Wall clock time and date at job start Tue Mar 31 2020 09:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47428 * 2 1 4 4 C 1.50706 * 109.47533 * 119.99853 * 2 1 3 5 5 H 1.07998 * 120.00144 * 119.99400 * 4 2 1 6 6 C 1.37876 * 119.99753 * 300.00088 * 4 2 1 7 7 N 1.31513 * 120.00211 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99877 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47057 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47060 * 120.00290 * 8 6 4 11 11 H 1.48503 * 109.46910 * 240.00321 * 8 6 4 12 12 N 1.46501 * 109.47098 * 239.99866 * 2 1 3 13 13 C 1.46499 * 119.99983 * 297.32318 * 12 2 1 14 14 C 1.34776 * 120.00094 * 117.32389 * 12 2 1 15 15 O 1.21272 * 120.00335 * 184.54591 * 14 12 2 16 16 C 1.50708 * 119.99883 * 4.53809 * 14 12 2 17 17 C 1.52994 * 109.47559 * 288.43303 * 16 14 12 18 18 C 1.53006 * 109.46925 * 299.99872 * 17 16 14 19 19 C 1.53002 * 109.47251 * 300.00139 * 18 17 16 20 20 O 1.42892 * 109.47054 * 180.02562 * 19 18 17 21 21 C 1.42901 * 114.00259 * 89.99802 * 20 19 18 22 22 F 1.39898 * 109.47199 * 300.00248 * 21 20 19 23 23 F 1.39899 * 109.47041 * 59.99616 * 21 20 19 24 24 C 1.52999 * 109.47023 * 59.99839 * 19 18 17 25 25 C 1.52997 * 109.46896 * 168.42688 * 16 14 12 26 26 H 1.09000 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47025 * 300.00056 * 1 2 3 28 28 H 1.08998 * 109.47570 * 60.00173 * 1 2 3 29 29 H 0.96999 * 120.00381 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47023 * 95.10871 * 13 12 2 31 31 H 1.09002 * 109.47103 * 215.10891 * 13 12 2 32 32 H 1.09005 * 109.47057 * 335.10842 * 13 12 2 33 33 H 1.09000 * 109.46942 * 48.43471 * 16 14 12 34 34 H 1.08999 * 109.47048 * 59.99611 * 17 16 14 35 35 H 1.08996 * 109.47372 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46961 * 179.97438 * 18 17 16 37 37 H 1.09006 * 109.46748 * 60.00041 * 18 17 16 38 38 H 1.09006 * 109.46448 * 299.99856 * 19 18 17 39 39 H 1.08996 * 109.47225 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46801 * 180.02562 * 24 19 18 41 41 H 1.08996 * 109.47038 * 60.00381 * 24 19 18 42 42 H 1.09006 * 109.47230 * 180.02562 * 25 16 14 43 43 H 1.09000 * 109.47529 * 300.00590 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.1456 -2.2875 3.6038 10 1 3.1467 -0.1872 4.8164 11 1 1.1662 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.7134 -2.1092 -1.3987 14 6 2.7480 -0.0210 -2.1102 15 8 3.0823 -0.5692 -3.1390 16 6 3.1485 1.4091 -1.8539 17 6 1.9184 2.3116 -1.9684 18 6 1.3271 2.1918 -3.3745 19 6 2.3726 2.6213 -4.4058 20 8 1.8202 2.5099 -5.7189 21 6 1.1655 3.6949 -6.1765 22 9 0.1125 4.0098 -5.3110 23 9 2.0805 4.7529 -6.2019 24 6 3.6027 1.7187 -4.2911 25 6 4.1940 1.8385 -2.8850 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7090 1.1615 3.4844 30 1 0.8266 -2.2043 -2.0254 31 1 2.5574 -2.5961 -1.8872 32 1 1.5293 -2.5826 -0.4343 33 1 3.5697 1.4944 -0.8522 34 1 1.1736 2.0056 -1.2338 35 1 2.2081 3.3459 -1.7835 36 1 0.4505 2.8344 -3.4560 37 1 1.0374 1.1574 -3.5599 38 1 2.6622 3.6556 -4.2203 39 1 0.7734 3.5289 -7.1798 40 1 4.3477 2.0250 -5.0255 41 1 3.3130 0.6845 -4.4766 42 1 4.4840 2.8728 -2.6994 43 1 5.0704 1.1955 -2.8034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352576898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:55 Heat of formation + Delta-G solvation = -203.974219 kcal Electronic energy + Delta-G solvation = -27272.613116 eV Core-core repulsion = 23180.845021 eV Total energy + Delta-G solvation = -4091.768095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.13527 -47.23875 -40.23023 -38.13718 -35.95057 -35.45584 -32.68262 -30.57397 -30.24272 -29.19937 -26.51794 -25.34514 -25.32590 -22.64207 -22.40574 -21.42141 -20.36305 -18.42147 -17.93764 -17.71800 -17.59657 -16.65455 -16.08766 -15.59655 -15.00910 -14.80172 -14.40839 -14.35461 -14.08484 -13.68974 -13.60458 -13.41513 -13.17448 -13.10165 -12.61078 -12.53328 -12.24480 -11.99284 -11.94825 -11.62723 -11.56556 -11.30707 -11.23132 -11.07829 -10.95095 -10.73973 -10.67091 -10.50640 -10.29261 -10.21799 -10.08904 -9.64931 -9.30869 -8.66424 -8.53912 -7.61853 -6.21264 -4.29375 2.99537 3.18474 3.27644 3.30748 3.40021 3.60908 3.99878 4.29991 4.42764 4.66983 4.90243 4.95451 5.10079 5.17540 5.20529 5.34452 5.48029 5.62814 5.67919 5.75434 5.90586 6.10316 6.14453 6.22912 6.24310 6.29000 6.37908 6.43454 6.49609 6.55264 6.60011 6.66221 6.74688 6.89339 6.92483 7.23197 7.40387 7.64643 7.83494 8.09581 8.47344 8.73869 9.04543 9.39219 10.83445 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.004011 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.118769 B = 6978.628657 C = 7306.587542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.248 3.752 3 H 0.062 0.938 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.095 3.905 14 C 0.517 3.483 15 O -0.569 6.569 16 C -0.110 4.110 17 C -0.114 4.114 18 C -0.142 4.142 19 C 0.085 3.915 20 O -0.378 6.378 21 C 0.402 3.598 22 F -0.208 7.208 23 F -0.212 7.212 24 C -0.133 4.133 25 C -0.091 4.091 26 H 0.032 0.968 27 H 0.094 0.906 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.162 0.838 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 5.528 -12.428 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.320 5.320 13 C -0.048 4.048 14 C 0.305 3.695 15 O -0.451 6.451 16 C -0.131 4.131 17 C -0.151 4.151 18 C -0.179 4.179 19 C 0.029 3.971 20 O -0.300 6.300 21 C 0.310 3.690 22 F -0.190 7.190 23 F -0.194 7.194 24 C -0.170 4.170 25 C -0.128 4.128 26 H 0.051 0.949 27 H 0.112 0.888 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.179 0.821 40 H 0.077 0.923 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.718 5.211 -12.855 13.889 hybrid contribution 0.113 -0.067 1.275 1.282 sum 0.831 5.144 -11.580 12.698 Atomic orbital electron populations 1.22136 0.98067 0.99971 1.00780 1.19199 0.91421 0.93779 0.80895 0.92096 1.21403 1.31918 1.13373 0.90187 0.91936 1.24877 0.94739 0.94939 0.99005 1.69857 1.36201 1.22610 1.23900 0.86452 0.78694 0.79727 0.82664 1.19736 1.20860 1.20886 1.48264 1.50768 1.10346 1.22584 1.21384 0.99369 0.82564 1.01499 1.20397 0.77884 0.88255 0.82959 1.90441 1.57862 1.70149 1.26635 1.21313 0.97291 0.92948 1.01517 1.21670 0.97231 0.99372 0.96872 1.22150 0.98062 1.03186 0.94547 1.22428 0.94644 1.00140 0.79932 1.88444 1.72725 1.33700 1.35113 1.23144 0.76291 0.76164 0.93441 1.93058 1.58626 1.93238 1.74121 1.93041 1.68937 1.60287 1.97184 1.22004 0.94402 1.03748 0.96830 1.21265 0.97556 1.00782 0.93240 0.94890 0.88767 0.96772 0.92602 0.94378 0.92651 0.90412 0.87940 0.88927 0.91247 0.91065 0.90794 0.91571 0.82143 0.92270 0.86386 0.91866 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.64 37.15 0.32 -3.01 16 2 C 0.25 5.57 1.78 -69.08 -0.12 5.45 16 3 H 0.06 1.41 4.34 -51.93 -0.23 1.18 16 4 C -0.53 -13.22 7.93 -34.44 -0.27 -13.49 16 5 H 0.06 1.59 7.24 -52.49 -0.38 1.21 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -22.94 11.32 55.43 0.63 -22.31 16 8 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.59 -12.30 2.75 -175.26 -0.48 -12.78 16 13 C 0.10 1.83 9.37 59.85 0.56 2.39 16 14 C 0.52 10.31 5.57 -10.98 -0.06 10.25 16 15 O -0.57 -12.08 13.03 5.56 0.07 -12.01 16 16 C -0.11 -1.88 2.15 -91.77 -0.20 -2.08 16 17 C -0.11 -1.84 5.04 -26.73 -0.13 -1.98 16 18 C -0.14 -2.23 5.17 -26.73 -0.14 -2.37 16 19 C 0.08 1.24 2.40 -26.73 -0.06 1.17 16 20 O -0.38 -5.23 10.29 -35.23 -0.36 -5.59 16 21 C 0.40 4.32 6.26 101.05 0.63 4.95 16 22 F -0.21 -2.59 15.46 2.25 0.03 -2.56 16 23 F -0.21 -2.50 16.63 2.25 0.04 -2.47 16 24 C -0.13 -2.03 5.29 -26.73 -0.14 -2.17 16 25 C -0.09 -1.35 5.19 -26.73 -0.14 -1.49 16 26 H 0.03 0.71 7.74 -51.93 -0.40 0.31 16 27 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 32 H 0.08 1.50 6.90 -51.93 -0.36 1.14 16 33 H 0.10 1.83 7.32 -51.93 -0.38 1.45 16 34 H 0.09 1.67 4.86 -51.93 -0.25 1.42 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.08 6.50 -51.93 -0.34 0.74 16 37 H 0.07 1.33 7.22 -51.93 -0.37 0.95 16 38 H 0.07 0.92 7.20 -51.93 -0.37 0.54 16 39 H 0.16 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.12 2.14 5.12 -51.93 -0.27 1.88 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -27.58 333.32 -6.05 -33.63 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.13 Total: 4.96 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.15 Total: -0.77 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.14 Total: -35.10 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.29 Total: -17.60 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.58 -6.05 -33.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352576898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.340 kcal (2) G-P(sol) polarization free energy of solvation -27.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds