Wall clock time and date at job start Tue Mar 31 2020 09:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46559 * 2 1 4 4 C 1.50702 * 109.47183 * 240.00573 * 2 1 3 5 5 H 1.07998 * 119.99906 * 239.99864 * 4 2 1 6 6 C 1.37878 * 120.00088 * 59.99424 * 4 2 1 7 7 N 1.31512 * 120.00258 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99845 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46989 * 269.99814 * 8 6 4 10 10 H 1.48492 * 109.47198 * 30.00230 * 8 6 4 11 11 H 1.48503 * 109.46818 * 150.00395 * 8 6 4 12 12 N 1.46491 * 109.47456 * 120.00090 * 2 1 3 13 13 C 1.46502 * 120.00060 * 58.03709 * 12 2 1 14 14 C 1.34776 * 120.00461 * 238.04003 * 12 2 1 15 15 O 1.21280 * 120.00193 * 184.46268 * 14 12 2 16 16 C 1.50701 * 119.99805 * 4.46553 * 14 12 2 17 17 C 1.52999 * 109.47208 * 288.15560 * 16 14 12 18 18 C 1.52995 * 109.47303 * 300.00081 * 17 16 14 19 19 C 1.53008 * 109.46963 * 299.99896 * 18 17 16 20 20 O 1.42898 * 109.47131 * 179.97438 * 19 18 17 21 21 C 1.42896 * 113.99639 * 90.00097 * 20 19 18 22 22 F 1.39902 * 109.47676 * 299.99716 * 21 20 19 23 23 F 1.39897 * 109.47468 * 59.99998 * 21 20 19 24 24 C 1.52999 * 109.47026 * 59.99934 * 19 18 17 25 25 C 1.52996 * 109.47407 * 168.15458 * 16 14 12 26 26 H 1.09001 * 109.47659 * 59.99813 * 1 2 3 27 27 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47331 * 299.99675 * 1 2 3 29 29 H 0.97000 * 120.00510 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47128 * 95.17184 * 13 12 2 31 31 H 1.08992 * 109.47327 * 215.17753 * 13 12 2 32 32 H 1.09003 * 109.46908 * 335.18186 * 13 12 2 33 33 H 1.09003 * 109.47225 * 48.15345 * 16 14 12 34 34 H 1.09003 * 109.47329 * 60.00031 * 17 16 14 35 35 H 1.08996 * 109.47302 * 179.97438 * 17 16 14 36 36 H 1.08994 * 109.47648 * 179.97438 * 18 17 16 37 37 H 1.09006 * 109.47013 * 59.99683 * 18 17 16 38 38 H 1.08996 * 109.47036 * 299.99825 * 19 18 17 39 39 H 1.09008 * 109.47163 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47628 * 180.02562 * 24 19 18 41 41 H 1.09006 * 109.47345 * 59.99972 * 24 19 18 42 42 H 1.08996 * 109.47266 * 179.97438 * 25 16 14 43 43 H 1.09007 * 109.46929 * 300.00239 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.6296 -0.5455 -4.4125 10 1 2.4859 -2.5659 -3.7121 11 1 1.3430 -0.9489 -5.1121 12 7 2.0184 -0.6906 1.1961 13 6 1.6294 -2.0800 1.4499 14 6 2.8255 -0.0478 2.0631 15 8 3.2951 -0.6428 3.0098 16 6 3.1445 1.4105 1.8562 17 6 4.0855 1.5619 0.6593 18 6 5.3790 0.7898 0.9265 19 6 6.0556 1.3469 2.1808 20 8 7.2634 0.6254 2.4308 21 6 8.4159 1.1843 1.7973 22 9 8.2244 1.2010 0.4115 23 9 8.6130 2.4910 2.2565 24 6 5.1146 1.1955 3.3777 25 6 3.8210 1.9676 3.1103 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7093 1.1620 -3.4844 30 1 2.4014 -2.7488 1.0693 31 1 1.5115 -2.2342 2.5224 32 1 0.6858 -2.2909 0.9465 33 1 2.2230 1.9606 1.6657 34 1 3.6036 1.1651 -0.2343 35 1 4.3159 2.6166 0.5093 36 1 6.0492 0.8973 0.0737 37 1 5.1483 -0.2649 1.0762 38 1 6.2863 2.4016 2.0311 39 1 9.2908 0.5792 2.0354 40 1 5.5963 1.5927 4.2712 41 1 4.8839 0.1407 3.5274 42 1 4.0521 3.0222 2.9605 43 1 3.1506 1.8597 3.9631 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352576897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:52 Heat of formation + Delta-G solvation = -203.028337 kcal Electronic energy + Delta-G solvation = -27442.579004 eV Core-core repulsion = 23350.851925 eV Total energy + Delta-G solvation = -4091.727079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.06050 -47.16358 -40.18151 -38.08266 -35.93215 -35.41096 -32.67602 -30.49365 -30.18711 -29.16902 -26.51727 -25.38546 -25.23466 -22.63995 -22.34289 -21.30545 -20.28643 -18.35288 -17.91839 -17.64845 -17.57084 -16.68854 -15.96408 -15.48112 -15.01803 -14.78409 -14.39336 -14.27895 -14.01642 -13.70026 -13.52823 -13.34140 -13.11480 -12.90874 -12.72047 -12.50526 -12.18655 -11.99361 -11.87452 -11.67086 -11.55487 -11.32472 -11.11489 -11.03239 -10.88502 -10.76024 -10.59017 -10.46657 -10.26166 -10.14431 -10.08331 -9.51967 -9.28509 -8.65828 -8.52968 -7.61856 -6.20309 -4.28642 3.06977 3.20758 3.28377 3.30661 3.41306 3.68240 4.00118 4.31218 4.49693 4.75189 4.98003 5.03892 5.10985 5.22702 5.26155 5.42221 5.55305 5.65235 5.76423 5.83898 5.96726 6.10753 6.15511 6.21838 6.28188 6.33493 6.43590 6.48216 6.57468 6.63549 6.71048 6.72001 6.75522 6.96252 6.96657 7.22682 7.40839 7.65452 7.85261 8.09516 8.46327 8.75377 9.05110 9.40250 10.83895 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.005313 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.315982 B = 5269.070244 C = 6413.332093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.248 3.752 3 H 0.061 0.939 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.591 5.591 13 C 0.098 3.902 14 C 0.517 3.483 15 O -0.568 6.568 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.139 4.139 19 C 0.084 3.916 20 O -0.379 6.379 21 C 0.402 3.598 22 F -0.207 7.207 23 F -0.213 7.213 24 C -0.132 4.132 25 C -0.091 4.091 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.161 0.839 40 H 0.057 0.943 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.411 2.765 7.612 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.321 5.321 13 C -0.045 4.045 14 C 0.305 3.695 15 O -0.451 6.451 16 C -0.128 4.128 17 C -0.154 4.154 18 C -0.176 4.176 19 C 0.028 3.972 20 O -0.300 6.300 21 C 0.310 3.690 22 F -0.189 7.189 23 F -0.195 7.195 24 C -0.169 4.169 25 C -0.129 4.129 26 H 0.113 0.887 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.178 0.822 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.527 2.434 8.011 11.950 hybrid contribution 0.242 -0.112 -1.342 1.369 sum 8.769 2.322 6.668 11.259 Atomic orbital electron populations 1.22154 0.98259 0.99907 1.00860 1.19217 0.91385 0.93776 0.80908 0.92106 1.21325 1.31817 1.13289 0.90000 0.92084 1.24864 0.94727 0.94945 0.98941 1.69846 1.36144 1.22620 1.23992 0.86535 0.78689 0.80157 0.82359 1.20495 1.19872 1.21117 1.48259 1.46952 1.12831 1.24011 1.21335 1.00136 0.83163 0.99891 1.20404 0.78284 0.88969 0.81822 1.90443 1.52938 1.69056 1.32626 1.21290 1.00367 0.94185 0.96956 1.21698 0.94452 1.00477 0.98812 1.22100 0.97434 1.01574 0.96520 1.22462 0.82826 0.94695 0.97264 1.88437 1.16674 1.53606 1.71315 1.23133 0.92691 0.79295 0.73924 1.93068 1.95941 1.96517 1.33408 1.93035 1.95325 1.42519 1.88662 1.21993 0.93618 1.06238 0.95088 1.21272 0.96246 0.98381 0.96970 0.88696 0.94787 0.96875 0.92558 0.93807 0.92803 0.91183 0.88775 0.87300 0.91705 0.91070 0.90694 0.91694 0.82195 0.92381 0.86391 0.91908 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.92 37.16 0.33 -3.01 16 2 C 0.25 5.53 1.80 -69.09 -0.12 5.41 16 3 H 0.06 1.39 4.33 -51.93 -0.22 1.17 16 4 C -0.53 -12.98 7.82 -34.44 -0.27 -13.24 16 5 H 0.06 1.56 7.71 -52.49 -0.40 1.16 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -22.79 11.32 55.43 0.63 -22.16 16 8 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -12.24 2.75 -175.27 -0.48 -12.72 16 13 C 0.10 1.87 9.64 59.85 0.58 2.45 16 14 C 0.52 10.30 5.57 -10.99 -0.06 10.24 16 15 O -0.57 -12.11 13.02 5.56 0.07 -12.03 16 16 C -0.11 -1.84 2.15 -91.77 -0.20 -2.03 16 17 C -0.12 -2.04 5.04 -26.73 -0.13 -2.17 16 18 C -0.14 -2.40 5.17 -26.73 -0.14 -2.53 16 19 C 0.08 1.30 2.40 -26.73 -0.06 1.23 16 20 O -0.38 -5.59 10.29 -35.23 -0.36 -5.95 16 21 C 0.40 4.70 6.26 101.05 0.63 5.33 16 22 F -0.21 -2.85 15.46 2.25 0.03 -2.81 16 23 F -0.21 -2.68 16.63 2.25 0.04 -2.64 16 24 C -0.13 -2.07 5.28 -26.73 -0.14 -2.21 16 25 C -0.09 -1.35 5.19 -26.73 -0.14 -1.49 16 26 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 27 H 0.03 0.72 6.59 -51.93 -0.34 0.37 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.97 7.65 -51.93 -0.40 0.57 16 32 H 0.07 1.28 6.33 -51.93 -0.33 0.95 16 33 H 0.09 1.58 7.31 -51.93 -0.38 1.20 16 34 H 0.11 2.23 5.30 -51.93 -0.28 1.96 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.22 6.50 -51.93 -0.34 0.88 16 37 H 0.07 1.48 7.22 -51.93 -0.37 1.10 16 38 H 0.06 0.95 7.20 -51.93 -0.37 0.58 16 39 H 0.16 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.12 2.19 5.11 -51.93 -0.27 1.93 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -27.35 333.52 -6.00 -33.36 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.11 Total: 5.35 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.18 Total: -0.43 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.15 Total: -34.89 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.29 Total: -17.98 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.07 Total: -5.45 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.35 -6.00 -33.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352576897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.670 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds