Wall clock time and date at job start Tue Mar 31 2020 09:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46627 * 2 1 4 4 C 1.50693 * 109.47222 * 119.99814 * 2 1 3 5 5 C 1.38243 * 120.00213 * 79.72953 * 4 2 1 6 6 C 1.38225 * 120.00162 * 179.78610 * 5 4 2 7 7 C 1.38236 * 120.00107 * 0.44063 * 6 5 4 8 8 C 1.38232 * 120.00040 * 359.81424 * 7 6 5 9 9 C 1.38237 * 119.99998 * 359.97438 * 8 7 6 10 10 N 1.46899 * 109.47079 * 239.99940 * 2 1 3 11 11 C 1.46901 * 110.99998 * 59.99540 * 10 2 1 12 12 C 1.53004 * 109.47102 * 60.77381 * 11 10 2 13 13 C 1.52999 * 109.47594 * 174.60410 * 12 11 10 14 14 S 1.80994 * 109.47192 * 179.97438 * 13 12 11 15 15 C 1.76207 * 99.99811 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99747 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00262 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99691 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46970 * 59.99908 * 19 17 15 21 21 H 1.48500 * 109.46836 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46711 * 300.00053 * 19 17 15 23 23 C 1.46897 * 111.00205 * 183.95137 * 10 2 1 24 24 C 1.53001 * 117.49891 * 182.51060 * 23 10 2 25 25 C 1.52999 * 117.49844 * 113.88580 * 23 10 2 26 26 H 1.08997 * 109.47631 * 60.00012 * 1 2 3 27 27 H 1.08999 * 109.47108 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47165 * 299.99775 * 1 2 3 29 29 H 1.08003 * 119.99542 * 359.97438 * 5 4 2 30 30 H 1.08003 * 119.99815 * 180.27050 * 6 5 4 31 31 H 1.08004 * 119.99877 * 179.82970 * 7 6 5 32 32 H 1.07997 * 120.00294 * 180.02562 * 8 7 6 33 33 H 1.07993 * 120.00347 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47819 * 180.77159 * 11 10 2 35 35 H 1.09002 * 109.47344 * 300.77825 * 11 10 2 36 36 H 1.09004 * 109.47146 * 294.60595 * 12 11 10 37 37 H 1.09001 * 109.47213 * 54.60253 * 12 11 10 38 38 H 1.09004 * 109.47024 * 300.00258 * 13 12 11 39 39 H 1.09001 * 109.46969 * 59.99694 * 13 12 11 40 40 H 0.96997 * 119.99643 * 179.97438 * 18 17 15 41 41 H 1.08998 * 115.56061 * 328.19540 * 23 10 2 42 42 H 1.09004 * 117.49983 * 145.02458 * 24 23 10 43 43 H 1.08996 * 117.50010 * 0.02562 * 24 23 10 44 44 H 1.09005 * 117.49752 * 0.02562 * 25 23 10 45 45 H 1.09000 * 117.49670 * 214.98269 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.0616 -2.0920 1.2675 6 6 2.5265 -2.7435 2.3944 7 6 2.9537 -2.0136 3.4879 8 6 2.9196 -0.6321 3.4529 9 6 2.4588 0.0195 2.3242 10 7 2.0197 -0.6925 -1.1994 11 6 1.5486 -0.0265 -2.4211 12 6 2.0747 1.4099 -2.4541 13 6 1.6979 2.0606 -3.7866 14 16 2.3197 3.7600 -3.8253 15 6 1.7601 4.2542 -5.4213 16 1 1.2097 3.5604 -6.0393 17 6 2.0268 5.5353 -5.8843 18 7 2.6981 6.3808 -5.1312 19 14 1.4329 6.0595 -7.5761 20 1 -0.0474 5.9578 -7.6345 21 1 1.8437 7.4635 -7.8318 22 1 2.0311 5.1736 -8.6070 23 6 3.4851 -0.7945 -1.1871 24 6 4.1585 -1.4400 -2.3998 25 6 4.0949 -2.1928 -1.0693 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7239 -2.6622 0.4147 30 1 2.5533 -3.8228 2.4217 31 1 3.3144 -2.5227 4.3695 32 1 3.2538 -0.0619 4.3070 33 1 2.4325 1.0988 2.2967 34 1 1.9141 -0.5673 -3.2940 35 1 0.4587 -0.0144 -2.4312 36 1 1.6332 1.9775 -1.6349 37 1 3.1594 1.4021 -2.3475 38 1 2.1394 1.4930 -4.6058 39 1 0.6132 2.0684 -3.8932 40 1 2.8847 7.2759 -5.4549 41 1 4.0095 0.0262 -0.6978 42 1 5.1261 -1.0441 -2.7083 43 1 3.5143 -1.7886 -3.2070 44 1 3.4087 -3.0370 -1.0013 45 1 5.0206 -2.2919 -0.5023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352828440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:14 Heat of formation + Delta-G solvation = 28.453074 kcal Electronic energy + Delta-G solvation = -22533.780653 eV Core-core repulsion = 19449.073763 eV Total energy + Delta-G solvation = -3084.706891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94308 -39.15096 -36.35228 -34.67122 -34.51150 -31.74590 -31.53327 -29.75407 -27.88643 -26.80947 -24.31414 -23.45895 -23.13463 -22.92032 -21.98961 -20.09696 -19.54443 -18.13936 -17.08734 -16.90864 -16.73923 -16.32757 -16.18156 -15.65872 -15.63084 -15.01935 -14.85726 -14.68187 -14.19007 -13.91814 -13.75181 -13.57319 -13.36128 -13.23229 -12.94824 -12.86394 -12.78791 -12.57987 -12.54264 -12.41879 -12.29516 -11.83044 -11.74588 -11.54534 -11.37829 -11.24971 -11.14432 -10.99045 -10.36555 -9.70078 -9.50872 -9.21896 -8.68767 -8.38492 -6.15237 0.53254 0.62578 1.30057 1.39576 1.46437 1.74643 2.27515 2.72551 2.95597 2.98443 3.03570 3.30440 3.71606 3.94040 4.06105 4.06831 4.10276 4.21203 4.25647 4.25807 4.29899 4.37823 4.39612 4.47370 4.56719 4.67597 4.72169 4.74553 4.79218 4.83414 4.89008 4.94208 5.03300 5.11001 5.13063 5.20251 5.21426 5.29166 5.35218 5.37916 5.39958 5.65842 5.72796 5.78130 6.08678 6.16590 6.21628 6.23465 7.03455 8.70661 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.002854 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.416667 B = 9809.567727 C =10162.720194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.119 3.881 3 H 0.038 0.962 4 C -0.081 4.081 5 C -0.090 4.090 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.130 4.130 9 C -0.134 4.134 10 N -0.489 5.489 11 C 0.065 3.935 12 C -0.114 4.114 13 C -0.082 4.082 14 S -0.205 6.205 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.014 3.986 18 N -0.909 5.909 19 Si 0.994 3.006 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.264 1.264 23 C 0.002 3.998 24 C -0.178 4.178 25 C -0.142 4.142 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -20.203 14.426 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 H 0.055 0.945 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.153 4.153 10 N -0.211 5.211 11 C -0.064 4.064 12 C -0.155 4.155 13 C -0.231 4.231 14 S 0.023 5.977 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.190 4.190 18 N -0.545 5.545 19 Si 0.815 3.185 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.107 4.107 24 C -0.216 4.216 25 C -0.179 4.179 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.443 -19.914 15.231 25.075 hybrid contribution -0.414 1.184 -1.854 2.238 sum -0.857 -18.729 13.377 23.032 Atomic orbital electron populations 1.21837 0.92612 1.02940 1.02150 1.20558 0.96151 0.94507 0.87691 0.94453 1.19735 0.99457 0.94557 0.94398 1.21056 0.98271 0.93461 0.98065 1.21421 0.99117 1.00805 0.93327 1.21414 0.99886 0.94026 0.99249 1.21302 1.00097 0.95291 0.98132 1.21186 1.00094 0.99904 0.94082 1.62194 1.07655 1.50011 1.01270 1.22278 1.00849 0.90445 0.92856 1.21802 1.00990 0.97643 0.95017 1.23109 1.02270 0.97040 1.00699 1.84665 1.75599 1.11747 1.25652 1.23000 1.41680 1.01778 1.02013 0.90881 1.26086 0.94717 0.95386 1.02846 1.70156 1.38709 1.06728 1.38910 0.85072 0.78995 0.77500 0.76900 1.18836 1.19986 1.18883 1.22213 0.87770 0.96790 1.03926 1.23114 1.01881 1.04293 0.92300 1.23046 1.01794 0.94475 0.98608 0.92188 0.91150 0.91744 0.85413 0.84389 0.84351 0.84907 0.86697 0.89953 0.89386 0.92389 0.92571 0.91961 0.91820 0.91993 0.91226 0.88914 0.88256 0.87751 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.93 71.98 0.64 -2.23 16 2 C 0.12 2.74 1.85 44.17 0.08 2.82 16 3 H 0.04 1.01 6.30 -2.39 -0.02 1.00 16 4 C -0.08 -1.74 4.05 -19.87 -0.08 -1.82 16 5 C -0.09 -1.72 7.65 22.27 0.17 -1.55 16 6 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 7 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 8 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 9 C -0.13 -2.84 9.67 22.27 0.22 -2.62 16 10 N -0.49 -11.16 4.08 -850.27 -3.47 -14.63 16 11 C 0.06 1.64 4.80 86.30 0.41 2.05 16 12 C -0.11 -3.71 4.56 30.60 0.14 -3.57 16 13 C -0.08 -3.29 5.67 71.98 0.41 -2.89 16 14 S -0.21 -11.09 21.44 -56.49 -1.21 -12.31 16 15 C -0.54 -31.35 9.50 67.95 0.65 -30.70 16 16 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 17 C 0.01 0.83 5.49 84.86 0.47 1.30 16 18 N -0.91 -55.53 13.22 21.65 0.29 -55.24 16 19 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 C 0.00 0.04 2.89 44.92 0.13 0.17 16 24 C -0.18 -3.81 9.72 30.60 0.30 -3.51 16 25 C -0.14 -2.68 9.16 30.60 0.28 -2.40 16 26 H 0.06 1.30 6.39 -2.39 -0.02 1.29 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.13 2.39 7.15 -2.91 -0.02 2.37 16 30 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.11 2.40 8.04 -2.91 -0.02 2.38 16 34 H 0.08 2.02 6.65 -2.39 -0.02 2.01 16 35 H 0.09 2.09 6.26 -2.39 -0.01 2.07 16 36 H 0.06 1.96 6.72 -2.38 -0.02 1.95 16 37 H 0.06 1.94 7.08 -2.39 -0.02 1.93 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.07 1.88 8.00 -2.39 -0.02 1.86 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.10 2.09 7.10 -2.39 -0.02 2.08 16 44 H 0.10 1.83 7.50 -2.38 -0.02 1.82 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.31 370.02 3.06 -63.25 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.95 Total: 23.42 kcal Atomic # 6 Polarization: -55.22 SS G_CDS: 4.48 Total: -50.74 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -3.18 Total: -69.87 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -11.09 SS G_CDS: -1.21 Total: -12.31 kcal Total: -66.31 3.06 -63.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352828440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.700 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds