Wall clock time and date at job start Tue Mar 31 2020 09:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46627 * 2 1 4 4 C 1.50693 * 109.47222 * 119.99814 * 2 1 3 5 5 C 1.38243 * 120.00213 * 79.72953 * 4 2 1 6 6 C 1.38225 * 120.00162 * 179.78610 * 5 4 2 7 7 C 1.38236 * 120.00107 * 0.44063 * 6 5 4 8 8 C 1.38232 * 120.00040 * 359.81424 * 7 6 5 9 9 C 1.38237 * 119.99998 * 359.97438 * 8 7 6 10 10 N 1.46899 * 109.47079 * 239.99940 * 2 1 3 11 11 C 1.46901 * 110.99998 * 59.99540 * 10 2 1 12 12 C 1.53004 * 109.47102 * 60.77381 * 11 10 2 13 13 C 1.52999 * 109.47594 * 174.60410 * 12 11 10 14 14 S 1.80994 * 109.47192 * 179.97438 * 13 12 11 15 15 C 1.76207 * 99.99811 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99747 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00262 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99691 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46970 * 59.99908 * 19 17 15 21 21 H 1.48500 * 109.46836 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46711 * 300.00053 * 19 17 15 23 23 C 1.46897 * 111.00205 * 183.95137 * 10 2 1 24 24 C 1.53001 * 117.49891 * 182.51060 * 23 10 2 25 25 C 1.52999 * 117.49844 * 113.88580 * 23 10 2 26 26 H 1.08997 * 109.47631 * 60.00012 * 1 2 3 27 27 H 1.08999 * 109.47108 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 299.99775 * 1 2 3 29 29 H 1.08003 * 119.99542 * 359.97438 * 5 4 2 30 30 H 1.08003 * 119.99815 * 180.27050 * 6 5 4 31 31 H 1.08004 * 119.99877 * 179.82970 * 7 6 5 32 32 H 1.07997 * 120.00294 * 180.02562 * 8 7 6 33 33 H 1.07993 * 120.00347 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47819 * 180.77159 * 11 10 2 35 35 H 1.09002 * 109.47344 * 300.77825 * 11 10 2 36 36 H 1.09004 * 109.47146 * 294.60595 * 12 11 10 37 37 H 1.09001 * 109.47213 * 54.60253 * 12 11 10 38 38 H 1.09004 * 109.47024 * 300.00258 * 13 12 11 39 39 H 1.09001 * 109.46969 * 59.99694 * 13 12 11 40 40 H 0.96997 * 119.99643 * 179.97438 * 18 17 15 41 41 H 1.08998 * 115.56061 * 328.19540 * 23 10 2 42 42 H 1.09004 * 117.49983 * 145.02458 * 24 23 10 43 43 H 1.08996 * 117.50010 * 0.02562 * 24 23 10 44 44 H 1.09005 * 117.49752 * 0.02562 * 25 23 10 45 45 H 1.09000 * 117.49670 * 214.98269 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.0616 -2.0920 1.2675 6 6 2.5265 -2.7435 2.3944 7 6 2.9537 -2.0136 3.4879 8 6 2.9196 -0.6321 3.4529 9 6 2.4588 0.0195 2.3242 10 7 2.0197 -0.6925 -1.1994 11 6 1.5486 -0.0265 -2.4211 12 6 2.0747 1.4099 -2.4541 13 6 1.6979 2.0606 -3.7866 14 16 2.3197 3.7600 -3.8253 15 6 1.7601 4.2542 -5.4213 16 1 1.2097 3.5604 -6.0393 17 6 2.0268 5.5353 -5.8843 18 7 2.6981 6.3808 -5.1312 19 14 1.4329 6.0595 -7.5761 20 1 -0.0474 5.9578 -7.6345 21 1 1.8437 7.4635 -7.8318 22 1 2.0311 5.1736 -8.6070 23 6 3.4851 -0.7945 -1.1871 24 6 4.1585 -1.4400 -2.3998 25 6 4.0949 -2.1928 -1.0693 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7239 -2.6622 0.4147 30 1 2.5533 -3.8228 2.4217 31 1 3.3144 -2.5227 4.3695 32 1 3.2538 -0.0619 4.3070 33 1 2.4325 1.0988 2.2967 34 1 1.9141 -0.5673 -3.2940 35 1 0.4587 -0.0144 -2.4312 36 1 1.6332 1.9775 -1.6349 37 1 3.1594 1.4021 -2.3475 38 1 2.1394 1.4930 -4.6058 39 1 0.6132 2.0684 -3.8932 40 1 2.8847 7.2759 -5.4549 41 1 4.0095 0.0262 -0.6978 42 1 5.1261 -1.0441 -2.7083 43 1 3.5143 -1.7886 -3.2070 44 1 3.4087 -3.0370 -1.0013 45 1 5.0206 -2.2919 -0.5023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352828440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:14 Heat of formation + Delta-G solvation = 43.292189 kcal Electronic energy + Delta-G solvation = -22533.137181 eV Core-core repulsion = 19449.073763 eV Total energy + Delta-G solvation = -3084.063418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06159 -38.28685 -35.39568 -33.40198 -32.42638 -30.96201 -30.51152 -28.89061 -25.97208 -25.36071 -23.31283 -22.60667 -22.19279 -21.85149 -21.10566 -19.04637 -17.52489 -17.22876 -16.23532 -15.72212 -15.21067 -15.03406 -14.80357 -14.70538 -14.22461 -13.95464 -13.67644 -13.42607 -13.18637 -12.91623 -12.70699 -12.36307 -12.21617 -11.95227 -11.72601 -11.56633 -11.48014 -11.31810 -11.06429 -11.03740 -10.84225 -10.79186 -10.70661 -10.36758 -10.20621 -10.05193 -9.69545 -9.05087 -8.94721 -8.73864 -8.36675 -8.11239 -6.52944 -6.22606 -3.92940 1.29290 1.37908 3.21842 3.23004 3.27620 3.56989 3.65103 3.84958 3.89651 4.22822 4.58401 4.85162 4.92707 4.98783 5.00718 5.09215 5.13082 5.16345 5.18662 5.29138 5.32470 5.37516 5.45602 5.53832 5.56866 5.65683 5.69128 5.73298 5.76764 5.84045 5.93399 5.97410 6.00200 6.01901 6.12618 6.19235 6.20911 6.37267 6.40542 6.46192 6.52095 6.61588 6.73792 6.95049 7.11030 7.18542 7.60314 8.36592 9.23593 10.85552 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.002854 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.416667 B = 9809.567727 C =10162.720194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.118 3.882 3 H 0.058 0.942 4 C -0.071 4.071 5 C -0.085 4.085 6 C -0.128 4.128 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.116 4.116 10 N -0.502 5.502 11 C 0.055 3.945 12 C -0.130 4.130 13 C -0.108 4.108 14 S -0.137 6.137 15 C -0.515 4.515 16 H 0.071 0.929 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.016 3.984 24 C -0.176 4.176 25 C -0.162 4.162 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.267 0.733 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -18.215 14.465 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.076 0.924 4 C -0.071 4.071 5 C -0.103 4.103 6 C -0.146 4.146 7 C -0.144 4.144 8 C -0.142 4.142 9 C -0.135 4.135 10 N -0.224 5.224 11 C -0.073 4.073 12 C -0.170 4.170 13 C -0.257 4.257 14 S 0.091 5.909 15 C -0.664 4.664 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.506 5.506 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.093 4.093 24 C -0.213 4.213 25 C -0.200 4.200 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.091 -17.912 15.257 23.529 hybrid contribution -0.615 0.629 -1.977 2.163 sum -0.523 -17.283 13.280 21.802 Atomic orbital electron populations 1.21871 0.93293 1.02561 1.02233 1.20582 0.95625 0.95500 0.87305 0.92393 1.19773 0.98587 0.94057 0.94679 1.21020 0.97883 0.93928 0.97487 1.21140 1.00007 0.99612 0.93824 1.21096 1.00602 0.94212 0.98474 1.21052 1.00499 0.94603 0.98076 1.21068 0.99214 0.99820 0.93397 1.62112 1.07621 1.50940 1.01763 1.22361 1.00376 0.92784 0.91811 1.21905 1.01620 0.95899 0.97572 1.23174 1.02500 1.01565 0.98457 1.84618 1.74463 1.06195 1.25630 1.22642 1.41341 1.01091 1.01290 0.91040 1.25016 0.94884 0.95535 0.98352 1.70015 1.37596 1.06263 1.36735 0.86234 0.79181 0.77659 0.82525 1.19925 1.20819 1.19935 1.22238 0.87929 0.96111 1.02972 1.23079 1.02005 1.04182 0.92063 1.23044 1.01773 0.95506 0.99690 0.91610 0.91860 0.92135 0.85446 0.86527 0.86642 0.86431 0.86319 0.90510 0.90355 0.91741 0.91526 0.92215 0.92260 0.92280 0.89412 0.88806 0.88429 0.88587 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.93 37.16 0.33 -1.19 16 2 C 0.12 1.36 1.85 -68.87 -0.13 1.24 16 3 H 0.06 0.75 6.30 -51.93 -0.33 0.42 16 4 C -0.07 -0.78 4.05 -104.62 -0.42 -1.20 16 5 C -0.08 -0.88 7.65 -39.58 -0.30 -1.18 16 6 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 7 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 8 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 9 C -0.12 -1.24 9.67 -39.58 -0.38 -1.63 16 10 N -0.50 -5.91 4.08 -220.10 -0.90 -6.81 16 11 C 0.06 0.72 4.80 -3.82 -0.02 0.70 16 12 C -0.13 -2.09 4.56 -26.73 -0.12 -2.21 16 13 C -0.11 -2.16 5.67 37.16 0.21 -1.95 16 14 S -0.14 -3.61 21.44 -107.50 -2.30 -5.91 16 15 C -0.52 -14.86 9.50 30.94 0.29 -14.57 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 18 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 19 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.02 0.19 2.89 -67.71 -0.20 0.00 16 24 C -0.18 -1.97 9.72 -26.73 -0.26 -2.23 16 25 C -0.16 -1.67 9.16 -26.73 -0.24 -1.92 16 26 H 0.06 0.73 6.39 -51.93 -0.33 0.40 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.13 1.32 7.15 -52.48 -0.38 0.94 16 30 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 31 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 34 H 0.08 1.00 6.65 -51.93 -0.35 0.66 16 35 H 0.08 0.99 6.26 -51.93 -0.33 0.66 16 36 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 37 H 0.07 1.13 7.08 -51.93 -0.37 0.76 16 38 H 0.06 1.20 8.14 -51.91 -0.42 0.77 16 39 H 0.06 1.18 8.14 -51.91 -0.42 0.75 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 41 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.10 7.10 -51.93 -0.37 0.73 16 44 H 0.10 0.96 7.50 -51.93 -0.39 0.57 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -30.59 370.02 -11.81 -42.40 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.37 Total: 2.49 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -2.53 Total: -28.92 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.16 Total: -32.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.30 Total: -5.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.59 -11.81 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352828440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.697 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds