Wall clock time and date at job start Tue Mar 31 2020 09:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50705 * 120.00119 * 2 1 4 4 N 1.46494 * 109.47526 * 124.02668 * 3 2 1 5 5 C 1.46497 * 119.99967 * 265.76546 * 4 3 2 6 6 C 1.50701 * 109.47374 * 275.52117 * 5 4 3 7 7 H 1.07999 * 119.99732 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99850 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00055 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47142 * 90.00590 * 10 8 6 12 12 H 1.48506 * 109.47216 * 210.00417 * 10 8 6 13 13 H 1.48499 * 109.47231 * 330.00781 * 10 8 6 14 14 C 1.34779 * 120.00261 * 85.76547 * 4 3 2 15 15 O 1.21283 * 119.99868 * 355.43389 * 14 4 3 16 16 C 1.50697 * 120.00106 * 175.71385 * 14 4 3 17 17 H 1.09003 * 109.47021 * 34.45164 * 16 14 4 18 18 C 1.52999 * 109.46905 * 274.45355 * 16 14 4 19 19 C 1.53001 * 109.47244 * 154.45050 * 16 14 4 20 20 C 1.50700 * 109.47124 * 184.99571 * 19 16 14 21 21 C 1.38216 * 120.01455 * 264.73320 * 20 19 16 22 22 C 1.38227 * 120.02136 * 179.72626 * 21 20 19 23 23 C 1.38268 * 120.05380 * 0.54570 * 22 21 20 24 24 C 1.38179 * 120.02449 * 359.72625 * 23 22 21 25 25 C 1.38445 * 120.00979 * 85.00041 * 20 19 16 26 26 F 1.35096 * 120.02233 * 359.97438 * 25 20 19 27 27 H 1.08000 * 120.00428 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00292 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00428 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47028 * 4.02144 * 3 2 1 31 31 H 1.09006 * 109.47125 * 244.03077 * 3 2 1 32 32 H 1.09004 * 109.47055 * 35.51927 * 5 4 3 33 33 H 1.08998 * 109.47438 * 155.52078 * 5 4 3 34 34 H 0.97000 * 119.99795 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47072 * 301.65406 * 18 16 14 36 36 H 1.08999 * 109.47506 * 61.65987 * 18 16 14 37 37 H 1.09000 * 109.46965 * 181.65790 * 18 16 14 38 38 H 1.09001 * 109.46892 * 305.00164 * 19 16 14 39 39 H 1.09002 * 109.46774 * 64.99929 * 19 16 14 40 40 H 1.07997 * 119.98760 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.96952 * 180.25309 * 22 21 20 42 42 H 1.07997 * 119.98922 * 179.75301 * 23 22 21 43 43 H 1.07994 * 120.00964 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9770 1.3417 1.1446 5 6 2.5547 1.9695 2.3991 6 6 2.8006 3.4545 2.3254 7 1 3.2283 3.8873 1.4332 8 6 2.4786 4.2606 3.3966 9 7 1.9573 3.7336 4.4830 10 14 2.7841 6.1012 3.3054 11 1 1.5813 6.7760 2.7548 12 1 3.0656 6.6243 4.6665 13 1 3.9483 6.3666 2.4225 14 6 4.2060 0.7977 1.0437 15 8 4.5260 0.2055 0.0348 16 6 5.1803 0.9198 2.1869 17 1 4.6378 0.8870 3.1317 18 6 5.9322 2.2477 2.0764 19 6 6.1790 -0.2380 2.1317 20 6 7.0759 -0.1857 3.3417 21 6 8.3067 0.4383 3.2635 22 6 9.1271 0.4912 4.3747 23 6 8.7224 -0.0896 5.5625 24 6 7.4948 -0.7189 5.6414 25 6 6.6696 -0.7676 4.5304 26 9 5.4688 -1.3820 4.6065 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3573 2.1324 0.0721 31 1 2.6349 1.3948 -0.9240 32 1 1.4923 1.7846 2.5583 33 1 3.1249 1.5474 3.2266 34 1 1.7311 4.3007 5.2367 35 1 6.4509 2.2930 1.1188 36 1 5.2238 3.0733 2.1452 37 1 6.6576 2.3230 2.8864 38 1 5.6380 -1.1842 2.1209 39 1 6.7827 -0.1542 1.2281 40 1 8.6258 0.8881 2.3350 41 1 10.0869 0.9826 4.3138 42 1 9.3659 -0.0511 6.4289 43 1 7.1788 -1.1721 6.5693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359435637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:01 Heat of formation + Delta-G solvation = -48.670946 kcal Electronic energy + Delta-G solvation = -25423.484227 eV Core-core repulsion = 21769.219812 eV Total energy + Delta-G solvation = -3654.264415 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.69640 -39.63056 -38.78516 -35.59476 -34.62836 -33.34588 -32.14033 -30.70175 -30.36003 -27.50313 -26.46849 -25.87108 -23.18077 -22.68007 -22.57958 -20.90414 -19.55471 -18.00208 -17.41790 -16.59966 -16.48385 -16.23229 -15.73609 -15.47492 -15.31265 -14.73050 -14.48824 -14.22413 -13.99947 -13.50141 -13.20860 -13.15879 -12.94218 -12.44576 -12.43915 -12.16798 -12.06602 -11.67465 -11.55111 -11.43567 -11.30020 -11.01310 -10.88268 -10.85706 -10.84596 -10.63085 -10.31568 -10.14715 -9.72181 -9.16609 -8.88819 -8.83818 -8.53389 -8.49306 -7.72674 -6.18471 -4.25215 1.22154 1.25489 2.60551 3.21177 3.28860 3.30751 3.42718 3.61985 4.07200 4.32501 4.38226 4.75985 4.82299 4.97165 5.13978 5.21016 5.33460 5.35554 5.41662 5.51489 5.57815 5.62212 5.85066 5.92656 5.98692 6.07470 6.12306 6.21609 6.22158 6.25159 6.37240 6.39666 6.40655 6.50044 6.59298 6.80926 6.95167 6.96955 6.97964 7.10229 7.24406 7.55962 7.75138 8.05033 8.36242 8.78662 9.02581 9.41443 10.88214 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.005464 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.298797 B = 5123.455736 C = 6613.233155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.146 3.854 4 N -0.589 5.589 5 C 0.235 3.765 6 C -0.534 4.534 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.888 5.888 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.522 3.478 15 O -0.576 6.576 16 C -0.097 4.097 17 H 0.099 0.901 18 C -0.145 4.145 19 C -0.063 4.063 20 C -0.103 4.103 21 C -0.086 4.086 22 C -0.132 4.132 23 C -0.101 4.101 24 C -0.154 4.154 25 C 0.102 3.898 26 F -0.135 7.135 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.543 -6.496 0.072 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.022 3.978 4 N -0.318 5.318 5 C 0.116 3.884 6 C -0.573 4.573 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.526 5.526 10 Si 0.721 3.279 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.310 3.690 15 O -0.458 6.458 16 C -0.118 4.118 17 H 0.117 0.883 18 C -0.202 4.202 19 C -0.101 4.101 20 C -0.104 4.104 21 C -0.104 4.104 22 C -0.150 4.150 23 C -0.119 4.119 24 C -0.173 4.173 25 C 0.083 3.917 26 F -0.114 7.114 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.565 -6.751 -0.242 11.710 hybrid contribution -0.275 0.971 0.321 1.060 sum 9.289 -5.780 0.080 10.941 Atomic orbital electron populations 1.23761 0.95797 1.01479 1.02207 1.23396 0.96015 0.99476 0.98378 1.20394 0.92576 0.94722 0.90057 1.48221 1.12818 1.55684 1.15126 1.19513 0.96532 0.92661 0.79734 1.21433 1.42667 0.91958 1.01242 0.91966 1.24932 0.94791 0.98844 0.95149 1.69928 1.42107 1.35837 1.04776 0.86571 0.78788 0.85122 0.77463 1.20545 1.21079 1.19696 1.20435 0.82452 0.77818 0.88288 1.90574 1.78228 1.44240 1.32711 1.21164 0.95251 0.96361 0.99071 0.88332 1.21839 1.00756 0.96807 1.00800 1.20419 0.96130 0.98926 0.94635 1.20022 0.96497 0.99103 0.94753 1.20990 0.92691 0.97577 0.99174 1.21169 1.00209 1.00588 0.93032 1.20941 0.95475 0.97348 0.98115 1.21121 0.95288 1.02967 0.97911 1.17624 0.82146 0.97205 0.94752 1.91508 1.42686 1.80394 1.96801 0.88480 0.88987 0.87791 0.89750 0.90613 0.94785 0.93986 0.92524 0.93321 0.89047 0.92387 0.90785 0.89751 0.85036 0.85594 0.85410 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 14.32 29.02 0.42 -2.53 16 2 C -0.15 -2.65 9.82 -36.02 -0.35 -3.01 16 3 C 0.15 2.78 5.79 -5.19 -0.03 2.75 16 4 N -0.59 -12.57 2.45 -176.43 -0.43 -13.01 16 5 C 0.24 5.60 5.02 -5.19 -0.03 5.57 16 6 C -0.53 -13.50 7.56 -34.44 -0.26 -13.76 16 7 H 0.06 1.59 7.72 -52.49 -0.41 1.18 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -24.30 13.29 55.43 0.74 -23.57 16 10 Si 0.89 20.23 29.54 -169.99 -5.02 15.20 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.52 10.95 6.74 -10.99 -0.07 10.88 16 15 O -0.58 -12.87 15.90 5.56 0.09 -12.78 16 16 C -0.10 -1.83 2.09 -91.77 -0.19 -2.02 16 17 H 0.10 2.02 5.91 -51.93 -0.31 1.72 16 18 C -0.14 -2.58 8.87 37.16 0.33 -2.26 16 19 C -0.06 -1.03 4.05 -27.88 -0.11 -1.15 16 20 C -0.10 -1.51 4.56 -104.55 -0.48 -1.98 16 21 C -0.09 -1.06 8.33 -39.59 -0.33 -1.39 16 22 C -0.13 -1.40 10.04 -39.57 -0.40 -1.80 16 23 C -0.10 -1.07 10.04 -39.59 -0.40 -1.47 16 24 C -0.15 -1.92 10.03 -39.51 -0.40 -2.32 16 25 C 0.10 1.53 7.24 -39.42 -0.29 1.25 16 26 F -0.14 -2.27 16.57 2.25 0.04 -2.23 16 27 H 0.10 1.41 7.84 -52.49 -0.41 1.00 16 28 H 0.09 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.08 1.59 7.69 -51.93 -0.40 1.19 16 31 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16 32 H 0.03 0.87 8.11 -51.93 -0.42 0.44 16 33 H 0.04 1.05 5.69 -51.93 -0.30 0.76 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.88 6.08 -51.93 -0.32 1.57 16 37 H 0.06 0.94 6.42 -51.93 -0.33 0.60 16 38 H 0.07 1.26 7.79 -51.93 -0.40 0.85 16 39 H 0.08 1.32 7.94 -51.93 -0.41 0.91 16 40 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -28.60 362.62 -8.01 -36.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.20 Total: 5.92 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.68 Total: -11.61 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.30 Total: -36.57 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.60 -8.01 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.067 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds