Wall clock time and date at job start Tue Mar 31 2020 09:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47602 * 2 1 4 4 C 1.50702 * 109.46827 * 119.99904 * 2 1 3 5 5 O 1.21275 * 120.00075 * 21.93338 * 4 2 1 6 6 N 1.34781 * 119.99811 * 201.93135 * 4 2 1 7 7 C 1.46925 * 120.63182 * 4.57265 * 6 4 2 8 8 C 1.53626 * 108.54102 * 126.37213 * 7 6 4 9 9 C 1.53039 * 109.24443 * 54.85370 * 8 7 6 10 10 C 1.50702 * 109.45025 * 178.49647 * 9 8 7 11 11 H 1.07992 * 119.99702 * 120.06315 * 10 9 8 12 12 C 1.37876 * 120.00043 * 300.06839 * 10 9 8 13 13 N 1.31510 * 119.99870 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00017 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47396 * 90.00514 * 14 12 10 16 16 H 1.48503 * 109.47090 * 210.00274 * 14 12 10 17 17 H 1.48502 * 109.47236 * 330.00261 * 14 12 10 18 18 C 1.53042 * 109.53919 * 298.51366 * 9 8 7 19 19 C 1.46928 * 120.62712 * 184.85737 * 6 4 2 20 20 C 1.50702 * 109.47272 * 239.99610 * 2 1 3 21 21 C 1.38265 * 119.98886 * 299.73431 * 20 2 1 22 22 C 1.38223 * 120.04706 * 179.72561 * 21 20 2 23 23 C 1.38222 * 120.02895 * 0.54080 * 22 21 20 24 24 C 1.38435 * 119.96901 * 359.73071 * 23 22 21 25 25 F 1.35107 * 120.01902 * 180.02562 * 24 23 22 26 26 C 1.38181 * 119.98130 * 120.00077 * 20 2 1 27 27 H 1.09000 * 109.47176 * 61.19126 * 1 2 3 28 28 H 1.08998 * 109.47584 * 301.19413 * 1 2 3 29 29 H 1.08996 * 109.47208 * 181.19069 * 1 2 3 30 30 H 1.09004 * 109.58777 * 246.20215 * 7 6 4 31 31 H 1.09004 * 109.58558 * 6.63171 * 7 6 4 32 32 H 1.09006 * 109.62851 * 294.86494 * 8 7 6 33 33 H 1.09004 * 109.43190 * 174.72957 * 8 7 6 34 34 H 1.09004 * 109.45277 * 58.53161 * 9 8 7 35 35 H 0.97005 * 120.00296 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.49721 * 301.40933 * 18 9 8 37 37 H 1.08997 * 109.49349 * 181.31171 * 18 9 8 38 38 H 1.09003 * 109.59066 * 353.37326 * 19 6 4 39 39 H 1.09001 * 109.58989 * 113.65873 * 19 6 4 40 40 H 1.07995 * 119.97281 * 359.97007 * 21 20 2 41 41 H 1.07997 * 119.98320 * 180.27022 * 22 21 20 42 42 H 1.08001 * 120.01050 * 179.70802 * 23 22 21 43 43 H 1.07998 * 120.01894 * 0.02562 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.3158 -1.4984 1.8107 6 7 3.2777 -0.4701 1.6862 7 6 4.1213 0.5538 1.0547 8 6 4.6101 1.5227 2.1421 9 6 5.3081 0.7285 3.2485 10 6 5.8221 1.6780 4.2999 11 1 5.4746 1.5946 5.3190 12 6 6.7359 2.6532 3.9606 13 7 7.1848 3.4814 4.8782 14 14 7.3373 2.7970 2.1980 15 1 6.4484 3.7181 1.4452 16 1 8.7234 3.3299 2.1898 17 1 7.3183 1.4573 1.5576 18 6 4.3140 -0.2463 3.8840 19 6 3.8198 -1.2313 2.8199 20 6 2.0323 -0.7105 -1.2304 21 6 1.7027 -2.0358 -1.4461 22 6 2.1581 -2.6870 -2.5771 23 6 2.9529 -2.0171 -3.4882 24 6 3.2882 -0.6918 -3.2703 25 9 4.0646 -0.0358 -4.1605 26 6 2.8267 -0.0386 -2.1398 27 1 -0.3633 0.4952 -0.9005 28 1 -0.3634 0.5322 0.8790 29 1 -0.3633 -1.0274 0.0214 30 1 4.9762 0.0776 0.5745 31 1 3.5393 1.0995 0.3119 32 1 3.7603 2.0613 2.5615 33 1 5.3123 2.2331 1.7057 34 1 6.1427 0.1706 2.8237 35 1 7.8279 4.1673 4.6397 36 1 3.4671 0.3090 4.2871 37 1 4.8056 -0.7949 4.6873 38 1 3.0390 -1.8640 3.2421 39 1 4.6490 -1.8519 2.4803 40 1 1.0857 -2.5614 -0.7324 41 1 1.8964 -3.7210 -2.7468 42 1 3.3125 -2.5276 -4.3694 43 1 3.0880 0.9952 -1.9687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335977128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:34 Heat of formation + Delta-G solvation = -78.277983 kcal Electronic energy + Delta-G solvation = -25590.895742 eV Core-core repulsion = 21935.347469 eV Total energy + Delta-G solvation = -3655.548273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.89025 -41.67679 -39.90268 -38.59373 -35.42949 -35.09937 -33.33907 -32.05069 -31.67939 -30.33218 -28.40059 -26.02963 -24.42503 -24.25083 -23.70449 -22.86179 -21.22458 -19.79190 -18.93291 -18.57185 -18.11504 -17.27706 -17.13941 -16.75501 -16.58967 -16.55163 -16.31135 -15.30285 -15.18371 -15.10400 -14.80077 -14.57006 -14.30269 -14.29236 -13.96455 -13.77134 -13.66887 -13.41092 -13.04524 -12.97538 -12.82937 -12.70007 -12.36803 -12.26196 -12.10350 -11.94682 -11.73121 -11.51304 -11.20147 -11.03407 -10.83023 -10.64772 -9.94268 -9.66213 -9.60909 -8.28739 -6.33643 0.11254 0.20491 1.30461 1.38291 1.48128 1.55460 1.98910 2.33656 2.57188 3.06231 3.19975 3.46520 3.59935 3.72302 3.92636 4.06206 4.08683 4.13222 4.16912 4.18992 4.26828 4.28251 4.41964 4.43484 4.55349 4.71047 4.76130 4.80699 4.90183 4.92788 4.95042 5.02005 5.06850 5.10375 5.13347 5.23406 5.35089 5.38231 5.47515 5.56048 5.66824 5.72878 5.89433 6.31225 6.41783 6.73623 7.10818 7.31977 8.88426 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.004706 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.891881 B = 5948.363470 C = 7120.161555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 H 0.118 0.882 4 C 0.521 3.479 5 O -0.574 6.574 6 N -0.603 5.603 7 C 0.108 3.892 8 C -0.133 4.133 9 C 0.014 3.986 10 C -0.521 4.521 11 H 0.027 0.973 12 C 0.009 3.991 13 N -0.953 5.953 14 Si 0.948 3.052 15 H -0.258 1.258 16 H -0.303 1.303 17 H -0.238 1.238 18 C -0.106 4.106 19 C 0.116 3.884 20 C -0.050 4.050 21 C -0.125 4.125 22 C -0.084 4.084 23 C -0.153 4.153 24 C 0.083 3.917 25 F -0.148 7.148 26 C -0.150 4.150 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.354 -10.487 -20.104 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.136 0.864 4 C 0.310 3.690 5 O -0.454 6.454 6 N -0.334 5.334 7 C -0.014 4.014 8 C -0.172 4.172 9 C -0.005 4.005 10 C -0.559 4.559 11 H 0.045 0.955 12 C -0.188 4.188 13 N -0.594 5.594 14 Si 0.774 3.226 15 H -0.184 1.184 16 H -0.232 1.232 17 H -0.161 1.161 18 C -0.144 4.144 19 C -0.006 4.006 20 C -0.051 4.051 21 C -0.143 4.143 22 C -0.102 4.102 23 C -0.171 4.171 24 C 0.064 3.936 25 F -0.126 7.126 26 C -0.168 4.168 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.147 0.853 41 H 0.177 0.823 42 H 0.172 0.828 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.589 -10.745 -19.782 25.319 hybrid contribution 0.925 0.867 0.112 1.273 sum -10.663 -9.878 -19.670 24.458 Atomic orbital electron populations 1.21645 0.90405 1.03301 1.03034 1.20420 0.99228 1.00454 0.89162 0.86418 1.20850 0.80485 0.82011 0.85623 1.90635 1.56121 1.38333 1.60279 1.48197 1.14515 1.37820 1.32886 1.22073 0.95135 0.89133 0.95097 1.22319 1.00073 0.97984 0.96777 1.19088 0.94212 0.93787 0.93389 1.21377 1.24227 1.14806 0.95478 0.95451 1.25963 0.95994 0.94867 1.01969 1.70068 1.32914 1.20215 1.36184 0.85862 0.76339 0.80312 0.80112 1.18405 1.23153 1.16101 1.21691 0.98310 0.96938 0.97471 1.21631 0.98819 0.93677 0.86476 1.19217 0.97174 0.94416 0.94300 1.21298 1.00513 0.94098 0.98398 1.21275 0.95379 1.01158 0.92382 1.21450 1.00617 0.92753 1.02295 1.17853 0.94762 0.91869 0.89113 1.91494 1.72807 1.81323 1.67005 1.21178 0.99826 1.01920 0.93905 0.89610 0.92229 0.91874 0.90498 0.87587 0.92439 0.92928 0.95154 0.92632 0.93887 0.91669 0.89732 0.90434 0.85345 0.82323 0.82799 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.51 71.98 0.61 -1.76 16 2 C -0.07 -1.51 2.10 -12.29 -0.03 -1.53 16 3 H 0.12 2.13 5.95 -2.39 -0.01 2.12 16 4 C 0.52 14.90 6.45 87.66 0.57 15.47 16 5 O -0.57 -19.59 15.45 -3.01 -0.05 -19.64 16 6 N -0.60 -18.04 2.97 -818.04 -2.43 -20.47 16 7 C 0.11 3.06 6.29 86.51 0.54 3.60 16 8 C -0.13 -5.00 4.86 30.82 0.15 -4.85 16 9 C 0.01 0.61 1.65 -11.51 -0.02 0.60 16 10 C -0.52 -29.04 9.14 25.60 0.23 -28.80 16 11 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 12 C 0.01 0.49 5.45 84.65 0.46 0.95 16 13 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 14 Si 0.95 42.51 24.38 68.60 1.67 44.18 16 15 H -0.26 -10.72 6.86 99.48 0.68 -10.04 16 16 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 17 H -0.24 -9.54 6.53 99.48 0.65 -8.89 16 18 C -0.11 -4.06 5.30 30.67 0.16 -3.90 16 19 C 0.12 3.70 6.44 86.36 0.56 4.25 16 20 C -0.05 -0.98 4.70 -19.87 -0.09 -1.07 16 21 C -0.12 -2.31 8.82 22.27 0.20 -2.11 16 22 C -0.08 -1.24 10.04 22.26 0.22 -1.02 16 23 C -0.15 -2.38 10.03 22.31 0.22 -2.15 16 24 C 0.08 1.58 7.30 22.37 0.16 1.75 16 25 F -0.15 -3.13 17.27 44.97 0.78 -2.36 16 26 C -0.15 -2.77 9.28 22.31 0.21 -2.56 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.27 7.15 -2.39 -0.02 1.26 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.05 16 31 H 0.11 2.33 4.81 -2.39 -0.01 2.32 16 32 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.05 2.04 3.24 -2.39 -0.01 2.03 16 34 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 35 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.08 2.71 7.00 -2.39 -0.02 2.69 16 39 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.13 2.51 7.60 -2.91 -0.02 2.48 16 41 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.15 2.33 7.72 -2.91 -0.02 2.30 16 Total: -1.00 -68.76 340.94 5.37 -63.39 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.93 Total: 16.89 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.16 Total: -23.14 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.13 Total: -79.34 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.05 Total: -19.64 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.67 Total: 44.18 kcal Total: -68.76 5.37 -63.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335977128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.886 kcal (2) G-P(sol) polarization free energy of solvation -68.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds