.79800 5.83239 5.87352 5.97669 6.00327 6.13916 6.19764 6.25195 6.30138 6.46256 6.61577 6.69649 6.77813 7.36081 7.42562 7.64009 7.79587 8.48332 8.61644 8.98980 9.59550 11.08776 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.003641 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.227977 B = 7688.259314 C = 8587.116325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.145 3.855 3 H 0.073 0.927 4 C -0.096 4.096 5 C -0.036 4.036 6 C -0.157 4.157 7 C 0.097 3.903 8 F -0.142 7.142 9 C -0.156 4.156 10 C -0.081 4.081 11 C -0.097 4.097 12 C 0.187 3.813 13 H 0.086 0.914 14 C -0.198 4.198 15 N -0.621 5.621 16 C 0.521 3.479 17 O -0.529 6.529 18 C -0.147 4.147 19 C -0.004 4.004 20 C -0.523 4.523 21 H 0.073 0.927 22 C 0.069 3.931 23 N -0.904 5.904 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.262 1.262 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 7.943 -19.603 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.042 3.958 3 H 0.091 0.909 4 C -0.134 4.134 5 C -0.037 4.037 6 C -0.176 4.176 7 C 0.078 3.922 8 F -0.121 7.121 9 C -0.175 4.175 10 C -0.099 4.099 11 C -0.098 4.098 12 C 0.083 3.917 13 H 0.104 0.896 14 C -0.254 4.254 15 N -0.357 5.357 16 C 0.312 3.688 17 O -0.405 6.405 18 C -0.186 4.186 19 C -0.042 4.042 20 C -0.561 4.561 21 H 0.091 0.909 22 C -0.132 4.132 23 N -0.543 5.543 24 Si 0.704 3.296 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.186 1.186 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.570 7.782 -19.602 23.160 hybrid contribution -0.575 -0.070 -0.458 0.739 sum 8.995 7.713 -20.060 23.298 Atomic orbital electron populations 1.22247 0.92118 1.04947 1.00856 1.21163 0.96137 0.94756 0.83747 0.90861 1.20988 0.91018 1.02182 0.99165 1.19382 0.95723 0.97140 0.91438 1.21135 0.92763 1.04109 0.99588 1.17603 0.90559 1.01956 0.82129 1.91495 1.80135 1.91521 1.48929 1.21070 1.01092 1.04178 0.91174 1.21017 0.93193 0.97332 0.98338 1.19961 0.94146 1.01040 0.94695 1.19854 0.79786 1.00126 0.91922 0.89597 1.23607 1.02304 0.98771 1.00751 1.48396 1.05903 1.55980 1.25462 1.21419 0.85696 0.75965 0.85694 1.90652 1.17634 1.55662 1.76515 1.23015 1.02268 1.02096 0.91196 1.19479 0.93260 0.96881 0.94536 1.21095 0.95284 1.41935 0.97773 0.90922 1.24968 0.98905 0.94494 0.94859 1.69910 1.34957 1.43093 1.06299 0.86802 0.85767 0.79413 0.77577 1.20274 1.21525 1.18638 0.91736 0.93797 0.89152 0.89667 0.89509 0.84888 0.84606 0.84308 0.91452 0.87390 0.90184 0.86999 0.89125 0.96325 0.96175 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.62 37.16 0.28 -1.62 16 2 C 0.15 1.72 3.46 -67.64 -0.23 1.48 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.10 -0.97 5.21 -28.04 -0.15 -1.12 16 5 C -0.04 -0.38 5.76 -104.61 -0.60 -0.99 16 6 C -0.16 -1.56 9.57 -39.36 -0.38 -1.94 16 7 C 0.10 0.99 7.30 -39.53 -0.29 0.71 16 8 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 9 C -0.16 -1.42 10.04 -39.61 -0.40 -1.82 16 10 C -0.08 -0.72 8.95 -39.47 -0.35 -1.08 16 11 C -0.10 -1.02 5.44 -104.54 -0.57 -1.59 16 12 C 0.19 2.07 3.45 -68.93 -0.24 1.83 16 13 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.20 -2.23 7.04 37.16 0.26 -1.97 16 15 N -0.62 -8.46 2.93 -159.27 -0.47 -8.93 16 16 C 0.52 9.12 7.18 -10.99 -0.08 9.04 16 17 O -0.53 -10.82 11.77 5.55 0.07 -10.75 16 18 C -0.15 -2.71 3.22 -27.88 -0.09 -2.80 16 19 C 0.00 -0.09 3.38 -27.88 -0.09 -0.18 16 20 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 21 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 22 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 23 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 24 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 28 H 0.06 0.98 7.36 -51.93 -0.38 0.60 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 1.41 6.23 -51.93 -0.32 1.08 16 31 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.13 1.11 8.05 -52.49 -0.42 0.68 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 0.96 6.61 -52.49 -0.35 0.61 16 36 H 0.07 0.60 6.13 -51.93 -0.32 0.28 16 37 H 0.11 1.33 4.55 -51.93 -0.24 1.09 16 38 H 0.08 1.03 5.88 -51.93 -0.31 0.73 16 39 H 0.11 1.92 4.65 -51.92 -0.24 1.68 16 40 H 0.09 1.53 6.28 -51.93 -0.33 1.20 16 41 H 0.02 0.47 7.20 -51.92 -0.37 0.09 16 42 H 0.02 0.51 7.43 -51.93 -0.39 0.12 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -32.41 332.22 -8.38 -40.79 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.78 Total: -0.46 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -3.35 Total: -14.98 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.31 Total: -35.76 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.41 -8.38 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334388246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds