Wall clock time and date at job start Tue Mar 31 2020 08:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21283 * 120.00231 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99983 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47502 * 300.00331 * 16 14 13 18 18 C 1.52999 * 109.46760 * 300.00154 * 17 16 14 19 19 C 1.52996 * 109.47053 * 299.99125 * 18 17 16 20 20 O 1.42900 * 109.47165 * 180.02562 * 19 18 17 21 21 C 1.42901 * 113.99637 * 90.00756 * 20 19 18 22 22 F 1.39905 * 109.47100 * 299.99667 * 21 20 19 23 23 F 1.39898 * 109.47447 * 59.99772 * 21 20 19 24 24 C 1.53003 * 109.46623 * 60.00791 * 19 18 17 25 25 C 1.53000 * 109.47502 * 180.02562 * 16 14 13 26 26 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 27 27 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 29 29 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 30 30 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 33 33 H 1.09004 * 109.47259 * 60.00396 * 16 14 13 34 34 H 1.09006 * 109.46676 * 59.99918 * 17 16 14 35 35 H 1.08996 * 109.47038 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46618 * 179.97438 * 18 17 16 37 37 H 1.08996 * 109.47605 * 60.00029 * 18 17 16 38 38 H 1.08996 * 109.47653 * 300.00875 * 19 18 17 39 39 H 1.09002 * 109.47250 * 180.02562 * 21 20 19 40 40 H 1.09010 * 109.47127 * 179.97438 * 24 19 18 41 41 H 1.08996 * 109.47561 * 59.99655 * 24 19 18 42 42 H 1.08996 * 109.47380 * 180.02562 * 25 16 14 43 43 H 1.09004 * 109.47095 * 300.00670 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5600 -0.3407 -0.7622 11 1 6.3799 0.9274 -2.8214 12 1 6.5537 2.0834 -0.6967 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6320 0.4345 16 6 0.0362 3.3375 2.6550 17 6 0.0797 2.3202 3.7970 18 6 -0.8908 1.1758 3.4977 19 6 -2.3097 1.7322 3.3643 20 8 -3.2162 0.6633 3.0853 21 6 -3.7736 0.0546 4.2519 22 9 -2.7446 -0.4718 5.0402 23 9 -4.4795 1.0136 4.9863 24 6 -2.3532 2.7494 2.2222 25 6 -1.3830 3.8934 2.5217 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.8296 -0.0660 -2.9471 32 1 2.2719 2.1230 1.9979 33 1 0.7275 4.1528 2.8682 34 1 1.0906 1.9238 3.8921 35 1 -0.2084 2.8072 4.7285 36 1 -0.8594 0.4508 4.3111 37 1 -0.6022 0.6889 2.5662 38 1 -2.5982 2.2191 4.2957 39 1 -4.4501 -0.7470 3.9555 40 1 -3.3643 3.1456 2.1268 41 1 -2.0647 2.2626 1.2907 42 1 -1.6714 4.3806 3.4530 43 1 -1.4145 4.6180 1.7080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354691875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:42 Heat of formation + Delta-G solvation = -238.170952 kcal Electronic energy + Delta-G solvation = -27208.058118 eV Core-core repulsion = 23114.807142 eV Total energy + Delta-G solvation = -4093.250977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.02178 -48.12851 -41.52656 -39.35125 -37.40430 -36.46024 -34.30717 -32.96758 -31.67205 -31.05264 -28.85439 -26.49786 -25.19972 -23.99864 -23.67848 -22.29719 -21.42694 -20.53469 -19.31207 -18.82003 -18.60547 -18.37039 -17.36483 -17.02865 -16.80043 -16.21877 -15.98763 -15.59062 -15.11965 -15.00608 -14.65846 -14.64746 -14.51154 -14.29168 -14.19132 -13.86754 -13.59315 -13.41763 -13.16464 -13.14815 -12.96755 -12.88292 -12.72276 -12.66172 -12.37488 -12.15186 -12.08754 -11.93003 -11.68742 -11.52853 -11.22180 -11.01778 -10.84434 -10.53480 -10.16842 -9.50357 -8.14376 -6.31579 1.44576 1.45103 1.55386 2.00143 2.11676 2.38313 2.72733 2.78916 3.14904 3.60886 3.63065 3.80428 3.88462 3.93847 4.05155 4.14158 4.25663 4.39223 4.47011 4.49123 4.54133 4.62665 4.76560 4.79449 4.88728 4.98763 5.04951 5.07094 5.18901 5.23021 5.31244 5.35312 5.45873 5.52588 5.60267 5.68887 5.81753 5.85377 5.99219 6.21830 6.78214 7.11811 7.36680 7.73027 8.90575 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.003814 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.767109 B = 7338.710927 C = 7653.939731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.117 4.117 3 C 0.281 3.719 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.501 3.499 15 O -0.580 6.580 16 C -0.108 4.108 17 C -0.100 4.100 18 C -0.153 4.153 19 C 0.086 3.914 20 O -0.397 6.397 21 C 0.398 3.602 22 F -0.217 7.217 23 F -0.217 7.217 24 C -0.128 4.128 25 C -0.087 4.087 26 H 0.022 0.978 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.400 0.600 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.205 0.795 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 2.600 16.811 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.156 4.156 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.356 5.356 14 C 0.289 3.711 15 O -0.461 6.461 16 C -0.129 4.129 17 C -0.138 4.138 18 C -0.190 4.190 19 C 0.030 3.970 20 O -0.319 6.319 21 C 0.307 3.693 22 F -0.199 7.199 23 F -0.199 7.199 24 C -0.166 4.166 25 C -0.125 4.125 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.221 0.779 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.667 2.441 15.816 19.805 hybrid contribution 1.263 -0.214 -0.237 1.303 sum -10.404 2.227 15.579 18.866 Atomic orbital electron populations 1.21801 0.97007 0.98785 1.00864 1.21745 0.93678 0.99391 1.00830 1.18270 0.93324 0.88961 0.81733 0.98643 1.21609 0.91697 1.38576 1.06627 0.91140 1.25763 1.03151 0.94491 0.95095 1.70059 1.36971 1.38360 1.10004 0.85406 0.79370 0.78838 0.77078 1.19799 1.21385 1.18843 1.46280 1.15894 1.56310 1.17156 1.21181 0.81354 0.78321 0.90254 1.90595 1.51731 1.61123 1.42633 1.21502 0.99822 0.99584 0.92019 1.21496 1.00060 0.94513 0.97695 1.22290 0.94894 0.99376 1.02458 1.22361 0.88235 0.86753 0.99641 1.88470 1.61512 1.51134 1.30763 1.23806 0.82405 0.86895 0.76188 1.93032 1.63136 1.86746 1.77025 1.93028 1.78921 1.68319 1.79600 1.21780 1.00230 0.95852 0.98695 1.21251 0.91546 0.96674 1.03007 0.95890 0.94504 0.92129 0.91460 0.94503 0.92739 0.76544 0.86162 0.90189 0.87783 0.90301 0.93010 0.89738 0.77904 0.91144 0.91204 0.88230 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.51 71.98 0.61 -5.25 16 2 C -0.12 -5.85 5.45 30.60 0.17 -5.68 16 3 C 0.28 14.30 2.24 44.24 0.10 14.40 16 4 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 5 C -0.55 -28.83 8.73 25.60 0.22 -28.60 16 6 H 0.07 3.47 7.74 -2.92 -0.02 3.45 16 7 C 0.01 0.80 5.30 84.66 0.45 1.25 16 8 N -0.92 -52.74 11.28 21.45 0.24 -52.50 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 N -0.71 -28.20 4.91 -446.09 -2.19 -30.39 16 14 C 0.50 18.50 4.48 87.66 0.39 18.89 16 15 O -0.58 -26.03 10.79 -3.04 -0.03 -26.06 16 16 C -0.11 -2.68 3.01 -11.54 -0.03 -2.72 16 17 C -0.10 -2.08 5.36 30.60 0.16 -1.92 16 18 C -0.15 -3.92 5.17 30.59 0.16 -3.76 16 19 C 0.09 2.12 2.40 30.59 0.07 2.20 16 20 O -0.40 -10.01 10.29 -148.98 -1.53 -11.55 16 21 C 0.40 7.18 6.26 113.37 0.71 7.89 16 22 F -0.22 -4.55 15.46 44.97 0.70 -3.86 16 23 F -0.22 -4.21 16.63 44.97 0.75 -3.47 16 24 C -0.13 -3.52 5.28 30.58 0.16 -3.35 16 25 C -0.09 -2.03 5.09 30.58 0.16 -1.87 16 26 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 2.63 3.21 -2.39 -0.01 2.62 16 29 H 0.07 3.78 5.94 -2.39 -0.01 3.76 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.40 13.58 7.96 -92.71 -0.74 12.85 16 33 H 0.12 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.08 1.60 7.57 -2.38 -0.02 1.58 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.90 6.50 -2.38 -0.02 1.89 16 37 H 0.05 1.71 4.83 -2.39 -0.01 1.70 16 38 H 0.08 1.76 7.20 -2.39 -0.02 1.75 16 39 H 0.20 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.07 2.55 5.51 -2.39 -0.01 2.53 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 Total: -1.00 -68.07 332.80 3.58 -64.49 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.30 Total: 27.68 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 3.33 Total: -8.52 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -1.95 Total: -82.88 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.57 Total: -37.60 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 1.44 Total: -7.33 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.07 3.58 -64.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354691875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.681 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds