Wall clock time and date at job start Tue Mar 31 2020 09:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.80961 * 2 1 4 4 C 1.52786 * 109.76860 * 120.76672 * 2 1 3 5 5 C 1.50605 * 110.85815 * 167.04657 * 4 2 1 6 6 C 1.38945 * 117.59790 * 160.42963 * 5 4 2 7 7 C 1.38122 * 120.57086 * 179.43455 * 6 5 4 8 8 F 1.35106 * 120.11725 * 179.51640 * 7 6 5 9 9 C 1.38489 * 119.77331 * 359.79302 * 7 6 5 10 10 C 1.37922 * 119.68849 * 0.21871 * 9 7 6 11 11 C 1.37692 * 122.86278 * 339.98564 * 5 4 2 12 12 C 1.50815 * 122.33988 * 1.25147 * 11 5 4 13 13 H 1.09001 * 109.43635 * 228.50418 * 12 11 5 14 14 C 1.53006 * 109.40339 * 108.61952 * 12 11 5 15 15 N 1.46672 * 109.67645 * 348.57400 * 12 11 5 16 16 C 1.34779 * 121.33957 * 224.37024 * 15 12 11 17 17 O 1.21278 * 120.00012 * 185.23317 * 16 15 12 18 18 C 1.50703 * 119.99912 * 5.23331 * 16 15 12 19 19 C 1.52991 * 109.47217 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.47217 * 180.02562 * 19 18 16 21 21 H 1.07992 * 120.00173 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99923 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00340 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47275 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47020 * 120.00310 * 24 22 20 27 27 H 1.48507 * 109.47203 * 240.00390 * 24 22 20 28 28 H 1.09004 * 109.47249 * 302.24430 * 1 2 3 29 29 H 1.09003 * 109.46942 * 62.24384 * 1 2 3 30 30 H 1.08995 * 109.46978 * 182.24496 * 1 2 3 31 31 H 1.09003 * 109.20289 * 46.69240 * 4 2 1 32 32 H 1.08993 * 109.16795 * 287.37650 * 4 2 1 33 33 H 1.08002 * 119.71281 * 359.40950 * 6 5 4 34 34 H 1.07996 * 120.16237 * 180.21400 * 9 7 6 35 35 H 1.07989 * 119.73230 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46702 * 299.80839 * 14 12 11 37 37 H 1.08995 * 109.47230 * 59.80830 * 14 12 11 38 38 H 1.09001 * 109.47173 * 179.81260 * 14 12 11 39 39 H 1.09000 * 109.47344 * 299.99953 * 18 16 15 40 40 H 1.09001 * 109.46983 * 59.99925 * 18 16 15 41 41 H 1.09007 * 109.47300 * 300.00009 * 19 18 16 42 42 H 1.09001 * 109.46987 * 60.00195 * 19 18 16 43 43 H 0.97003 * 120.00198 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0468 -0.7355 1.2355 5 6 3.5189 -1.0274 1.1091 6 6 4.2229 -1.3028 2.2749 7 6 5.5731 -1.5904 2.2289 8 9 6.2507 -1.8472 3.3692 9 6 6.2311 -1.6088 1.0105 10 6 5.5330 -1.3353 -0.1471 11 6 4.1771 -1.0395 -0.1003 12 6 3.4793 -0.7327 -1.4016 13 1 3.7267 -1.4999 -2.1354 14 6 3.9413 0.6320 -1.9167 15 7 2.0281 -0.7090 -1.1903 16 6 1.1844 -1.3115 -2.0514 17 8 -0.0142 -1.1971 -1.9062 18 6 1.7304 -2.1275 -3.1948 19 6 0.5708 -2.6979 -4.0137 20 6 1.1168 -3.5144 -5.1567 21 1 2.1841 -3.6166 -5.2858 22 6 0.2537 -4.1317 -6.0370 23 7 -1.0461 -4.0077 -5.8795 24 14 0.9305 -5.1432 -7.4541 25 1 2.4147 -5.1255 -7.4104 26 1 0.4489 -6.5430 -7.3374 27 1 0.4659 -4.5655 -8.7409 28 1 -0.3634 0.5483 0.8692 29 1 -0.3633 0.4786 -0.9094 30 1 -0.3633 -1.0268 0.0403 31 1 1.5036 -1.6739 1.3474 32 1 1.8785 -0.1167 2.1168 33 1 3.7100 -1.2915 3.2253 34 1 7.2860 -1.8363 0.9669 35 1 6.0454 -1.3499 -1.0977 36 1 3.6930 1.3999 -1.1839 37 1 5.0197 0.6150 -2.0739 38 1 3.4401 0.8534 -2.8590 39 1 2.3479 -1.4937 -3.8312 40 1 2.3340 -2.9456 -2.8016 41 1 -0.0464 -3.3319 -3.3771 42 1 -0.0331 -1.8801 -4.4069 43 1 -1.6533 -4.4417 -6.4991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334388248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:23 Heat of formation + Delta-G solvation = -76.428513 kcal Electronic energy + Delta-G solvation = -25238.033530 eV Core-core repulsion = 21582.565456 eV Total energy + Delta-G solvation = -3655.468074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.88920 -41.92114 -40.07916 -37.30428 -35.83354 -35.11966 -33.02635 -32.56428 -31.51361 -29.71313 -27.70381 -27.55693 -25.02569 -24.12578 -23.24090 -22.78520 -21.68431 -19.50666 -18.59724 -18.27558 -17.79627 -17.58949 -16.82995 -16.62170 -16.51380 -16.36096 -16.12026 -15.54559 -15.12363 -14.79460 -14.55650 -14.35274 -14.26119 -14.18702 -13.89148 -13.65792 -13.40464 -13.30427 -13.10306 -12.84559 -12.81942 -12.65378 -12.53596 -12.42190 -12.20129 -12.01352 -11.88659 -11.75467 -11.53396 -11.23454 -10.56480 -10.04531 -9.89254 -9.62932 -9.45887 -8.16919 -6.30544 0.12286 0.23561 1.42961 1.44063 1.57226 1.71806 1.95766 2.43741 2.53246 3.16404 3.21478 3.45817 3.60584 3.76255 3.84798 3.98181 4.05794 4.19703 4.21770 4.28180 4.36412 4.45762 4.51155 4.54113 4.62779 4.72394 4.78748 4.87480 4.89435 4.94034 5.03216 5.07265 5.14035 5.18441 5.24925 5.35648 5.39949 5.51284 5.51927 5.64763 5.72121 5.86670 5.90840 6.19261 6.46122 6.88231 7.31777 7.39874 8.95804 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.003594 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.082207 B = 7789.749939 C = 8682.226312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.090 4.090 5 C -0.048 4.048 6 C -0.159 4.159 7 C 0.082 3.918 8 F -0.149 7.149 9 C -0.153 4.153 10 C -0.076 4.076 11 C -0.104 4.104 12 C 0.170 3.830 13 H 0.111 0.889 14 C -0.153 4.153 15 N -0.609 5.609 16 C 0.516 3.484 17 O -0.567 6.567 18 C -0.119 4.119 19 C 0.046 3.954 20 C -0.540 4.540 21 H 0.075 0.925 22 C -0.006 4.006 23 N -0.937 5.937 24 Si 0.971 3.029 25 H -0.252 1.252 26 H -0.282 1.282 27 H -0.280 1.280 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.095 0.905 41 H -0.020 1.020 42 H -0.017 1.017 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.169 9.756 15.877 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.128 4.128 5 C -0.048 4.048 6 C -0.177 4.177 7 C 0.063 3.937 8 F -0.127 7.127 9 C -0.172 4.172 10 C -0.094 4.094 11 C -0.105 4.105 12 C 0.067 3.933 13 H 0.128 0.872 14 C -0.211 4.211 15 N -0.343 5.343 16 C 0.306 3.694 17 O -0.446 6.446 18 C -0.159 4.159 19 C 0.008 3.992 20 C -0.578 4.578 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.175 1.175 26 H -0.208 1.208 27 H -0.206 1.206 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.113 0.887 41 H -0.001 1.001 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.390 9.764 15.930 24.854 hybrid contribution -0.367 -0.760 -0.415 0.940 sum 16.022 9.004 15.515 24.052 Atomic orbital electron populations 1.21985 0.93442 1.01927 1.01143 1.21330 0.94984 0.96035 0.83681 0.88767 1.20941 0.90981 1.01735 0.99125 1.19408 0.95647 0.97897 0.91859 1.21236 0.92829 1.03730 0.99941 1.17828 0.90801 1.02655 0.82417 1.91482 1.80143 1.91863 1.49241 1.21323 1.02106 1.03134 0.90608 1.21183 0.92398 0.96381 0.99439 1.19919 0.94872 1.01687 0.94025 1.20276 0.77916 1.00480 0.94591 0.87169 1.22160 1.03135 0.94623 1.01215 1.48305 1.06823 1.54244 1.24914 1.21172 0.86185 0.78697 0.83321 1.90716 1.17329 1.62300 1.74222 1.21673 1.00301 0.99209 0.94683 1.18657 0.92781 0.94155 0.93561 1.21733 0.93851 1.30824 1.11417 0.90678 1.26107 0.94990 0.98002 1.01242 1.70180 1.03535 1.45274 1.38745 0.85309 0.79357 0.77743 0.78061 1.17518 1.20786 1.20629 0.91127 0.93466 0.93824 0.90981 0.86940 0.83728 0.82565 0.82016 0.91947 0.88559 0.92302 0.88079 0.88692 1.00113 0.99817 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 7.59 71.98 0.55 -3.11 16 2 C 0.14 3.38 3.33 44.78 0.15 3.52 16 3 H 0.09 1.88 7.35 -2.39 -0.02 1.86 16 4 C -0.09 -1.77 5.21 29.75 0.15 -1.62 16 5 C -0.05 -0.93 5.76 -19.85 -0.11 -1.05 16 6 C -0.16 -2.88 9.57 22.41 0.21 -2.67 16 7 C 0.08 1.52 7.30 22.30 0.16 1.68 16 8 F -0.15 -3.00 17.27 44.97 0.78 -2.22 16 9 C -0.15 -2.33 10.04 22.25 0.22 -2.10 16 10 C -0.08 -1.11 9.25 22.34 0.21 -0.91 16 11 C -0.10 -1.95 5.17 -19.81 -0.10 -2.05 16 12 C 0.17 3.52 2.70 44.25 0.12 3.64 16 13 H 0.11 2.26 6.17 -2.39 -0.01 2.24 16 14 C -0.15 -2.49 9.25 71.98 0.67 -1.82 16 15 N -0.61 -16.95 2.58 -776.22 -2.00 -18.95 16 16 C 0.52 19.78 7.63 87.66 0.67 20.44 16 17 O -0.57 -26.47 11.55 -3.02 -0.03 -26.51 16 18 C -0.12 -4.77 4.03 29.85 0.12 -4.65 16 19 C 0.05 2.55 4.26 29.85 0.13 2.68 16 20 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 21 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 22 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 23 N -0.94 -59.28 13.29 21.45 0.28 -58.99 16 24 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 25 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.62 6.79 -2.39 -0.02 1.60 16 30 H 0.04 1.51 6.79 -2.39 -0.02 1.49 16 31 H 0.07 1.65 8.06 -2.39 -0.02 1.63 16 32 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.14 2.18 8.05 -2.91 -0.02 2.16 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.16 1.49 8.05 -2.92 -0.02 1.46 16 36 H 0.06 0.99 7.36 -2.38 -0.02 0.97 16 37 H 0.10 1.06 7.90 -2.39 -0.02 1.04 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 3.55 7.93 -2.39 -0.02 3.53 16 40 H 0.09 3.46 7.79 -2.39 -0.02 3.44 16 41 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 42 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 43 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -74.62 348.14 5.89 -68.72 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.00 Total: 10.08 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 3.84 Total: -18.18 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.72 Total: -77.95 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.03 Total: -26.51 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -74.62 5.89 -68.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334388248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.705 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds