Wall clock time and date at job start Tue Mar 31 2020 09:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.76573 * 2 1 4 4 C 1.52786 * 109.77511 * 239.25788 * 2 1 3 5 5 C 1.50593 * 110.86147 * 192.85635 * 4 2 1 6 6 C 1.38953 * 117.60283 * 199.96871 * 5 4 2 7 7 C 1.38127 * 120.56614 * 180.67070 * 6 5 4 8 8 F 1.35100 * 120.11392 * 180.15272 * 7 6 5 9 9 C 1.38490 * 119.77086 * 0.17176 * 7 6 5 10 10 C 1.37925 * 119.69031 * 359.71356 * 9 7 6 11 11 C 1.37688 * 122.86113 * 20.33626 * 5 4 2 12 12 C 1.50822 * 122.32596 * 358.26030 * 11 5 4 13 13 H 1.09005 * 109.40025 * 131.79069 * 12 11 5 14 14 C 1.52997 * 109.43348 * 251.68455 * 12 11 5 15 15 N 1.46677 * 109.68414 * 11.75153 * 12 11 5 16 16 C 1.34771 * 121.33182 * 135.53327 * 15 12 11 17 17 O 1.21287 * 120.00217 * 180.02562 * 16 15 12 18 18 C 1.50705 * 119.99960 * 0.02562 * 16 15 12 19 19 C 1.53001 * 109.47038 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46862 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00064 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99986 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99816 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00211 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47068 * 89.99627 * 24 22 20 26 26 H 1.48494 * 109.47355 * 209.99538 * 24 22 20 27 27 H 1.48495 * 109.46814 * 329.99986 * 24 22 20 28 28 H 1.09007 * 109.47393 * 180.73960 * 1 2 3 29 29 H 1.09003 * 109.47235 * 300.73965 * 1 2 3 30 30 H 1.09001 * 109.47323 * 60.74167 * 1 2 3 31 31 H 1.09003 * 109.19708 * 72.49416 * 4 2 1 32 32 H 1.09010 * 109.15709 * 313.18773 * 4 2 1 33 33 H 1.07996 * 119.71277 * 0.69421 * 6 5 4 34 34 H 1.08005 * 120.15542 * 179.69546 * 9 7 6 35 35 H 1.07995 * 119.72600 * 179.64086 * 10 9 7 36 36 H 1.09003 * 109.47135 * 180.21606 * 14 12 11 37 37 H 1.08993 * 109.46943 * 300.21065 * 14 12 11 38 38 H 1.08996 * 109.46977 * 60.21617 * 14 12 11 39 39 H 1.08992 * 109.46920 * 299.99773 * 18 16 15 40 40 H 1.09003 * 109.46988 * 60.00046 * 18 16 15 41 41 H 1.09009 * 109.46946 * 299.99795 * 19 18 16 42 42 H 1.08996 * 109.47066 * 59.99785 * 19 18 16 43 43 H 0.97003 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8985 1.0257 0.0000 4 6 2.0469 -0.7349 -1.2357 5 6 3.5193 -1.0248 -1.1105 6 6 4.2247 -1.2910 -2.2777 7 6 5.5750 -1.5783 -2.2324 8 9 6.2525 -1.8327 -3.3732 9 6 6.2318 -1.6050 -1.0134 10 6 5.5328 -1.3384 0.1453 11 6 4.1771 -1.0421 0.0990 12 6 3.4804 -0.7330 1.4005 13 1 3.7277 -1.4999 2.1346 14 6 3.9435 0.6317 1.9142 15 7 2.0290 -0.7085 1.1903 16 6 1.1858 -1.3109 2.0519 17 8 -0.0103 -1.2761 1.8544 18 6 1.7293 -2.0279 3.2610 19 6 0.5708 -2.6193 4.0667 20 6 1.1143 -3.3357 5.2760 21 1 2.1793 -3.3664 5.4521 22 6 0.2517 -3.9528 6.1571 23 7 -1.0452 -3.9158 5.9424 24 14 0.9253 -4.8414 7.6558 25 1 1.0148 -3.8929 8.7949 26 1 0.0201 -5.9623 8.0151 27 1 2.2766 -5.3751 7.3489 28 1 -0.3634 -1.0276 0.0133 29 1 -0.3634 0.5253 0.8833 30 1 -0.3634 0.5023 -0.8966 31 1 1.8767 -0.1171 -2.1175 32 1 1.5047 -1.6742 -1.3462 33 1 3.7127 -1.2728 -3.2284 34 1 7.2865 -1.8337 -0.9703 35 1 6.0431 -1.3648 1.0967 36 1 3.4432 0.8541 2.8568 37 1 5.0220 0.6141 2.0707 38 1 3.6952 1.3992 1.1812 39 1 2.3943 -2.8293 2.9397 40 1 2.2825 -1.3238 3.8827 41 1 -0.0947 -1.8180 4.3880 42 1 0.0180 -3.3234 3.4448 43 1 -1.6520 -4.3503 6.5620 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334388249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:27 Heat of formation + Delta-G solvation = -58.386655 kcal Electronic energy + Delta-G solvation = -25231.235973 eV Core-core repulsion = 21576.550253 eV Total energy + Delta-G solvation = -3654.685720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.09773 -40.86834 -38.95196 -36.15804 -34.56313 -33.37734 -31.66425 -31.35174 -30.25605 -28.81394 -26.67995 -25.76842 -24.00508 -22.74583 -22.43954 -21.52273 -20.37016 -18.20671 -17.48674 -17.06898 -16.62788 -16.27194 -15.83138 -15.56342 -15.21527 -15.18848 -14.45930 -14.42841 -14.06383 -13.69980 -13.62319 -13.32106 -13.20207 -12.86327 -12.74795 -12.38090 -12.13125 -11.96996 -11.92926 -11.70380 -11.67888 -11.27913 -11.14662 -11.06822 -10.92893 -10.84752 -10.59497 -9.96161 -9.58286 -9.14867 -9.11318 -8.73377 -8.55902 -8.42577 -8.32041 -5.97002 -4.01303 0.89460 0.95880 3.11716 3.17582 3.28164 3.32490 3.38944 3.41293 3.98565 4.32813 4.38608 4.46205 4.57216 4.80800 4.86304 4.97557 4.98735 5.13904 5.17838 5.23734 5.38138 5.39021 5.47936 5.57424 5.66844 5.69658 5.73857 5.82191 5.89288 5.90165 6.00466 6.06567 6.17163 6.18299 6.27075 6.33907 6.53416 6.64843 6.84900 6.89924 7.73239 7.74749 7.85159 8.05941 8.37733 8.73586 9.06993 9.62302 11.13886 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.003559 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.559071 B = 7864.444713 C = 8741.663643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.144 3.856 3 H 0.072 0.928 4 C -0.097 4.097 5 C -0.035 4.035 6 C -0.157 4.157 7 C 0.097 3.903 8 F -0.142 7.142 9 C -0.156 4.156 10 C -0.080 4.080 11 C -0.095 4.095 12 C 0.177 3.823 13 H 0.109 0.891 14 C -0.159 4.159 15 N -0.618 5.618 16 C 0.518 3.482 17 O -0.522 6.522 18 C -0.131 4.131 19 C 0.039 3.961 20 C -0.527 4.527 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.889 5.889 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.697 9.222 -15.780 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 H 0.089 0.911 4 C -0.135 4.135 5 C -0.035 4.035 6 C -0.176 4.176 7 C 0.077 3.923 8 F -0.121 7.121 9 C -0.175 4.175 10 C -0.099 4.099 11 C -0.096 4.096 12 C 0.072 3.928 13 H 0.127 0.873 14 C -0.217 4.217 15 N -0.354 5.354 16 C 0.309 3.691 17 O -0.397 6.397 18 C -0.171 4.171 19 C 0.001 3.999 20 C -0.565 4.565 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.850 9.155 -15.833 22.352 hybrid contribution 0.711 -0.591 0.486 1.044 sum 13.561 8.564 -15.348 22.199 Atomic orbital electron populations 1.22207 0.91964 1.04644 1.00693 1.21149 0.96173 0.94783 0.83778 0.91050 1.21010 0.90986 1.02226 0.99242 1.19382 0.95783 0.96945 0.91394 1.21141 0.92700 1.04115 0.99597 1.17595 0.90518 1.02092 0.82054 1.91494 1.80065 1.91764 1.48774 1.21051 1.01057 1.04231 0.91173 1.20937 0.93124 0.97508 0.98310 1.19901 0.94072 1.00910 0.94736 1.20010 0.79966 0.99067 0.93716 0.87285 1.22180 1.01578 0.96028 1.01886 1.48390 1.05769 1.55804 1.25436 1.21467 0.86417 0.77380 0.83855 1.90703 1.15572 1.59181 1.74233 1.21939 1.02690 0.99128 0.93344 1.18892 0.91450 0.96105 0.93447 1.21210 0.93050 1.34229 1.08022 0.92665 1.25016 0.94834 0.96412 0.98064 1.69995 1.01862 1.43976 1.36965 0.86607 0.78808 0.79421 0.83214 1.20675 1.21229 1.19889 0.89782 0.91269 0.94165 0.89657 0.89465 0.84870 0.84644 0.84588 0.91209 0.91285 0.92258 0.90433 0.90339 0.95827 0.95859 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.60 37.15 0.28 -1.64 16 2 C 0.14 1.79 3.33 -67.64 -0.22 1.56 16 3 H 0.07 0.79 7.35 -51.93 -0.38 0.41 16 4 C -0.10 -1.03 5.21 -28.04 -0.15 -1.18 16 5 C -0.03 -0.38 5.76 -104.61 -0.60 -0.98 16 6 C -0.16 -1.60 9.57 -39.36 -0.38 -1.97 16 7 C 0.10 1.01 7.30 -39.53 -0.29 0.72 16 8 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 9 C -0.16 -1.44 10.04 -39.60 -0.40 -1.84 16 10 C -0.08 -0.74 9.25 -39.47 -0.37 -1.10 16 11 C -0.10 -1.02 5.17 -104.54 -0.54 -1.56 16 12 C 0.18 2.03 2.69 -68.93 -0.19 1.84 16 13 H 0.11 1.26 6.19 -51.93 -0.32 0.94 16 14 C -0.16 -1.51 9.25 37.16 0.34 -1.17 16 15 N -0.62 -8.79 2.58 -159.28 -0.41 -9.20 16 16 C 0.52 9.63 7.64 -10.99 -0.08 9.55 16 17 O -0.52 -11.39 11.55 5.55 0.06 -11.32 16 18 C -0.13 -2.60 4.06 -27.88 -0.11 -2.71 16 19 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 20 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 21 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 24 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.08 1.39 6.41 -51.92 -0.33 1.06 16 29 H 0.07 1.11 7.17 -51.93 -0.37 0.74 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.72 8.10 -51.93 -0.42 0.29 16 32 H 0.09 1.02 8.07 -51.92 -0.42 0.60 16 33 H 0.13 1.14 8.05 -52.49 -0.42 0.72 16 34 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.14 0.94 8.05 -52.49 -0.42 0.52 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 38 H 0.06 0.56 7.36 -51.93 -0.38 0.17 16 39 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 40 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 41 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 42 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -32.41 348.19 -8.93 -41.34 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.35 Total: -1.51 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -3.23 Total: -13.04 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.33 Total: -35.62 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.06 Total: -11.32 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.41 -8.93 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334388249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.049 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds