Wall clock time and date at job start Tue Mar 31 2020 09:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.76573 * 2 1 4 4 C 1.52786 * 109.77511 * 239.25788 * 2 1 3 5 5 C 1.50593 * 110.86147 * 192.85635 * 4 2 1 6 6 C 1.38953 * 117.60283 * 199.96871 * 5 4 2 7 7 C 1.38127 * 120.56614 * 180.67070 * 6 5 4 8 8 F 1.35100 * 120.11392 * 180.15272 * 7 6 5 9 9 C 1.38490 * 119.77086 * 0.17176 * 7 6 5 10 10 C 1.37925 * 119.69031 * 359.71356 * 9 7 6 11 11 C 1.37688 * 122.86113 * 20.33626 * 5 4 2 12 12 C 1.50822 * 122.32596 * 358.26030 * 11 5 4 13 13 H 1.09005 * 109.40025 * 131.79069 * 12 11 5 14 14 C 1.52997 * 109.43348 * 251.68455 * 12 11 5 15 15 N 1.46677 * 109.68414 * 11.75153 * 12 11 5 16 16 C 1.34771 * 121.33182 * 135.53327 * 15 12 11 17 17 O 1.21287 * 120.00217 * 180.02562 * 16 15 12 18 18 C 1.50705 * 119.99960 * 0.02562 * 16 15 12 19 19 C 1.53001 * 109.47038 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46862 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00064 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99986 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99816 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00211 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47068 * 89.99627 * 24 22 20 26 26 H 1.48494 * 109.47355 * 209.99538 * 24 22 20 27 27 H 1.48495 * 109.46814 * 329.99986 * 24 22 20 28 28 H 1.09007 * 109.47393 * 180.73960 * 1 2 3 29 29 H 1.09003 * 109.47235 * 300.73965 * 1 2 3 30 30 H 1.09001 * 109.47323 * 60.74167 * 1 2 3 31 31 H 1.09003 * 109.19708 * 72.49416 * 4 2 1 32 32 H 1.09010 * 109.15709 * 313.18773 * 4 2 1 33 33 H 1.07996 * 119.71277 * 0.69421 * 6 5 4 34 34 H 1.08005 * 120.15542 * 179.69546 * 9 7 6 35 35 H 1.07995 * 119.72600 * 179.64086 * 10 9 7 36 36 H 1.09003 * 109.47135 * 180.21606 * 14 12 11 37 37 H 1.08993 * 109.46943 * 300.21065 * 14 12 11 38 38 H 1.08996 * 109.46977 * 60.21617 * 14 12 11 39 39 H 1.08992 * 109.46920 * 299.99773 * 18 16 15 40 40 H 1.09003 * 109.46988 * 60.00046 * 18 16 15 41 41 H 1.09009 * 109.46946 * 299.99795 * 19 18 16 42 42 H 1.08996 * 109.47066 * 59.99785 * 19 18 16 43 43 H 0.97003 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8985 1.0257 0.0000 4 6 2.0469 -0.7349 -1.2357 5 6 3.5193 -1.0248 -1.1105 6 6 4.2247 -1.2910 -2.2777 7 6 5.5750 -1.5783 -2.2324 8 9 6.2525 -1.8327 -3.3732 9 6 6.2318 -1.6050 -1.0134 10 6 5.5328 -1.3384 0.1453 11 6 4.1771 -1.0421 0.0990 12 6 3.4804 -0.7330 1.4005 13 1 3.7277 -1.4999 2.1346 14 6 3.9435 0.6317 1.9142 15 7 2.0290 -0.7085 1.1903 16 6 1.1858 -1.3109 2.0519 17 8 -0.0103 -1.2761 1.8544 18 6 1.7293 -2.0279 3.2610 19 6 0.5708 -2.6193 4.0667 20 6 1.1143 -3.3357 5.2760 21 1 2.1793 -3.3664 5.4521 22 6 0.2517 -3.9528 6.1571 23 7 -1.0452 -3.9158 5.9424 24 14 0.9253 -4.8414 7.6558 25 1 1.0148 -3.8929 8.7949 26 1 0.0201 -5.9623 8.0151 27 1 2.2766 -5.3751 7.3489 28 1 -0.3634 -1.0276 0.0133 29 1 -0.3634 0.5253 0.8833 30 1 -0.3634 0.5023 -0.8966 31 1 1.8767 -0.1171 -2.1175 32 1 1.5047 -1.6742 -1.3462 33 1 3.7127 -1.2728 -3.2284 34 1 7.2865 -1.8337 -0.9703 35 1 6.0431 -1.3648 1.0967 36 1 3.4432 0.8541 2.8568 37 1 5.0220 0.6141 2.0707 38 1 3.6952 1.3992 1.1812 39 1 2.3943 -2.8293 2.9397 40 1 2.2825 -1.3238 3.8827 41 1 -0.0947 -1.8180 4.3880 42 1 0.0180 -3.3234 3.4448 43 1 -1.6520 -4.3503 6.5620 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334388249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:26 Heat of formation + Delta-G solvation = -75.879513 kcal Electronic energy + Delta-G solvation = -25231.994520 eV Core-core repulsion = 21576.550253 eV Total energy + Delta-G solvation = -3655.444267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.89227 -41.92312 -40.07891 -37.30114 -35.83911 -35.11701 -33.02075 -32.56624 -31.51403 -29.71025 -27.70426 -27.55642 -25.02617 -24.11941 -23.24269 -22.78993 -21.68731 -19.52380 -18.59363 -18.28089 -17.78686 -17.56107 -16.83731 -16.62472 -16.51951 -16.38042 -16.11308 -15.51714 -15.10859 -14.81823 -14.57362 -14.34734 -14.27034 -14.17726 -13.88982 -13.65973 -13.39908 -13.31702 -13.10413 -12.82719 -12.81222 -12.66028 -12.53884 -12.43747 -12.18289 -12.03365 -11.86619 -11.75019 -11.53212 -11.25464 -10.55255 -10.02242 -9.89522 -9.63106 -9.46327 -8.16645 -6.30363 0.12070 0.23324 1.42973 1.45487 1.56283 1.72346 1.95598 2.43974 2.52992 3.16562 3.21390 3.45554 3.60708 3.76186 3.84731 3.98143 4.05440 4.19471 4.21873 4.28274 4.36305 4.46108 4.50796 4.54808 4.62755 4.72795 4.79098 4.87213 4.89814 4.93651 5.03239 5.07446 5.14054 5.18159 5.24801 5.35768 5.40049 5.51254 5.51874 5.64994 5.72972 5.86798 5.90680 6.19383 6.46179 6.88250 7.32270 7.40020 8.95890 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.003559 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.559071 B = 7864.444713 C = 8741.663643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.090 4.090 5 C -0.048 4.048 6 C -0.159 4.159 7 C 0.082 3.918 8 F -0.148 7.148 9 C -0.153 4.153 10 C -0.076 4.076 11 C -0.104 4.104 12 C 0.170 3.830 13 H 0.110 0.890 14 C -0.153 4.153 15 N -0.608 5.608 16 C 0.515 3.485 17 O -0.567 6.567 18 C -0.119 4.119 19 C 0.046 3.954 20 C -0.541 4.541 21 H 0.075 0.925 22 C -0.006 4.006 23 N -0.937 5.937 24 Si 0.972 3.028 25 H -0.271 1.271 26 H -0.287 1.287 27 H -0.255 1.255 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.101 0.899 41 H -0.017 1.017 42 H -0.019 1.019 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.160 9.668 -15.904 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.128 4.128 5 C -0.048 4.048 6 C -0.177 4.177 7 C 0.063 3.937 8 F -0.127 7.127 9 C -0.172 4.172 10 C -0.094 4.094 11 C -0.105 4.105 12 C 0.067 3.933 13 H 0.128 0.872 14 C -0.211 4.211 15 N -0.342 5.342 16 C 0.306 3.694 17 O -0.446 6.446 18 C -0.158 4.158 19 C 0.009 3.991 20 C -0.579 4.579 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.197 1.197 26 H -0.213 1.213 27 H -0.179 1.179 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.001 0.999 42 H -0.001 1.001 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.380 9.625 -15.989 24.831 hybrid contribution -0.357 -0.697 0.443 0.900 sum 16.023 8.929 -15.546 24.044 Atomic orbital electron populations 1.22018 0.93465 1.02495 1.00768 1.21325 0.94991 0.95991 0.83718 0.88793 1.20932 0.90959 1.01750 0.99125 1.19411 0.95655 0.97912 0.91856 1.21240 0.92806 1.03768 0.99919 1.17828 0.90796 1.02681 0.82394 1.91480 1.80155 1.91891 1.49196 1.21325 1.02121 1.03134 0.90587 1.21178 0.92373 0.96404 0.99445 1.19917 0.94879 1.01696 0.94035 1.20277 0.77908 1.00497 0.94582 0.87199 1.22157 1.03137 0.94580 1.01261 1.48313 1.06828 1.54213 1.24858 1.21187 0.86154 0.77778 0.84297 1.90713 1.17486 1.61092 1.75340 1.21678 1.00284 1.00151 0.93727 1.18653 0.92794 0.94044 0.93639 1.21706 0.94079 1.33881 1.08263 0.90664 1.26111 0.94983 0.97377 1.01866 1.70177 1.03701 1.45304 1.38556 0.85353 0.78644 0.77869 0.78592 1.19671 1.21321 1.17872 0.93021 0.94036 0.91137 0.86952 0.90999 0.83722 0.82553 0.82010 0.92204 0.88587 0.91957 0.88623 0.88080 0.99876 1.00094 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 7.60 71.98 0.55 -3.19 16 2 C 0.14 3.38 3.33 44.78 0.15 3.53 16 3 H 0.09 1.87 7.35 -2.39 -0.02 1.85 16 4 C -0.09 -1.78 5.21 29.74 0.15 -1.62 16 5 C -0.05 -0.94 5.76 -19.86 -0.11 -1.05 16 6 C -0.16 -2.88 9.57 22.41 0.21 -2.67 16 7 C 0.08 1.52 7.30 22.30 0.16 1.68 16 8 F -0.15 -2.99 17.27 44.97 0.78 -2.22 16 9 C -0.15 -2.33 10.04 22.26 0.22 -2.10 16 10 C -0.08 -1.11 9.25 22.34 0.21 -0.91 16 11 C -0.10 -1.96 5.17 -19.81 -0.10 -2.06 16 12 C 0.17 3.52 2.69 44.25 0.12 3.64 16 13 H 0.11 2.25 6.19 -2.38 -0.01 2.24 16 14 C -0.15 -2.48 9.25 71.98 0.67 -1.81 16 15 N -0.61 -16.94 2.58 -776.22 -2.00 -18.94 16 16 C 0.52 19.76 7.64 87.66 0.67 20.43 16 17 O -0.57 -26.51 11.55 -3.05 -0.04 -26.54 16 18 C -0.12 -4.75 4.06 29.85 0.12 -4.63 16 19 C 0.05 2.56 4.26 29.85 0.13 2.69 16 20 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 21 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 22 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 23 N -0.94 -59.31 13.29 21.45 0.28 -59.02 16 24 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 28 H 0.05 1.82 6.41 -2.38 -0.02 1.81 16 29 H 0.04 1.40 7.17 -2.39 -0.02 1.38 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 32 H 0.07 1.65 8.07 -2.38 -0.02 1.64 16 33 H 0.14 2.18 8.05 -2.91 -0.02 2.16 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.16 1.49 8.05 -2.91 -0.02 1.47 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.05 7.90 -2.39 -0.02 1.04 16 38 H 0.06 0.98 7.36 -2.39 -0.02 0.96 16 39 H 0.10 3.45 7.58 -2.39 -0.02 3.44 16 40 H 0.10 3.55 8.11 -2.39 -0.02 3.53 16 41 H -0.02 -1.08 8.10 -2.38 -0.02 -1.09 16 42 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -74.61 348.19 5.89 -68.71 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.00 Total: 10.29 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.84 Total: -18.29 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -1.72 Total: -77.96 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -74.61 5.89 -68.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334388249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.167 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds