Wall clock time and date at job start Tue Mar 31 2020 09:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.76707 * 2 1 4 4 C 1.52782 * 109.81362 * 239.24393 * 2 1 3 5 5 C 1.50602 * 110.86218 * 192.90740 * 4 2 1 6 6 C 1.38948 * 117.59705 * 199.52063 * 5 4 2 7 7 C 1.38129 * 120.56420 * 181.16657 * 6 5 4 8 8 F 1.35100 * 120.11410 * 179.97438 * 7 6 5 9 9 C 1.38487 * 119.77467 * 359.96851 * 7 6 5 10 10 C 1.37918 * 119.68718 * 359.77542 * 9 7 6 11 11 C 1.37693 * 122.85798 * 20.23413 * 5 4 2 12 12 C 1.50812 * 122.33437 * 358.37259 * 11 5 4 13 13 H 1.09000 * 109.44000 * 251.64299 * 12 11 5 14 14 C 1.53009 * 109.43444 * 131.76810 * 12 11 5 15 15 N 1.46678 * 109.67598 * 11.71055 * 12 11 5 16 16 C 1.34772 * 121.34151 * 135.55442 * 15 12 11 17 17 O 1.21283 * 120.00283 * 189.90113 * 16 15 12 18 18 C 1.50702 * 119.99833 * 9.90445 * 16 15 12 19 19 C 1.52999 * 109.47436 * 170.79521 * 18 16 15 20 20 C 1.50702 * 109.47436 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99858 * 359.97438 * 20 19 18 22 22 C 1.37869 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99915 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00204 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47398 * 89.99780 * 24 22 20 26 26 H 1.48502 * 109.46984 * 209.99845 * 24 22 20 27 27 H 1.48505 * 109.46712 * 329.99478 * 24 22 20 28 28 H 1.08997 * 109.46539 * 299.25072 * 1 2 3 29 29 H 1.08997 * 109.47453 * 59.25960 * 1 2 3 30 30 H 1.09002 * 109.47018 * 179.25717 * 1 2 3 31 31 H 1.09001 * 109.19989 * 72.54890 * 4 2 1 32 32 H 1.09002 * 109.19917 * 313.25695 * 4 2 1 33 33 H 1.08002 * 119.71509 * 1.15035 * 6 5 4 34 34 H 1.07992 * 120.15814 * 179.49160 * 9 7 6 35 35 H 1.08000 * 119.73053 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.46869 * 46.49460 * 14 12 11 37 37 H 1.09003 * 109.46341 * 166.48940 * 14 12 11 38 38 H 1.08995 * 109.47070 * 286.48567 * 14 12 11 39 39 H 1.09007 * 109.46801 * 290.79057 * 18 16 15 40 40 H 1.08995 * 109.47505 * 50.78835 * 18 16 15 41 41 H 1.09007 * 109.46747 * 299.99569 * 19 18 16 42 42 H 1.08995 * 109.47333 * 59.99209 * 19 18 16 43 43 H 0.96996 * 119.99837 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8987 1.0258 0.0000 4 6 2.0479 -0.7351 -1.2352 5 6 3.5202 -1.0254 -1.1085 6 6 4.2245 -1.3012 -2.2741 7 6 5.5724 -1.5996 -2.2263 8 9 6.2482 -1.8668 -3.3652 9 6 6.2286 -1.6237 -1.0070 10 6 5.5312 -1.3449 0.1497 11 6 4.1772 -1.0411 0.1015 12 6 3.4794 -0.7319 1.4023 13 1 3.8084 0.2407 1.7682 14 6 3.8261 -1.8071 2.4341 15 7 2.0281 -0.7084 1.1908 16 6 1.1844 -1.3105 2.0521 17 8 0.0120 -1.4333 1.7667 18 6 1.6976 -1.8311 3.3699 19 6 0.5167 -2.2541 4.2460 20 6 1.0300 -2.7753 5.5635 21 1 2.0923 -2.8026 5.7566 22 6 0.1436 -3.2173 6.5225 23 7 0.5915 -3.6727 7.6722 24 14 -1.6938 -3.1708 6.1884 25 1 -2.1160 -4.4503 5.5642 26 1 -2.4246 -2.9788 7.4668 27 1 -2.0012 -2.0461 5.2687 28 1 -0.3632 0.5022 0.8966 29 1 -0.3634 0.5253 -0.8832 30 1 -0.3633 -1.0276 -0.0133 31 1 1.8790 -0.1171 -2.1171 32 1 1.5058 -1.6740 -1.3471 33 1 3.7137 -1.2824 -3.2254 34 1 7.2804 -1.8642 -0.9617 35 1 6.0422 -1.3639 1.1010 36 1 4.9005 -1.9905 2.4207 37 1 3.5278 -1.4681 3.4262 38 1 3.2971 -2.7284 2.1906 39 1 2.3453 -2.6901 3.1937 40 1 2.2625 -1.0477 3.8749 41 1 -0.1309 -1.3952 4.4221 42 1 -0.0482 -3.0375 3.7409 43 1 -0.0321 -3.9840 8.3467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334388246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:18 Heat of formation + Delta-G solvation = -27.979857 kcal Electronic energy + Delta-G solvation = -25456.632456 eV Core-core repulsion = 21803.265273 eV Total energy + Delta-G solvation = -3653.367182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.90165 -42.12180 -40.09923 -37.21610 -36.62640 -35.14885 -33.28650 -32.49620 -31.63412 -29.75008 -28.27448 -27.34528 -25.31821 -23.60439 -22.83258 -22.62408 -21.68251 -20.05645 -18.88143 -18.36478 -17.83640 -17.56938 -16.99899 -16.71279 -16.58559 -16.16827 -15.86224 -15.52328 -15.22609 -14.97312 -14.86987 -14.64941 -14.35120 -14.28247 -13.89322 -13.85394 -13.54133 -13.20754 -13.16669 -12.96374 -12.81499 -12.59825 -12.39141 -12.33090 -12.17356 -11.88029 -11.72966 -11.52188 -11.32582 -10.80605 -10.74206 -10.04850 -9.90118 -9.63862 -9.45111 -8.29040 -6.30653 0.11058 0.22455 1.33254 1.35522 1.49703 1.68429 1.95498 2.36234 2.52112 3.07052 3.20849 3.44208 3.62061 3.73520 3.81811 3.94655 4.03531 4.12780 4.16663 4.24429 4.31318 4.37171 4.47959 4.61203 4.63808 4.73005 4.77974 4.86498 4.90442 4.95978 5.01469 5.07714 5.14468 5.18923 5.26101 5.33499 5.34847 5.43492 5.50356 5.51050 5.64400 5.72864 5.89836 6.27093 6.46228 6.76132 7.29432 7.34693 8.86390 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.003641 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.227977 B = 7688.259314 C = 8587.116325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.141 3.859 3 H 0.096 0.904 4 C -0.089 4.089 5 C -0.048 4.048 6 C -0.159 4.159 7 C 0.082 3.918 8 F -0.149 7.149 9 C -0.155 4.155 10 C -0.077 4.077 11 C -0.106 4.106 12 C 0.185 3.815 13 H 0.108 0.892 14 C -0.197 4.197 15 N -0.614 5.614 16 C 0.521 3.479 17 O -0.567 6.567 18 C -0.140 4.140 19 C 0.001 3.999 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.014 3.986 23 N -0.943 5.943 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.262 1.262 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.004 0.996 42 H 0.005 0.995 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.500 8.995 -21.244 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.126 4.126 5 C -0.049 4.049 6 C -0.178 4.178 7 C 0.063 3.937 8 F -0.127 7.127 9 C -0.173 4.173 10 C -0.095 4.095 11 C -0.107 4.107 12 C 0.082 3.918 13 H 0.125 0.875 14 C -0.253 4.253 15 N -0.348 5.348 16 C 0.311 3.689 17 O -0.446 6.446 18 C -0.179 4.179 19 C -0.037 4.037 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.183 4.183 23 N -0.584 5.584 24 Si 0.760 3.240 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.187 1.187 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.834 8.852 -21.270 25.459 hybrid contribution -0.837 -0.383 0.008 0.920 sum 9.997 8.469 -21.262 24.975 Atomic orbital electron populations 1.22080 0.93298 1.03168 1.00904 1.21367 0.95230 0.95899 0.83593 0.88613 1.20917 0.90747 1.01798 0.99180 1.19440 0.95771 0.97871 0.91773 1.21250 0.92794 1.03708 1.00002 1.17841 0.90903 1.02579 0.82418 1.91480 1.80251 1.91658 1.49351 1.21332 1.02099 1.03233 0.90668 1.21236 0.92579 0.96386 0.99339 1.19977 0.94844 1.01786 0.94118 1.20069 0.78053 1.01144 0.92530 0.87452 1.23485 1.04036 0.97818 0.99981 1.48367 1.06789 1.54563 1.25121 1.21118 0.85503 0.76329 0.85903 1.90660 1.19200 1.57487 1.77287 1.23016 1.00041 1.03418 0.91392 1.19345 0.95023 0.95600 0.93765 1.21422 0.94565 1.40899 0.99111 0.92705 1.25753 1.03114 0.94609 0.94842 1.70017 1.36441 1.44637 1.07312 0.85888 0.81060 0.79433 0.77653 1.19707 1.20542 1.18684 0.94261 0.90922 0.91958 0.87014 0.90886 0.83662 0.82674 0.82014 0.88531 0.88601 0.92090 0.85667 0.87398 0.97765 0.97673 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 7.62 71.98 0.55 -2.98 16 2 C 0.14 3.07 3.46 44.78 0.15 3.22 16 3 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.09 -1.60 5.21 29.74 0.15 -1.45 16 5 C -0.05 -0.89 5.76 -19.85 -0.11 -1.01 16 6 C -0.16 -2.78 9.57 22.41 0.21 -2.56 16 7 C 0.08 1.49 7.30 22.30 0.16 1.65 16 8 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 9 C -0.15 -2.34 10.04 22.25 0.22 -2.12 16 10 C -0.08 -1.12 8.95 22.34 0.20 -0.92 16 11 C -0.11 -1.92 5.44 -19.81 -0.11 -2.02 16 12 C 0.18 3.62 3.45 44.25 0.15 3.77 16 13 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.20 -4.01 7.04 71.99 0.51 -3.51 16 15 N -0.61 -15.85 2.93 -776.21 -2.28 -18.12 16 16 C 0.52 18.13 7.18 87.66 0.63 18.76 16 17 O -0.57 -23.67 11.77 -3.04 -0.04 -23.71 16 18 C -0.14 -5.14 3.22 29.85 0.10 -5.04 16 19 C 0.00 0.03 3.38 29.85 0.10 0.13 16 20 C -0.52 -29.43 9.66 25.60 0.25 -29.19 16 21 H 0.05 3.21 7.99 -2.91 -0.02 3.19 16 22 C 0.01 0.84 5.47 84.65 0.46 1.31 16 23 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 24 Si 0.93 46.63 27.47 68.60 1.88 48.51 16 25 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.26 -13.01 6.54 99.48 0.65 -12.36 16 28 H 0.04 1.19 7.36 -2.39 -0.02 1.17 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.97 6.23 -2.39 -0.01 1.95 16 31 H 0.11 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.15 2.07 8.05 -2.91 -0.02 2.05 16 34 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.16 1.54 6.61 -2.91 -0.02 1.52 16 36 H 0.10 1.39 6.13 -2.39 -0.01 1.38 16 37 H 0.10 2.20 4.55 -2.39 -0.01 2.18 16 38 H 0.06 1.50 5.88 -2.39 -0.01 1.48 16 39 H 0.13 4.26 4.65 -2.38 -0.01 4.25 16 40 H 0.11 3.56 6.28 -2.39 -0.01 3.54 16 41 H 0.00 0.20 7.20 -2.38 -0.02 0.19 16 42 H 0.00 0.25 7.43 -2.39 -0.02 0.23 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.27 332.22 5.26 -66.02 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.97 Total: 9.57 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 3.63 Total: -21.96 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.98 Total: -76.24 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.04 Total: -23.71 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.51 kcal Total: -71.27 5.26 -66.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334388246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.037 kcal (2) G-P(sol) polarization free energy of solvation -71.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds