Wall clock time and date at job start Tue Mar 31 2020 08:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21283 * 120.00231 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99983 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47502 * 300.00331 * 16 14 13 18 18 C 1.52999 * 109.46760 * 300.00154 * 17 16 14 19 19 C 1.52996 * 109.47053 * 299.99125 * 18 17 16 20 20 O 1.42900 * 109.47165 * 180.02562 * 19 18 17 21 21 C 1.42901 * 113.99637 * 90.00756 * 20 19 18 22 22 F 1.39905 * 109.47100 * 299.99667 * 21 20 19 23 23 F 1.39898 * 109.47447 * 59.99772 * 21 20 19 24 24 C 1.53003 * 109.46623 * 60.00791 * 19 18 17 25 25 C 1.53000 * 109.47502 * 180.02562 * 16 14 13 26 26 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 27 27 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 29 29 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 30 30 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 33 33 H 1.09004 * 109.47259 * 60.00396 * 16 14 13 34 34 H 1.09006 * 109.46676 * 59.99918 * 17 16 14 35 35 H 1.08996 * 109.47038 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46618 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47605 * 60.00029 * 18 17 16 38 38 H 1.08996 * 109.47653 * 300.00875 * 19 18 17 39 39 H 1.09002 * 109.47250 * 180.02562 * 21 20 19 40 40 H 1.09010 * 109.47127 * 179.97438 * 24 19 18 41 41 H 1.08996 * 109.47561 * 59.99655 * 24 19 18 42 42 H 1.08996 * 109.47380 * 180.02562 * 25 16 14 43 43 H 1.09004 * 109.47095 * 300.00670 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5600 -0.3407 -0.7622 11 1 6.3799 0.9274 -2.8214 12 1 6.5537 2.0834 -0.6967 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6320 0.4345 16 6 0.0362 3.3375 2.6550 17 6 0.0797 2.3202 3.7970 18 6 -0.8908 1.1758 3.4977 19 6 -2.3097 1.7322 3.3643 20 8 -3.2162 0.6633 3.0853 21 6 -3.7736 0.0546 4.2519 22 9 -2.7446 -0.4718 5.0402 23 9 -4.4795 1.0136 4.9863 24 6 -2.3532 2.7494 2.2222 25 6 -1.3830 3.8934 2.5217 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.8296 -0.0660 -2.9471 32 1 2.2719 2.1230 1.9979 33 1 0.7275 4.1528 2.8682 34 1 1.0906 1.9238 3.8921 35 1 -0.2084 2.8072 4.7285 36 1 -0.8594 0.4508 4.3111 37 1 -0.6022 0.6889 2.5662 38 1 -2.5982 2.2191 4.2957 39 1 -4.4501 -0.7470 3.9555 40 1 -3.3643 3.1456 2.1268 41 1 -2.0647 2.2626 1.2907 42 1 -1.6714 4.3806 3.4530 43 1 -1.4145 4.6180 1.7080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354691875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:42 Heat of formation + Delta-G solvation = -218.903639 kcal Electronic energy + Delta-G solvation = -27207.222625 eV Core-core repulsion = 23114.807142 eV Total energy + Delta-G solvation = -4092.415483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.20254 -47.30425 -40.21967 -38.15230 -36.07549 -34.83951 -32.47107 -31.23246 -30.58562 -29.81142 -26.95207 -25.61438 -23.46554 -22.71241 -22.56240 -20.99460 -19.69683 -19.03816 -18.35846 -17.92126 -17.76995 -16.68026 -16.00295 -15.55177 -15.15602 -14.98641 -14.59446 -14.24518 -14.13166 -13.81263 -13.68681 -13.40205 -13.17893 -13.06037 -12.75258 -12.64994 -12.31291 -12.10696 -11.97734 -11.62818 -11.51796 -11.32245 -11.20056 -11.01955 -10.84283 -10.81733 -10.57945 -10.40597 -10.29012 -10.02560 -9.83269 -9.51262 -9.01925 -8.71495 -8.46684 -7.76051 -6.11223 -4.20566 2.92891 3.24197 3.31382 3.33191 3.44933 3.54677 4.12999 4.36962 4.39695 4.57188 4.76907 4.79265 5.00196 5.12262 5.16555 5.19979 5.32056 5.43956 5.54855 5.62902 5.76163 5.90137 5.99086 6.05259 6.19528 6.23285 6.33208 6.43008 6.52912 6.57156 6.69493 6.82881 7.11511 7.25101 7.42034 7.51805 7.64323 7.76675 7.93297 8.21352 8.72051 8.80341 9.19978 9.47340 10.93832 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.003814 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.767109 B = 7338.710927 C = 7653.939731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.507 3.493 15 O -0.544 6.544 16 C -0.118 4.118 17 C -0.104 4.104 18 C -0.154 4.154 19 C 0.085 3.915 20 O -0.375 6.375 21 C 0.402 3.598 22 F -0.209 7.209 23 F -0.213 7.213 24 C -0.129 4.129 25 C -0.089 4.089 26 H 0.048 0.952 27 H 0.021 0.979 28 H 0.047 0.953 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.163 0.837 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.061 0.939 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 1.938 13.929 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.424 6.424 16 C -0.139 4.139 17 C -0.142 4.142 18 C -0.192 4.192 19 C 0.028 3.972 20 O -0.297 6.297 21 C 0.310 3.690 22 F -0.191 7.191 23 F -0.195 7.195 24 C -0.166 4.166 25 C -0.127 4.127 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.180 0.820 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.928 1.765 12.892 17.652 hybrid contribution 1.441 -0.006 0.675 1.592 sum -10.487 1.759 13.567 17.238 Atomic orbital electron populations 1.21950 0.98309 0.98076 1.01500 1.21921 0.92637 0.99830 1.02132 1.18755 0.94035 0.89165 0.81153 0.93406 1.21245 0.90875 1.38815 1.06301 0.92203 1.24882 0.98490 0.94870 0.95411 1.69897 1.35053 1.37507 1.09464 0.86481 0.85044 0.78408 0.77357 1.20584 1.21104 1.19909 1.46511 1.14736 1.55955 1.18335 1.20213 0.82601 0.79213 0.88760 1.90588 1.50955 1.60149 1.40693 1.21466 0.98828 0.98918 0.94730 1.21444 1.00090 0.95469 0.97195 1.22322 0.94017 0.98639 1.04183 1.22398 0.88392 0.86795 0.99583 1.88482 1.61385 1.50948 1.28838 1.23175 0.82346 0.86398 0.77115 1.93053 1.62494 1.86724 1.76824 1.93039 1.78985 1.67914 1.79532 1.21862 0.99500 0.95186 1.00039 1.21209 0.92494 0.97411 1.01584 0.93243 0.96034 0.93431 0.88435 0.95212 0.92615 0.78152 0.88877 0.90743 0.91321 0.90947 0.89417 0.91608 0.82014 0.91857 0.87065 0.92012 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.66 2.24 -69.08 -0.16 6.50 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.91 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -24.57 11.28 55.43 0.63 -23.95 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.05 4.91 -54.93 -0.27 -14.32 16 14 C 0.51 9.35 4.48 -10.99 -0.05 9.30 16 15 O -0.54 -11.74 10.79 5.56 0.06 -11.68 16 16 C -0.12 -1.60 3.01 -91.77 -0.28 -1.88 16 17 C -0.10 -1.26 5.36 -26.73 -0.14 -1.40 16 18 C -0.15 -2.12 5.17 -26.73 -0.14 -2.26 16 19 C 0.08 1.12 2.40 -26.73 -0.06 1.06 16 20 O -0.38 -4.98 10.29 -35.23 -0.36 -5.34 16 21 C 0.40 4.08 6.26 101.05 0.63 4.72 16 22 F -0.21 -2.42 15.46 2.25 0.03 -2.38 16 23 F -0.21 -2.33 16.63 2.25 0.04 -2.30 16 24 C -0.13 -1.82 5.28 -26.75 -0.14 -1.96 16 25 C -0.09 -1.14 5.09 -26.75 -0.14 -1.28 16 26 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.99 3.21 -51.93 -0.17 0.83 16 29 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.76 7.96 -40.82 -0.32 6.44 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.87 7.57 -51.93 -0.39 0.48 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.95 6.50 -51.93 -0.34 0.61 16 37 H 0.09 1.47 4.83 -51.93 -0.25 1.22 16 38 H 0.07 0.80 7.20 -51.93 -0.37 0.43 16 39 H 0.16 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.11 1.97 5.51 -51.93 -0.29 1.68 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -29.76 332.80 -6.74 -36.50 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.16 Total: 8.69 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.69 Total: -5.72 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.36 Total: -38.26 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.30 Total: -17.02 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.68 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.76 -6.74 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354691875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.407 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds