Wall clock time and date at job start Tue Mar 31 2020 09:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46559 * 2 1 4 4 C 1.50702 * 109.47183 * 240.00573 * 2 1 3 5 5 H 1.07998 * 119.99906 * 239.99864 * 4 2 1 6 6 C 1.37878 * 120.00088 * 59.99424 * 4 2 1 7 7 N 1.31512 * 120.00258 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99845 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46989 * 269.99814 * 8 6 4 10 10 H 1.48492 * 109.47198 * 30.00230 * 8 6 4 11 11 H 1.48503 * 109.46818 * 150.00395 * 8 6 4 12 12 N 1.46491 * 109.47456 * 120.00090 * 2 1 3 13 13 C 1.46502 * 120.00060 * 58.03709 * 12 2 1 14 14 C 1.34776 * 120.00461 * 238.04003 * 12 2 1 15 15 O 1.21280 * 120.00193 * 184.46268 * 14 12 2 16 16 C 1.50701 * 119.99805 * 4.46553 * 14 12 2 17 17 C 1.52999 * 109.47208 * 288.15560 * 16 14 12 18 18 C 1.52995 * 109.47303 * 300.00081 * 17 16 14 19 19 C 1.53008 * 109.46963 * 299.99896 * 18 17 16 20 20 O 1.42898 * 109.47131 * 179.97438 * 19 18 17 21 21 C 1.42896 * 113.99639 * 90.00097 * 20 19 18 22 22 F 1.39902 * 109.47676 * 299.99716 * 21 20 19 23 23 F 1.39897 * 109.47468 * 59.99998 * 21 20 19 24 24 C 1.52999 * 109.47026 * 59.99934 * 19 18 17 25 25 C 1.52996 * 109.47407 * 168.15458 * 16 14 12 26 26 H 1.09001 * 109.47659 * 59.99813 * 1 2 3 27 27 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47331 * 299.99675 * 1 2 3 29 29 H 0.97000 * 120.00510 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47128 * 95.17184 * 13 12 2 31 31 H 1.08992 * 109.47327 * 215.17753 * 13 12 2 32 32 H 1.09003 * 109.46908 * 335.18186 * 13 12 2 33 33 H 1.09003 * 109.47225 * 48.15345 * 16 14 12 34 34 H 1.09003 * 109.47329 * 60.00031 * 17 16 14 35 35 H 1.08996 * 109.47302 * 179.97438 * 17 16 14 36 36 H 1.08994 * 109.47648 * 179.97438 * 18 17 16 37 37 H 1.09006 * 109.47013 * 59.99683 * 18 17 16 38 38 H 1.08996 * 109.47036 * 299.99825 * 19 18 17 39 39 H 1.09008 * 109.47163 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47628 * 180.02562 * 24 19 18 41 41 H 1.09006 * 109.47345 * 59.99972 * 24 19 18 42 42 H 1.08996 * 109.47266 * 179.97438 * 25 16 14 43 43 H 1.09007 * 109.46929 * 300.00239 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.6296 -0.5455 -4.4125 10 1 2.4859 -2.5659 -3.7121 11 1 1.3430 -0.9489 -5.1121 12 7 2.0184 -0.6906 1.1961 13 6 1.6294 -2.0800 1.4499 14 6 2.8255 -0.0478 2.0631 15 8 3.2951 -0.6428 3.0098 16 6 3.1445 1.4105 1.8562 17 6 4.0855 1.5619 0.6593 18 6 5.3790 0.7898 0.9265 19 6 6.0556 1.3469 2.1808 20 8 7.2634 0.6254 2.4308 21 6 8.4159 1.1843 1.7973 22 9 8.2244 1.2010 0.4115 23 9 8.6130 2.4910 2.2565 24 6 5.1146 1.1955 3.3777 25 6 3.8210 1.9676 3.1103 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7093 1.1620 -3.4844 30 1 2.4014 -2.7488 1.0693 31 1 1.5115 -2.2342 2.5224 32 1 0.6858 -2.2909 0.9465 33 1 2.2230 1.9606 1.6657 34 1 3.6036 1.1651 -0.2343 35 1 4.3159 2.6166 0.5093 36 1 6.0492 0.8973 0.0737 37 1 5.1483 -0.2649 1.0762 38 1 6.2863 2.4016 2.0311 39 1 9.2908 0.5792 2.0354 40 1 5.5963 1.5927 4.2712 41 1 4.8839 0.1407 3.5274 42 1 4.0521 3.0222 2.9605 43 1 3.1506 1.8597 3.9631 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352576897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:52 Heat of formation + Delta-G solvation = -218.041193 kcal Electronic energy + Delta-G solvation = -27443.230010 eV Core-core repulsion = 23350.851925 eV Total energy + Delta-G solvation = -4092.378085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.02886 -48.14135 -41.65028 -39.37770 -37.46500 -36.88668 -34.53250 -31.80325 -31.50415 -30.94472 -27.98298 -27.25016 -26.32666 -24.10077 -23.62383 -22.85914 -21.70317 -19.61317 -19.21022 -18.73568 -18.60598 -18.44408 -17.55507 -16.97771 -16.62517 -16.18895 -15.98160 -15.51780 -15.18957 -15.07272 -14.72406 -14.62192 -14.53634 -14.33516 -14.15166 -13.76480 -13.59668 -13.45130 -13.18030 -13.14259 -13.04452 -12.85837 -12.78015 -12.61754 -12.45402 -12.38461 -12.13095 -12.06566 -11.80920 -11.75846 -11.40449 -11.10519 -10.81747 -10.49514 -10.15108 -9.30994 -8.12585 -6.25437 1.40636 1.44808 1.51480 1.82459 2.10103 2.36909 2.52374 2.74492 3.15817 3.60281 3.63196 3.73095 3.85179 3.90504 4.00513 4.14107 4.23180 4.31872 4.45066 4.53758 4.57994 4.67121 4.68816 4.80648 4.90354 4.94275 4.98026 4.99480 5.05960 5.10856 5.17909 5.22941 5.36885 5.43404 5.51209 5.61610 5.77246 5.80829 6.03360 6.24557 6.71526 6.90425 7.38582 7.51371 8.89909 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.005313 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.315982 B = 5269.070244 C = 6413.332093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.254 3.746 3 H 0.057 0.943 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.034 3.966 7 N -0.905 5.905 8 Si 0.942 3.058 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.281 1.281 12 N -0.599 5.599 13 C 0.098 3.902 14 C 0.511 3.489 15 O -0.583 6.583 16 C -0.105 4.105 17 C -0.111 4.111 18 C -0.132 4.132 19 C 0.089 3.911 20 O -0.393 6.393 21 C 0.396 3.604 22 F -0.221 7.221 23 F -0.217 7.217 24 C -0.129 4.129 25 C -0.086 4.086 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.211 0.789 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 3.693 8.260 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.153 3.847 3 H 0.075 0.925 4 C -0.571 4.571 5 H 0.063 0.937 6 C -0.167 4.167 7 N -0.543 5.543 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.207 1.207 12 N -0.329 5.329 13 C -0.045 4.045 14 C 0.301 3.699 15 O -0.466 6.466 16 C -0.126 4.126 17 C -0.149 4.149 18 C -0.170 4.170 19 C 0.032 3.968 20 O -0.315 6.315 21 C 0.305 3.695 22 F -0.203 7.203 23 F -0.199 7.199 24 C -0.166 4.166 25 C -0.124 4.124 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.227 0.773 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.401 3.357 8.665 13.219 hybrid contribution 0.023 -0.436 -1.524 1.585 sum 9.424 2.921 7.141 12.180 Atomic orbital electron populations 1.22010 0.97773 0.99867 1.00635 1.19021 0.91583 0.93395 0.80691 0.92516 1.21432 1.31542 1.12841 0.91274 0.93709 1.25367 0.95007 0.95531 1.00817 1.69918 1.36728 1.23297 1.24392 0.85796 0.78174 0.79053 0.80055 1.20554 1.20159 1.20660 1.48314 1.47378 1.13382 1.23838 1.21367 1.00088 0.82504 1.00505 1.20941 0.77542 0.90141 0.81286 1.90451 1.53158 1.69795 1.33161 1.21342 1.00803 0.92309 0.98120 1.21595 0.94225 1.01591 0.97485 1.22009 0.97600 0.99671 0.97707 1.22332 0.83242 0.95197 0.95996 1.88427 1.17141 1.54216 1.71707 1.23907 0.92978 0.79663 0.72930 1.93042 1.96024 1.96586 1.34671 1.93025 1.95228 1.43045 1.88607 1.21906 0.94241 1.04497 0.95981 1.21300 0.95675 0.99695 0.95725 0.90671 0.94713 0.95191 0.92508 0.94568 0.91853 0.90632 0.88258 0.90660 0.89332 0.91350 0.93956 0.90280 0.77299 0.90485 0.89470 0.88967 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.24 8.92 71.98 0.64 -5.60 16 2 C 0.25 11.40 1.80 44.25 0.08 11.47 16 3 H 0.06 2.61 4.33 -2.39 -0.01 2.60 16 4 C -0.53 -26.58 7.82 25.60 0.20 -26.38 16 5 H 0.04 2.34 7.71 -2.91 -0.02 2.32 16 6 C 0.03 1.69 5.30 84.66 0.45 2.14 16 7 N -0.90 -46.43 11.32 21.45 0.24 -46.19 16 8 Si 0.94 41.15 29.54 68.60 2.03 43.17 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 N -0.60 -24.92 2.75 -826.82 -2.28 -27.20 16 13 C 0.10 3.77 9.64 127.77 1.23 5.00 16 14 C 0.51 20.31 5.57 87.66 0.49 20.80 16 15 O -0.58 -24.82 13.02 -3.03 -0.04 -24.86 16 16 C -0.10 -3.49 2.15 -11.54 -0.02 -3.51 16 17 C -0.11 -3.81 5.04 30.59 0.15 -3.66 16 18 C -0.13 -4.54 5.17 30.60 0.16 -4.38 16 19 C 0.09 2.60 2.40 30.60 0.07 2.68 16 20 O -0.39 -10.95 10.29 -148.98 -1.53 -12.48 16 21 C 0.40 8.34 6.26 113.37 0.71 9.05 16 22 F -0.22 -5.74 15.46 44.97 0.70 -5.04 16 23 F -0.22 -4.89 16.63 44.97 0.75 -4.14 16 24 C -0.13 -3.82 5.28 30.60 0.16 -3.66 16 25 C -0.09 -2.37 5.19 30.59 0.16 -2.21 16 26 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 27 H 0.03 1.45 6.59 -2.39 -0.02 1.43 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 2.27 7.65 -2.39 -0.02 2.25 16 32 H 0.08 2.76 6.33 -2.39 -0.02 2.75 16 33 H 0.10 3.20 7.31 -2.39 -0.02 3.19 16 34 H 0.07 3.12 5.30 -2.39 -0.01 3.11 16 35 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.07 2.34 6.50 -2.39 -0.02 2.32 16 37 H 0.04 1.71 7.22 -2.38 -0.02 1.69 16 38 H 0.08 2.11 7.20 -2.39 -0.02 2.09 16 39 H 0.21 2.26 8.14 -2.38 -0.02 2.25 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 3.19 5.11 -2.38 -0.01 3.18 16 42 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -58.43 333.52 5.37 -53.05 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.03 Total: 21.93 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 4.48 Total: 1.75 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -2.03 Total: -73.39 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.57 Total: -37.34 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 1.44 Total: -9.18 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -58.43 5.37 -53.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352576897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.987 kcal (2) G-P(sol) polarization free energy of solvation -58.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds