Wall clock time and date at job start Tue Mar 31 2020 09:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.40078 * 2 1 4 4 C 1.50455 * 109.39353 * 240.34437 * 2 1 3 5 5 C 1.38855 * 117.79735 * 49.13456 * 4 2 1 6 6 C 1.37910 * 120.54349 * 179.05332 * 5 4 2 7 7 C 1.38486 * 119.69167 * 0.02562 * 6 5 4 8 8 F 1.35099 * 120.11528 * 180.25304 * 7 6 5 9 9 C 1.38134 * 119.76983 * 0.22012 * 7 6 5 10 10 C 1.37691 * 122.31359 * 228.61777 * 4 2 1 11 11 C 1.50596 * 122.85655 * 1.25701 * 10 4 2 12 12 C 1.52792 * 110.86122 * 339.82832 * 11 10 4 13 13 H 1.09004 * 109.81780 * 287.87524 * 12 11 10 14 14 C 1.52997 * 109.77808 * 167.10215 * 12 11 10 15 15 N 1.46677 * 109.44040 * 119.90189 * 2 1 3 16 16 C 1.34783 * 121.33467 * 344.48635 * 15 2 1 17 17 O 1.21275 * 119.99653 * 169.95050 * 16 15 2 18 18 C 1.50701 * 119.99930 * 349.67451 * 16 15 2 19 19 C 1.52998 * 109.47085 * 190.01592 * 18 16 15 20 20 C 1.50701 * 109.47085 * 180.02562 * 19 18 16 21 21 H 1.07992 * 120.00000 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99902 * 180.02562 * 20 19 18 23 23 N 1.31505 * 120.00022 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99759 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47007 * 90.00181 * 24 22 20 26 26 H 1.48506 * 109.46830 * 209.99648 * 24 22 20 27 27 H 1.48498 * 109.47323 * 329.99840 * 24 22 20 28 28 H 1.09006 * 109.46620 * 313.92091 * 1 2 3 29 29 H 1.08998 * 109.47600 * 73.92504 * 1 2 3 30 30 H 1.09001 * 109.46923 * 193.93288 * 1 2 3 31 31 H 1.08003 * 119.72395 * 359.04922 * 5 4 2 32 32 H 1.08006 * 120.15509 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.71554 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.20046 * 219.47393 * 11 10 4 35 35 H 1.09004 * 109.20446 * 100.18124 * 11 10 4 36 36 H 1.08998 * 109.46724 * 301.54670 * 14 12 11 37 37 H 1.09000 * 109.47459 * 61.55187 * 14 12 11 38 38 H 1.09005 * 109.47237 * 181.55294 * 14 12 11 39 39 H 1.09002 * 109.47340 * 310.02173 * 18 16 15 40 40 H 1.09005 * 109.47038 * 70.02127 * 18 16 15 41 41 H 1.09000 * 109.46997 * 300.00572 * 19 18 16 42 42 H 1.09005 * 109.46746 * 60.00356 * 19 18 16 43 43 H 0.96998 * 120.00435 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0296 -0.7022 -1.2333 5 6 1.4866 -0.3292 -2.4556 6 6 1.9171 -0.9221 -3.6240 7 6 2.8988 -1.8978 -3.5768 8 9 3.3305 -2.4806 -4.7166 9 6 3.4355 -2.2725 -2.3604 10 6 2.9997 -1.6781 -1.1826 11 6 3.6223 -2.1450 0.1066 12 6 3.4300 -1.1069 1.2111 13 1 4.0709 -0.2452 1.0238 14 6 3.7760 -1.7240 2.5676 15 7 2.0182 -0.6895 1.1990 16 6 1.2054 -0.9361 2.2456 17 8 1.5763 -1.6623 3.1433 18 6 -0.1617 -0.3046 2.3031 19 6 -0.7731 -0.5373 3.6861 20 6 -2.1405 0.0937 3.7434 21 1 -2.5341 0.6087 2.8797 22 6 -2.8889 0.0134 4.8986 23 7 -4.0823 0.5635 4.9485 24 14 -2.2076 -0.8770 6.3929 25 1 -1.4568 0.0831 7.2414 26 1 -3.3275 -1.4587 7.1757 27 1 -1.2970 -1.9629 5.9495 28 1 -0.3633 0.7129 0.7403 29 1 -0.3634 0.2845 -0.9874 30 1 -0.3633 -0.9974 0.2475 31 1 0.7207 0.4314 -2.4916 32 1 1.4901 -0.6275 -4.5713 33 1 4.2007 -3.0338 -2.3246 34 1 4.6885 -2.3095 -0.0491 35 1 3.1565 -3.0824 0.4109 36 1 3.1416 -2.5927 2.7439 37 1 4.8218 -2.0310 2.5711 38 1 3.6108 -0.9879 3.3544 39 1 -0.0752 0.7663 2.1195 40 1 -0.8013 -0.7531 1.5429 41 1 -0.8595 -1.6083 3.8696 42 1 -0.1335 -0.0888 4.4463 43 1 -4.6087 0.5074 5.7613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334388247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:21 Heat of formation + Delta-G solvation = -28.892649 kcal Electronic energy + Delta-G solvation = -25455.044764 eV Core-core repulsion = 21801.638000 eV Total energy + Delta-G solvation = -3653.406764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.90166 -42.12906 -40.10556 -37.21853 -36.62091 -35.15216 -33.28813 -32.50548 -31.63675 -29.74311 -28.27557 -27.34426 -25.32190 -23.60605 -22.82971 -22.62910 -21.68484 -20.05283 -18.88404 -18.36522 -17.83914 -17.57475 -16.99249 -16.71678 -16.58474 -16.18380 -15.84746 -15.51608 -15.22441 -14.96803 -14.88241 -14.66757 -14.35961 -14.27722 -13.87188 -13.81440 -13.55561 -13.21902 -13.17461 -12.96567 -12.82783 -12.64211 -12.39469 -12.28677 -12.16916 -11.88755 -11.73304 -11.52179 -11.30278 -10.85556 -10.72824 -10.04976 -9.90165 -9.64105 -9.44759 -8.29028 -6.30646 0.10922 0.22448 1.32789 1.35655 1.50293 1.68274 1.95363 2.36327 2.51973 3.07050 3.20864 3.44727 3.62278 3.73707 3.81879 3.94850 4.03549 4.12660 4.16634 4.24355 4.31344 4.37280 4.47884 4.60966 4.63708 4.73025 4.77854 4.86511 4.90539 4.95947 5.01197 5.07541 5.14451 5.18937 5.25962 5.33732 5.35114 5.42748 5.50642 5.50988 5.64497 5.72897 5.89836 6.27111 6.46128 6.76153 7.29363 7.34675 8.86407 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.003634 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.197959 B = 7703.782322 C = 8606.769234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.184 3.816 3 H 0.108 0.892 4 C -0.106 4.106 5 C -0.077 4.077 6 C -0.155 4.155 7 C 0.082 3.918 8 F -0.149 7.149 9 C -0.159 4.159 10 C -0.048 4.048 11 C -0.089 4.089 12 C 0.141 3.859 13 H 0.096 0.904 14 C -0.137 4.137 15 N -0.614 5.614 16 C 0.521 3.479 17 O -0.567 6.567 18 C -0.139 4.139 19 C 0.001 3.999 20 C -0.522 4.522 21 H 0.055 0.945 22 C 0.015 3.985 23 N -0.943 5.943 24 Si 0.934 3.066 25 H -0.269 1.269 26 H -0.281 1.281 27 H -0.263 1.263 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.006 0.994 42 H 0.003 0.997 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.977 -1.844 -18.403 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.082 3.918 3 H 0.125 0.875 4 C -0.107 4.107 5 C -0.095 4.095 6 C -0.173 4.173 7 C 0.063 3.937 8 F -0.127 7.127 9 C -0.177 4.177 10 C -0.049 4.049 11 C -0.127 4.127 12 C 0.039 3.961 13 H 0.114 0.886 14 C -0.194 4.194 15 N -0.348 5.348 16 C 0.312 3.688 17 O -0.446 6.446 18 C -0.178 4.178 19 C -0.037 4.037 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.183 4.183 23 N -0.584 5.584 24 Si 0.759 3.241 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.188 1.188 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.025 0.975 42 H 0.021 0.979 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.046 -2.225 -17.843 25.475 hybrid contribution -0.071 -0.564 0.706 0.906 sum 17.975 -2.789 -17.137 24.991 Atomic orbital electron populations 1.23468 0.92611 1.03569 1.05610 1.19989 0.95367 0.95774 0.80702 0.87467 1.19904 0.97474 0.97952 0.95385 1.21231 0.98968 0.99518 0.89818 1.21331 0.97789 0.97209 1.00983 1.17840 0.97814 0.96217 0.81864 1.91480 1.88933 1.83279 1.49045 1.21249 1.03072 1.02882 0.90540 1.19438 0.95617 0.95215 0.94610 1.20920 1.02489 0.98601 0.90656 1.21370 0.81293 0.97515 0.95911 0.88593 1.22081 1.00988 1.01813 0.94566 1.48367 1.10782 1.59188 1.16496 1.21117 0.87231 0.79833 0.80660 1.90660 1.75641 1.38095 1.40219 1.22988 0.92426 1.02150 1.00218 1.19345 0.94158 0.95900 0.94330 1.21421 1.00649 1.34493 0.99460 0.92715 1.25752 0.94963 0.95959 1.01631 1.70010 1.12241 1.46881 1.29267 0.85898 0.78274 0.79982 0.79954 1.19468 1.20610 1.18773 0.88648 0.88547 0.92122 0.82006 0.82661 0.83668 0.87014 0.90904 0.91990 0.90925 0.94218 0.87377 0.85787 0.97525 0.97890 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.01 7.05 71.98 0.51 -3.50 16 2 C 0.18 3.61 3.42 44.14 0.15 3.76 16 3 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.11 -1.91 5.42 -19.92 -0.11 -2.02 16 5 C -0.08 -1.12 8.94 22.34 0.20 -0.92 16 6 C -0.15 -2.33 10.03 22.25 0.22 -2.11 16 7 C 0.08 1.48 7.30 22.30 0.16 1.65 16 8 F -0.15 -2.95 17.27 44.97 0.78 -2.18 16 9 C -0.16 -2.77 9.57 22.41 0.21 -2.56 16 10 C -0.05 -0.90 5.76 -19.86 -0.11 -1.01 16 11 C -0.09 -1.61 5.21 29.75 0.16 -1.46 16 12 C 0.14 3.07 3.47 44.78 0.16 3.23 16 13 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 14 C -0.14 -3.52 7.62 71.98 0.55 -2.97 16 15 N -0.61 -15.85 2.94 -776.84 -2.28 -18.13 16 16 C 0.52 18.15 7.16 87.66 0.63 18.77 16 17 O -0.57 -23.69 11.76 -3.01 -0.04 -23.72 16 18 C -0.14 -5.11 3.22 29.85 0.10 -5.02 16 19 C 0.00 0.03 3.39 29.85 0.10 0.13 16 20 C -0.52 -29.46 9.66 25.60 0.25 -29.21 16 21 H 0.05 3.21 7.99 -2.91 -0.02 3.18 16 22 C 0.01 0.85 5.47 84.66 0.46 1.32 16 23 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 24 Si 0.93 46.58 27.47 68.60 1.88 48.47 16 25 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 28 H 0.10 2.18 4.59 -2.38 -0.01 2.17 16 29 H 0.10 1.39 6.13 -2.39 -0.01 1.38 16 30 H 0.06 1.49 5.86 -2.39 -0.01 1.48 16 31 H 0.16 1.53 6.64 -2.91 -0.02 1.51 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.15 2.07 8.05 -2.91 -0.02 2.05 16 34 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 35 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 36 H 0.06 1.96 6.23 -2.39 -0.01 1.95 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.20 7.36 -2.38 -0.02 1.18 16 39 H 0.11 3.56 6.26 -2.39 -0.01 3.54 16 40 H 0.12 4.24 4.70 -2.38 -0.01 4.23 16 41 H 0.01 0.33 7.05 -2.39 -0.02 0.32 16 42 H 0.00 0.14 7.57 -2.38 -0.02 0.12 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.29 332.23 5.25 -66.04 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.98 Total: 9.57 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 3.63 Total: -21.92 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.98 Total: -76.25 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Total: -71.29 5.25 -66.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334388247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.146 kcal (2) G-P(sol) polarization free energy of solvation -71.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds