Wall clock time and date at job start Tue Mar 31 2020 09:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.40078 * 2 1 4 4 C 1.50455 * 109.39353 * 240.34437 * 2 1 3 5 5 C 1.38855 * 117.79735 * 49.13456 * 4 2 1 6 6 C 1.37910 * 120.54349 * 179.05332 * 5 4 2 7 7 C 1.38486 * 119.69167 * 0.02562 * 6 5 4 8 8 F 1.35099 * 120.11528 * 180.25304 * 7 6 5 9 9 C 1.38134 * 119.76983 * 0.22012 * 7 6 5 10 10 C 1.37691 * 122.31359 * 228.61777 * 4 2 1 11 11 C 1.50596 * 122.85655 * 1.25701 * 10 4 2 12 12 C 1.52792 * 110.86122 * 339.82832 * 11 10 4 13 13 H 1.09004 * 109.81780 * 287.87524 * 12 11 10 14 14 C 1.52997 * 109.77808 * 167.10215 * 12 11 10 15 15 N 1.46677 * 109.44040 * 119.90189 * 2 1 3 16 16 C 1.34783 * 121.33467 * 344.48635 * 15 2 1 17 17 O 1.21275 * 119.99653 * 169.95050 * 16 15 2 18 18 C 1.50701 * 119.99930 * 349.67451 * 16 15 2 19 19 C 1.52998 * 109.47085 * 190.01592 * 18 16 15 20 20 C 1.50701 * 109.47085 * 180.02562 * 19 18 16 21 21 H 1.07992 * 120.00000 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99902 * 180.02562 * 20 19 18 23 23 N 1.31505 * 120.00022 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99759 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47007 * 90.00181 * 24 22 20 26 26 H 1.48506 * 109.46830 * 209.99648 * 24 22 20 27 27 H 1.48498 * 109.47323 * 329.99840 * 24 22 20 28 28 H 1.09006 * 109.46620 * 313.92091 * 1 2 3 29 29 H 1.08998 * 109.47600 * 73.92504 * 1 2 3 30 30 H 1.09001 * 109.46923 * 193.93288 * 1 2 3 31 31 H 1.08003 * 119.72395 * 359.04922 * 5 4 2 32 32 H 1.08006 * 120.15509 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.71554 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.20046 * 219.47393 * 11 10 4 35 35 H 1.09004 * 109.20446 * 100.18124 * 11 10 4 36 36 H 1.08998 * 109.46724 * 301.54670 * 14 12 11 37 37 H 1.09000 * 109.47459 * 61.55187 * 14 12 11 38 38 H 1.09005 * 109.47237 * 181.55294 * 14 12 11 39 39 H 1.09002 * 109.47340 * 310.02173 * 18 16 15 40 40 H 1.09005 * 109.47038 * 70.02127 * 18 16 15 41 41 H 1.09000 * 109.46997 * 300.00572 * 19 18 16 42 42 H 1.09005 * 109.46746 * 60.00356 * 19 18 16 43 43 H 0.96998 * 120.00435 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0296 -0.7022 -1.2333 5 6 1.4866 -0.3292 -2.4556 6 6 1.9171 -0.9221 -3.6240 7 6 2.8988 -1.8978 -3.5768 8 9 3.3305 -2.4806 -4.7166 9 6 3.4355 -2.2725 -2.3604 10 6 2.9997 -1.6781 -1.1826 11 6 3.6223 -2.1450 0.1066 12 6 3.4300 -1.1069 1.2111 13 1 4.0709 -0.2452 1.0238 14 6 3.7760 -1.7240 2.5676 15 7 2.0182 -0.6895 1.1990 16 6 1.2054 -0.9361 2.2456 17 8 1.5763 -1.6623 3.1433 18 6 -0.1617 -0.3046 2.3031 19 6 -0.7731 -0.5373 3.6861 20 6 -2.1405 0.0937 3.7434 21 1 -2.5341 0.6087 2.8797 22 6 -2.8889 0.0134 4.8986 23 7 -4.0823 0.5635 4.9485 24 14 -2.2076 -0.8770 6.3929 25 1 -1.4568 0.0831 7.2414 26 1 -3.3275 -1.4587 7.1757 27 1 -1.2970 -1.9629 5.9495 28 1 -0.3633 0.7129 0.7403 29 1 -0.3634 0.2845 -0.9874 30 1 -0.3633 -0.9974 0.2475 31 1 0.7207 0.4314 -2.4916 32 1 1.4901 -0.6275 -4.5713 33 1 4.2007 -3.0338 -2.3246 34 1 4.6885 -2.3095 -0.0491 35 1 3.1565 -3.0824 0.4109 36 1 3.1416 -2.5927 2.7439 37 1 4.8218 -2.0310 2.5711 38 1 3.6108 -0.9879 3.3544 39 1 -0.0752 0.7663 2.1195 40 1 -0.8013 -0.7531 1.5429 41 1 -0.8595 -1.6083 3.8696 42 1 -0.1335 -0.0888 4.4463 43 1 -4.6087 0.5074 5.7613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334388247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:21 Heat of formation + Delta-G solvation = -10.794580 kcal Electronic energy + Delta-G solvation = -25454.259973 eV Core-core repulsion = 21801.638000 eV Total energy + Delta-G solvation = -3652.621973 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.12384 -41.09858 -39.08456 -36.12696 -35.46922 -33.34623 -31.83343 -31.46399 -30.51459 -28.63744 -26.99135 -26.23364 -24.02985 -22.69106 -21.85918 -21.48987 -20.25961 -18.82983 -17.57633 -17.09314 -16.77978 -16.45732 -15.99929 -15.83538 -15.49061 -14.80620 -14.48347 -14.40861 -14.08677 -13.91644 -13.68150 -13.42219 -13.26491 -12.91599 -12.81981 -12.43812 -12.20668 -12.18393 -12.01378 -11.83092 -11.77151 -11.43810 -11.26002 -10.96383 -10.74954 -10.69675 -9.89706 -9.70235 -9.61735 -9.18571 -9.09593 -8.75377 -8.68859 -8.53463 -8.46923 -6.03989 -4.02508 0.86299 0.92886 3.01830 3.04713 3.25149 3.36561 3.43651 3.54363 3.95604 4.29487 4.38296 4.50024 4.53906 4.74921 4.80676 4.88892 4.94226 5.08868 5.11472 5.20572 5.31465 5.32173 5.44865 5.54110 5.63957 5.70739 5.73571 5.79835 5.83158 5.87280 5.97806 6.00199 6.13827 6.19783 6.24870 6.30029 6.46377 6.61483 6.69659 6.77816 7.34455 7.44067 7.64006 7.79589 8.48344 8.61629 8.99042 9.59540 11.08788 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.003634 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.197959 B = 7703.782322 C = 8606.769234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.187 3.813 3 H 0.086 0.914 4 C -0.097 4.097 5 C -0.081 4.081 6 C -0.156 4.156 7 C 0.097 3.903 8 F -0.142 7.142 9 C -0.157 4.157 10 C -0.037 4.037 11 C -0.096 4.096 12 C 0.145 3.855 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.621 5.621 16 C 0.521 3.479 17 O -0.528 6.528 18 C -0.146 4.146 19 C -0.004 4.004 20 C -0.523 4.523 21 H 0.073 0.927 22 C 0.069 3.931 23 N -0.904 5.904 24 Si 0.876 3.124 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.261 1.261 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.025 0.975 42 H 0.014 0.986 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.384 -2.160 -16.762 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.083 3.917 3 H 0.104 0.896 4 C -0.098 4.098 5 C -0.099 4.099 6 C -0.175 4.175 7 C 0.078 3.922 8 F -0.121 7.121 9 C -0.176 4.176 10 C -0.037 4.037 11 C -0.134 4.134 12 C 0.042 3.958 13 H 0.092 0.908 14 C -0.202 4.202 15 N -0.357 5.357 16 C 0.312 3.688 17 O -0.404 6.404 18 C -0.185 4.185 19 C -0.042 4.042 20 C -0.561 4.561 21 H 0.091 0.909 22 C -0.132 4.132 23 N -0.542 5.542 24 Si 0.703 3.297 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.185 1.185 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.429 -2.556 -16.158 23.185 hybrid contribution 0.414 -0.494 0.320 0.719 sum 16.843 -3.050 -15.838 23.321 Atomic orbital electron populations 1.23588 0.92369 1.05160 1.04258 1.19774 0.95549 0.94869 0.81529 0.89611 1.19888 0.97080 0.97566 0.95289 1.21011 0.98916 0.99359 0.90599 1.21069 0.98460 0.97976 0.99999 1.17603 0.97125 0.95596 0.81925 1.91495 1.88773 1.83073 1.48737 1.21135 1.02861 1.02752 0.90835 1.19380 0.95116 0.94737 0.94462 1.20991 1.00884 1.00026 0.91473 1.21165 0.82351 0.96196 0.96092 0.90845 1.22247 0.99823 1.03657 0.94435 1.48397 1.10328 1.60132 1.16878 1.21421 0.87304 0.80036 0.80012 1.90652 1.74948 1.36381 1.38459 1.22992 0.91366 1.00609 1.03527 1.19480 0.95894 0.97767 0.91013 1.21094 0.99271 1.35445 1.00291 0.90922 1.24966 0.94616 0.94951 0.98675 1.69903 1.10950 1.45130 1.28265 0.86817 0.78789 0.81063 0.83006 1.20336 1.21491 1.18507 0.87460 0.91450 0.90191 0.84307 0.84604 0.84889 0.89662 0.89514 0.89162 0.93800 0.91728 0.89156 0.87052 0.95706 0.96790 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 7.05 37.16 0.26 -1.96 16 2 C 0.19 2.07 3.42 -69.10 -0.24 1.83 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.10 -1.02 5.42 -104.71 -0.57 -1.58 16 5 C -0.08 -0.72 8.94 -39.47 -0.35 -1.07 16 6 C -0.16 -1.42 10.03 -39.61 -0.40 -1.81 16 7 C 0.10 0.99 7.30 -39.53 -0.29 0.70 16 8 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 9 C -0.16 -1.56 9.57 -39.36 -0.38 -1.93 16 10 C -0.04 -0.39 5.76 -104.61 -0.60 -0.99 16 11 C -0.10 -0.97 5.21 -28.04 -0.15 -1.12 16 12 C 0.15 1.72 3.47 -67.64 -0.23 1.48 16 13 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.14 -1.90 7.62 37.16 0.28 -1.62 16 15 N -0.62 -8.47 2.94 -159.47 -0.47 -8.93 16 16 C 0.52 9.12 7.16 -10.98 -0.08 9.04 16 17 O -0.53 -10.82 11.76 5.56 0.07 -10.75 16 18 C -0.15 -2.70 3.22 -27.88 -0.09 -2.79 16 19 C 0.00 -0.09 3.39 -27.88 -0.09 -0.18 16 20 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 21 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 22 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 23 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 24 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 28 H 0.11 1.32 4.59 -51.93 -0.24 1.08 16 29 H 0.07 0.60 6.13 -51.93 -0.32 0.28 16 30 H 0.08 1.03 5.86 -51.93 -0.30 0.73 16 31 H 0.14 0.96 6.64 -52.48 -0.35 0.61 16 32 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.13 1.10 8.05 -52.48 -0.42 0.68 16 34 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 36 H 0.09 1.41 6.23 -51.93 -0.32 1.08 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.98 7.36 -51.93 -0.38 0.60 16 39 H 0.09 1.52 6.26 -51.93 -0.32 1.20 16 40 H 0.11 1.91 4.70 -51.93 -0.24 1.67 16 41 H 0.02 0.63 7.05 -51.93 -0.37 0.27 16 42 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -32.41 332.23 -8.39 -40.79 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.78 Total: -0.47 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.35 Total: -14.95 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.31 Total: -35.77 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.41 -8.39 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334388247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds