Wall clock time and date at job start Tue Mar 31 2020 09:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47602 * 2 1 4 4 C 1.50702 * 109.46827 * 119.99904 * 2 1 3 5 5 O 1.21275 * 120.00075 * 21.93338 * 4 2 1 6 6 N 1.34781 * 119.99811 * 201.93135 * 4 2 1 7 7 C 1.46925 * 120.63182 * 4.57265 * 6 4 2 8 8 C 1.53626 * 108.54102 * 126.37213 * 7 6 4 9 9 C 1.53039 * 109.24443 * 54.85370 * 8 7 6 10 10 C 1.50702 * 109.45025 * 178.49647 * 9 8 7 11 11 H 1.07992 * 119.99702 * 120.06315 * 10 9 8 12 12 C 1.37876 * 120.00043 * 300.06839 * 10 9 8 13 13 N 1.31510 * 119.99870 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00017 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47396 * 90.00514 * 14 12 10 16 16 H 1.48503 * 109.47090 * 210.00274 * 14 12 10 17 17 H 1.48502 * 109.47236 * 330.00261 * 14 12 10 18 18 C 1.53042 * 109.53919 * 298.51366 * 9 8 7 19 19 C 1.46928 * 120.62712 * 184.85737 * 6 4 2 20 20 C 1.50702 * 109.47272 * 239.99610 * 2 1 3 21 21 C 1.38265 * 119.98886 * 299.73431 * 20 2 1 22 22 C 1.38223 * 120.04706 * 179.72561 * 21 20 2 23 23 C 1.38222 * 120.02895 * 0.54080 * 22 21 20 24 24 C 1.38435 * 119.96901 * 359.73071 * 23 22 21 25 25 F 1.35107 * 120.01902 * 180.02562 * 24 23 22 26 26 C 1.38181 * 119.98130 * 120.00077 * 20 2 1 27 27 H 1.09000 * 109.47176 * 61.19126 * 1 2 3 28 28 H 1.08998 * 109.47584 * 301.19413 * 1 2 3 29 29 H 1.08996 * 109.47208 * 181.19069 * 1 2 3 30 30 H 1.09004 * 109.58777 * 246.20215 * 7 6 4 31 31 H 1.09004 * 109.58558 * 6.63171 * 7 6 4 32 32 H 1.09006 * 109.62851 * 294.86494 * 8 7 6 33 33 H 1.09004 * 109.43190 * 174.72957 * 8 7 6 34 34 H 1.09004 * 109.45277 * 58.53161 * 9 8 7 35 35 H 0.97005 * 120.00296 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.49721 * 301.40933 * 18 9 8 37 37 H 1.08997 * 109.49349 * 181.31171 * 18 9 8 38 38 H 1.09003 * 109.59066 * 353.37326 * 19 6 4 39 39 H 1.09001 * 109.58989 * 113.65873 * 19 6 4 40 40 H 1.07995 * 119.97281 * 359.97007 * 21 20 2 41 41 H 1.07997 * 119.98320 * 180.27022 * 22 21 20 42 42 H 1.08001 * 120.01050 * 179.70802 * 23 22 21 43 43 H 1.07998 * 120.01894 * 0.02562 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.3158 -1.4984 1.8107 6 7 3.2777 -0.4701 1.6862 7 6 4.1213 0.5538 1.0547 8 6 4.6101 1.5227 2.1421 9 6 5.3081 0.7285 3.2485 10 6 5.8221 1.6780 4.2999 11 1 5.4746 1.5946 5.3190 12 6 6.7359 2.6532 3.9606 13 7 7.1848 3.4814 4.8782 14 14 7.3373 2.7970 2.1980 15 1 6.4484 3.7181 1.4452 16 1 8.7234 3.3299 2.1898 17 1 7.3183 1.4573 1.5576 18 6 4.3140 -0.2463 3.8840 19 6 3.8198 -1.2313 2.8199 20 6 2.0323 -0.7105 -1.2304 21 6 1.7027 -2.0358 -1.4461 22 6 2.1581 -2.6870 -2.5771 23 6 2.9529 -2.0171 -3.4882 24 6 3.2882 -0.6918 -3.2703 25 9 4.0646 -0.0358 -4.1605 26 6 2.8267 -0.0386 -2.1398 27 1 -0.3633 0.4952 -0.9005 28 1 -0.3634 0.5322 0.8790 29 1 -0.3633 -1.0274 0.0214 30 1 4.9762 0.0776 0.5745 31 1 3.5393 1.0995 0.3119 32 1 3.7603 2.0613 2.5615 33 1 5.3123 2.2331 1.7057 34 1 6.1427 0.1706 2.8237 35 1 7.8279 4.1673 4.6397 36 1 3.4671 0.3090 4.2871 37 1 4.8056 -0.7949 4.6873 38 1 3.0390 -1.8640 3.2421 39 1 4.6490 -1.8519 2.4803 40 1 1.0857 -2.5614 -0.7324 41 1 1.8964 -3.7210 -2.7468 42 1 3.3125 -2.5276 -4.3694 43 1 3.0880 0.9952 -1.9687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335977128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:34 Heat of formation + Delta-G solvation = -61.142030 kcal Electronic energy + Delta-G solvation = -25590.152671 eV Core-core repulsion = 21935.347469 eV Total energy + Delta-G solvation = -3654.805202 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.07518 -40.56904 -38.95128 -37.18048 -34.32220 -33.51972 -31.50587 -30.93585 -30.62537 -29.54139 -26.73543 -24.88877 -23.14031 -23.06804 -22.62840 -21.71159 -19.80008 -18.55785 -17.62002 -17.21401 -16.73736 -16.40758 -16.23441 -15.80742 -15.53436 -15.32452 -14.70348 -14.22297 -13.83438 -13.79633 -13.63015 -13.31839 -13.18135 -12.89516 -12.65532 -12.50251 -12.30681 -12.25993 -12.09865 -11.93061 -11.82254 -11.43824 -11.12267 -11.00836 -10.75612 -10.22722 -10.21380 -9.81186 -9.70177 -9.36875 -9.18748 -9.09379 -8.85868 -8.60569 -8.23937 -6.13015 -4.12514 0.87744 0.94651 2.71485 3.14672 3.18689 3.29534 3.32862 3.37303 3.99067 4.33504 4.37654 4.45158 4.61322 4.77817 4.90455 4.93553 4.99878 5.14313 5.17306 5.32181 5.50094 5.55465 5.59809 5.64998 5.72606 5.79756 5.81369 5.82817 5.85685 5.94768 5.99895 6.11370 6.14424 6.23766 6.26005 6.57122 6.60295 6.63050 6.71619 6.84930 7.13794 7.43565 7.64318 7.70144 8.31609 8.46475 8.91491 9.48842 11.00383 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.004706 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.891881 B = 5948.363470 C = 7120.161555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 H 0.104 0.896 4 C 0.523 3.477 5 O -0.547 6.547 6 N -0.596 5.596 7 C 0.100 3.900 8 C -0.136 4.136 9 C 0.015 3.985 10 C -0.514 4.514 11 H 0.074 0.926 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.884 3.116 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.265 1.265 18 C -0.112 4.112 19 C 0.108 3.892 20 C -0.042 4.042 21 C -0.117 4.117 22 C -0.088 4.088 23 C -0.156 4.156 24 C 0.100 3.900 25 F -0.140 7.140 26 C -0.146 4.146 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 -9.403 -16.524 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 H 0.122 0.878 4 C 0.310 3.690 5 O -0.426 6.426 6 N -0.328 5.328 7 C -0.023 4.023 8 C -0.174 4.174 9 C -0.004 4.004 10 C -0.552 4.552 11 H 0.092 0.908 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.714 3.286 15 H -0.205 1.205 16 H -0.224 1.224 17 H -0.190 1.190 18 C -0.151 4.151 19 C -0.014 4.014 20 C -0.043 4.043 21 C -0.135 4.135 22 C -0.106 4.106 23 C -0.175 4.175 24 C 0.081 3.919 25 F -0.118 7.118 26 C -0.165 4.165 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.997 -9.642 -16.189 21.817 hybrid contribution 0.801 0.582 -1.134 1.506 sum -10.196 -9.060 -17.324 22.049 Atomic orbital electron populations 1.21643 0.91243 1.03512 1.02229 1.20415 0.98528 1.00296 0.90636 0.87762 1.20228 0.81300 0.82454 0.85030 1.90646 1.55615 1.37083 1.59211 1.48121 1.13983 1.37706 1.33020 1.22097 0.94182 0.89838 0.96143 1.22476 1.00774 0.97613 0.96498 1.19128 0.93357 0.94141 0.93787 1.21042 1.24363 1.13765 0.95981 0.90803 1.25037 0.95807 0.95388 0.97014 1.69895 1.31590 1.18934 1.33386 0.86898 0.77271 0.78679 0.85721 1.20523 1.22384 1.18976 1.21817 0.99590 0.96989 0.96660 1.21790 0.98312 0.94403 0.86858 1.19305 0.96385 0.94141 0.94447 1.21196 1.00367 0.94065 0.97849 1.21000 0.96268 1.00051 0.93325 1.21168 1.01349 0.93234 1.01727 1.17631 0.94230 0.91159 0.88916 1.91513 1.72498 1.81067 1.66732 1.21081 1.00077 1.01349 0.94019 0.91839 0.91574 0.91180 0.91681 0.90856 0.91502 0.92371 0.95409 0.92622 0.92230 0.91309 0.89777 0.92022 0.84803 0.84870 0.84783 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.51 37.15 0.32 -1.04 16 2 C -0.08 -0.92 2.10 -92.92 -0.20 -1.12 16 3 H 0.10 1.14 5.95 -51.93 -0.31 0.83 16 4 C 0.52 8.04 6.45 -10.98 -0.07 7.97 16 5 O -0.55 -9.71 15.45 5.56 0.09 -9.62 16 6 N -0.60 -9.65 2.97 -172.49 -0.51 -10.16 16 7 C 0.10 1.59 6.29 -3.49 -0.02 1.57 16 8 C -0.14 -2.68 4.86 -26.39 -0.13 -2.81 16 9 C 0.01 0.33 1.65 -91.73 -0.15 0.17 16 10 C -0.51 -13.89 9.14 -34.44 -0.31 -14.20 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 13 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 14 Si 0.88 20.97 24.38 -169.99 -4.14 16.82 16 15 H -0.28 -6.34 6.86 56.52 0.39 -5.95 16 16 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 18 C -0.11 -2.15 5.30 -26.61 -0.14 -2.29 16 19 C 0.11 1.81 6.44 -3.71 -0.02 1.78 16 20 C -0.04 -0.47 4.70 -104.63 -0.49 -0.96 16 21 C -0.12 -1.24 8.82 -39.58 -0.35 -1.59 16 22 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 23 C -0.16 -1.49 10.03 -39.51 -0.40 -1.88 16 24 C 0.10 1.11 7.30 -39.42 -0.29 0.82 16 25 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 26 C -0.15 -1.61 9.28 -39.51 -0.37 -1.97 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.77 7.15 -51.93 -0.37 0.39 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.97 4.81 -51.93 -0.25 0.72 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.22 3.24 -51.93 -0.17 1.05 16 34 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.13 1.44 7.60 -52.49 -0.40 1.04 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.14 1.35 7.72 -52.49 -0.40 0.94 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -30.80 340.94 -7.78 -38.59 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.05 Total: 2.00 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -3.12 Total: -14.93 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.26 Total: -36.37 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.80 -7.78 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335977128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.557 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds