Wall clock time and date at job start Tue Mar 31 2020 09:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47428 * 2 1 4 4 C 1.50706 * 109.47533 * 119.99853 * 2 1 3 5 5 H 1.07998 * 120.00144 * 119.99400 * 4 2 1 6 6 C 1.37876 * 119.99753 * 300.00088 * 4 2 1 7 7 N 1.31513 * 120.00211 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99877 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47057 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47060 * 120.00290 * 8 6 4 11 11 H 1.48503 * 109.46910 * 240.00321 * 8 6 4 12 12 N 1.46501 * 109.47098 * 239.99866 * 2 1 3 13 13 C 1.46499 * 119.99983 * 297.32318 * 12 2 1 14 14 C 1.34776 * 120.00094 * 117.32389 * 12 2 1 15 15 O 1.21272 * 120.00335 * 184.54591 * 14 12 2 16 16 C 1.50708 * 119.99883 * 4.53809 * 14 12 2 17 17 C 1.52994 * 109.47559 * 288.43303 * 16 14 12 18 18 C 1.53006 * 109.46925 * 299.99872 * 17 16 14 19 19 C 1.53002 * 109.47251 * 300.00139 * 18 17 16 20 20 O 1.42892 * 109.47054 * 180.02562 * 19 18 17 21 21 C 1.42901 * 114.00259 * 89.99802 * 20 19 18 22 22 F 1.39898 * 109.47199 * 300.00248 * 21 20 19 23 23 F 1.39899 * 109.47041 * 59.99616 * 21 20 19 24 24 C 1.52999 * 109.47023 * 59.99839 * 19 18 17 25 25 C 1.52997 * 109.46896 * 168.42688 * 16 14 12 26 26 H 1.09000 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47025 * 300.00056 * 1 2 3 28 28 H 1.08998 * 109.47570 * 60.00173 * 1 2 3 29 29 H 0.96999 * 120.00381 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47023 * 95.10871 * 13 12 2 31 31 H 1.09002 * 109.47103 * 215.10891 * 13 12 2 32 32 H 1.09005 * 109.47057 * 335.10842 * 13 12 2 33 33 H 1.09000 * 109.46942 * 48.43471 * 16 14 12 34 34 H 1.08999 * 109.47048 * 59.99611 * 17 16 14 35 35 H 1.08996 * 109.47372 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46961 * 179.97438 * 18 17 16 37 37 H 1.09006 * 109.46748 * 60.00041 * 18 17 16 38 38 H 1.09006 * 109.46448 * 299.99856 * 19 18 17 39 39 H 1.08996 * 109.47225 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.46801 * 180.02562 * 24 19 18 41 41 H 1.08996 * 109.47038 * 60.00381 * 24 19 18 42 42 H 1.09006 * 109.47230 * 180.02562 * 25 16 14 43 43 H 1.09000 * 109.47529 * 300.00590 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.1456 -2.2875 3.6038 10 1 3.1467 -0.1872 4.8164 11 1 1.1662 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.7134 -2.1092 -1.3987 14 6 2.7480 -0.0210 -2.1102 15 8 3.0823 -0.5692 -3.1390 16 6 3.1485 1.4091 -1.8539 17 6 1.9184 2.3116 -1.9684 18 6 1.3271 2.1918 -3.3745 19 6 2.3726 2.6213 -4.4058 20 8 1.8202 2.5099 -5.7189 21 6 1.1655 3.6949 -6.1765 22 9 0.1125 4.0098 -5.3110 23 9 2.0805 4.7529 -6.2019 24 6 3.6027 1.7187 -4.2911 25 6 4.1940 1.8385 -2.8850 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.7090 1.1615 3.4844 30 1 0.8266 -2.2043 -2.0254 31 1 2.5574 -2.5961 -1.8872 32 1 1.5293 -2.5826 -0.4343 33 1 3.5697 1.4944 -0.8522 34 1 1.1736 2.0056 -1.2338 35 1 2.2081 3.3459 -1.7835 36 1 0.4505 2.8344 -3.4560 37 1 1.0374 1.1574 -3.5599 38 1 2.6622 3.6556 -4.2203 39 1 0.7734 3.5289 -7.1798 40 1 4.3477 2.0250 -5.0255 41 1 3.3130 0.6845 -4.4766 42 1 4.4840 2.8728 -2.6994 43 1 5.0704 1.1955 -2.8034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352576898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:54 Heat of formation + Delta-G solvation = -219.111923 kcal Electronic energy + Delta-G solvation = -27273.269537 eV Core-core repulsion = 23180.845021 eV Total energy + Delta-G solvation = -4092.424515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.01546 -48.12700 -41.67769 -39.37791 -37.46528 -36.90946 -34.54123 -31.83819 -31.50333 -30.99087 -27.96652 -27.26488 -26.31549 -24.02451 -23.64863 -23.00662 -21.72211 -19.58661 -19.16758 -18.76398 -18.59398 -18.41864 -17.64290 -17.03554 -16.63928 -16.10632 -15.99673 -15.53702 -15.21644 -14.97181 -14.78502 -14.71129 -14.52156 -14.35326 -13.99266 -13.76442 -13.67054 -13.45468 -13.15916 -13.09494 -12.97194 -12.90437 -12.78728 -12.72484 -12.51372 -12.33412 -12.18958 -12.08836 -11.82582 -11.76054 -11.39275 -11.14861 -10.86278 -10.49525 -10.17160 -9.31014 -8.13440 -6.27138 1.41994 1.46747 1.55319 1.81738 2.09828 2.36427 2.52157 2.75600 3.15458 3.58343 3.61156 3.72958 3.83934 3.89553 4.00957 4.12788 4.19546 4.33149 4.42108 4.52099 4.61510 4.66717 4.67620 4.76342 4.87408 4.93936 4.95428 4.98616 5.03410 5.10232 5.16155 5.17621 5.27921 5.39957 5.50793 5.59057 5.76272 5.78700 6.00338 6.23391 6.71531 6.89472 7.37344 7.50021 8.89869 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.004011 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.118769 B = 6978.628657 C = 7306.587542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.255 3.745 3 H 0.057 0.943 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.030 3.970 7 N -0.907 5.907 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.599 5.599 13 C 0.096 3.904 14 C 0.511 3.489 15 O -0.582 6.582 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.134 4.134 19 C 0.089 3.911 20 O -0.392 6.392 21 C 0.397 3.603 22 F -0.220 7.220 23 F -0.218 7.218 24 C -0.129 4.129 25 C -0.087 4.087 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.266 0.734 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.211 0.789 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 6.472 -13.136 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.154 3.846 3 H 0.074 0.926 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.171 4.171 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.329 5.329 13 C -0.047 4.047 14 C 0.301 3.699 15 O -0.465 6.465 16 C -0.129 4.129 17 C -0.147 4.147 18 C -0.172 4.172 19 C 0.032 3.968 20 O -0.314 6.314 21 C 0.306 3.694 22 F -0.202 7.202 23 F -0.200 7.200 24 C -0.166 4.166 25 C -0.125 4.125 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.227 0.773 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.137 6.152 -13.575 14.947 hybrid contribution -0.035 -0.368 1.435 1.482 sum 1.102 5.784 -12.140 13.492 Atomic orbital electron populations 1.21963 0.97839 0.99608 1.00335 1.18994 0.91457 0.93398 0.80778 0.92590 1.21599 1.31913 1.13238 0.91399 0.92942 1.25466 0.94948 0.95535 1.01170 1.69942 1.36789 1.23398 1.24432 0.85608 0.78120 0.78676 0.79814 1.19855 1.20600 1.20677 1.48317 1.51263 1.10909 1.22392 1.21402 0.99868 0.82004 1.01432 1.20921 0.77233 0.89316 0.82424 1.90449 1.58217 1.70818 1.27038 1.21349 0.98367 0.91325 1.01840 1.21613 0.96189 1.00294 0.96569 1.22061 0.98780 1.01595 0.94765 1.22297 0.93833 1.00441 0.80202 1.88433 1.73014 1.35556 1.34401 1.23902 0.75629 0.75030 0.94874 1.93035 1.59058 1.93252 1.74815 1.93029 1.69235 1.60512 1.97209 1.21892 0.95231 1.02115 0.97359 1.21285 0.96526 1.02325 0.92319 0.95117 0.90711 0.95560 0.92495 0.93429 0.92438 0.90843 0.88796 0.91110 0.88925 0.90512 0.93531 0.90239 0.77334 0.90617 0.89409 0.89016 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 8.64 71.98 0.62 -5.54 16 2 C 0.26 11.56 1.78 44.24 0.08 11.64 16 3 H 0.06 2.61 4.34 -2.39 -0.01 2.60 16 4 C -0.54 -27.17 7.93 25.60 0.20 -26.97 16 5 H 0.05 2.68 7.24 -2.91 -0.02 2.66 16 6 C 0.03 1.49 5.30 84.65 0.45 1.93 16 7 N -0.91 -46.84 11.32 21.45 0.24 -46.59 16 8 Si 0.95 40.61 29.54 68.60 2.03 42.64 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.60 -25.14 2.75 -826.80 -2.28 -27.42 16 13 C 0.10 3.71 9.37 127.77 1.20 4.91 16 14 C 0.51 20.46 5.57 87.66 0.49 20.94 16 15 O -0.58 -24.84 13.03 -3.00 -0.04 -24.88 16 16 C -0.11 -3.63 2.15 -11.54 -0.02 -3.66 16 17 C -0.11 -3.43 5.04 30.59 0.15 -3.27 16 18 C -0.13 -4.11 5.17 30.60 0.16 -3.95 16 19 C 0.09 2.43 2.40 30.59 0.07 2.50 16 20 O -0.39 -10.07 10.29 -148.98 -1.53 -11.61 16 21 C 0.40 7.48 6.26 113.37 0.71 8.19 16 22 F -0.22 -5.02 15.46 44.97 0.70 -4.32 16 23 F -0.22 -4.56 16.63 44.97 0.75 -3.81 16 24 C -0.13 -3.73 5.29 30.60 0.16 -3.57 16 25 C -0.09 -2.44 5.19 30.60 0.16 -2.28 16 26 H 0.03 1.32 7.74 -2.39 -0.02 1.30 16 27 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 28 H 0.03 1.06 7.57 -2.39 -0.02 1.04 16 29 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.16 7.65 -2.39 -0.02 2.14 16 32 H 0.07 2.86 6.90 -2.38 -0.02 2.85 16 33 H 0.09 3.33 7.32 -2.39 -0.02 3.31 16 34 H 0.07 2.55 4.86 -2.39 -0.01 2.54 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.08 2.24 6.50 -2.39 -0.02 2.22 16 37 H 0.05 1.67 7.22 -2.38 -0.02 1.65 16 38 H 0.08 1.98 7.20 -2.38 -0.02 1.96 16 39 H 0.21 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.09 3.15 5.12 -2.39 -0.01 3.14 16 42 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -58.34 333.32 5.32 -53.03 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 1.03 Total: 22.11 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 4.43 Total: 0.86 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.03 Total: -74.01 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.57 Total: -36.49 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 1.44 Total: -8.13 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -58.34 5.32 -53.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352576898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.087 kcal (2) G-P(sol) polarization free energy of solvation -58.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds