Wall clock time and date at job start Tue Mar 31 2020 09:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50705 * 120.00119 * 2 1 4 4 N 1.46494 * 109.47526 * 124.02668 * 3 2 1 5 5 C 1.46497 * 119.99967 * 265.76546 * 4 3 2 6 6 C 1.50701 * 109.47374 * 275.52117 * 5 4 3 7 7 H 1.07999 * 119.99732 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99850 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00055 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47142 * 90.00590 * 10 8 6 12 12 H 1.48506 * 109.47216 * 210.00417 * 10 8 6 13 13 H 1.48499 * 109.47231 * 330.00781 * 10 8 6 14 14 C 1.34779 * 120.00261 * 85.76547 * 4 3 2 15 15 O 1.21283 * 119.99868 * 355.43389 * 14 4 3 16 16 C 1.50697 * 120.00106 * 175.71385 * 14 4 3 17 17 H 1.09003 * 109.47021 * 34.45164 * 16 14 4 18 18 C 1.52999 * 109.46905 * 274.45355 * 16 14 4 19 19 C 1.53001 * 109.47244 * 154.45050 * 16 14 4 20 20 C 1.50700 * 109.47124 * 184.99571 * 19 16 14 21 21 C 1.38216 * 120.01455 * 264.73320 * 20 19 16 22 22 C 1.38227 * 120.02136 * 179.72626 * 21 20 19 23 23 C 1.38268 * 120.05380 * 0.54570 * 22 21 20 24 24 C 1.38179 * 120.02449 * 359.72625 * 23 22 21 25 25 C 1.38445 * 120.00979 * 85.00041 * 20 19 16 26 26 F 1.35096 * 120.02233 * 359.97438 * 25 20 19 27 27 H 1.08000 * 120.00428 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00292 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00428 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47028 * 4.02144 * 3 2 1 31 31 H 1.09006 * 109.47125 * 244.03077 * 3 2 1 32 32 H 1.09004 * 109.47055 * 35.51927 * 5 4 3 33 33 H 1.08998 * 109.47438 * 155.52078 * 5 4 3 34 34 H 0.97000 * 119.99795 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47072 * 301.65406 * 18 16 14 36 36 H 1.08999 * 109.47506 * 61.65987 * 18 16 14 37 37 H 1.09000 * 109.46965 * 181.65790 * 18 16 14 38 38 H 1.09001 * 109.46892 * 305.00164 * 19 16 14 39 39 H 1.09002 * 109.46774 * 64.99929 * 19 16 14 40 40 H 1.07997 * 119.98760 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.96952 * 180.25309 * 22 21 20 42 42 H 1.07997 * 119.98922 * 179.75301 * 23 22 21 43 43 H 1.07994 * 120.00964 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9770 1.3417 1.1446 5 6 2.5547 1.9695 2.3991 6 6 2.8006 3.4545 2.3254 7 1 3.2283 3.8873 1.4332 8 6 2.4786 4.2606 3.3966 9 7 1.9573 3.7336 4.4830 10 14 2.7841 6.1012 3.3054 11 1 1.5813 6.7760 2.7548 12 1 3.0656 6.6243 4.6665 13 1 3.9483 6.3666 2.4225 14 6 4.2060 0.7977 1.0437 15 8 4.5260 0.2055 0.0348 16 6 5.1803 0.9198 2.1869 17 1 4.6378 0.8870 3.1317 18 6 5.9322 2.2477 2.0764 19 6 6.1790 -0.2380 2.1317 20 6 7.0759 -0.1857 3.3417 21 6 8.3067 0.4383 3.2635 22 6 9.1271 0.4912 4.3747 23 6 8.7224 -0.0896 5.5625 24 6 7.4948 -0.7189 5.6414 25 6 6.6696 -0.7676 4.5304 26 9 5.4688 -1.3820 4.6065 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3573 2.1324 0.0721 31 1 2.6349 1.3948 -0.9240 32 1 1.4923 1.7846 2.5583 33 1 3.1249 1.5474 3.2266 34 1 1.7311 4.3007 5.2367 35 1 6.4509 2.2930 1.1188 36 1 5.2238 3.0733 2.1452 37 1 6.6576 2.3230 2.8864 38 1 5.6380 -1.1842 2.1209 39 1 6.7827 -0.1542 1.2281 40 1 8.6258 0.8881 2.3350 41 1 10.0869 0.9826 4.3138 42 1 9.3659 -0.0511 6.4289 43 1 7.1788 -1.1721 6.5693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359435637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:00 Heat of formation + Delta-G solvation = -61.556692 kcal Electronic energy + Delta-G solvation = -25424.042995 eV Core-core repulsion = 21769.219812 eV Total energy + Delta-G solvation = -3654.823183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.87851 -41.17535 -39.90673 -37.21133 -36.10183 -35.00626 -33.87636 -31.82986 -31.36490 -29.38719 -27.74704 -27.42983 -25.00842 -24.03148 -23.63937 -22.10027 -20.93560 -19.67887 -18.51264 -18.47032 -18.07664 -17.39123 -17.32394 -16.63662 -16.47863 -16.36617 -16.19387 -15.57487 -15.09571 -14.95023 -14.71938 -14.39192 -14.19711 -14.08532 -13.87608 -13.55134 -13.42633 -13.19862 -13.01137 -12.96063 -12.73874 -12.66210 -12.48599 -12.27872 -12.14716 -12.05756 -11.85851 -11.79265 -11.58870 -10.75808 -10.56269 -10.27250 -9.84284 -9.56044 -9.49121 -8.18690 -6.32148 0.23643 0.31196 1.25852 1.41955 1.44020 1.53331 1.73155 2.35497 2.48156 2.72068 3.11698 3.38023 3.52456 3.78079 3.93294 3.96891 4.03996 4.14235 4.19258 4.22893 4.37006 4.42750 4.46092 4.57923 4.76136 4.77505 4.81839 4.86692 4.93178 4.99619 5.04819 5.10740 5.17976 5.24477 5.32124 5.41805 5.48581 5.53076 5.61260 5.64809 5.73496 5.90207 6.01749 6.05286 6.56028 6.80754 7.27706 7.40634 8.87584 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.005464 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.298797 B = 5123.455736 C = 6613.233155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.181 4.181 3 C 0.144 3.856 4 N -0.594 5.594 5 C 0.253 3.747 6 C -0.534 4.534 7 H 0.058 0.942 8 C 0.022 3.978 9 N -0.921 5.921 10 Si 0.954 3.046 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.516 3.484 15 O -0.591 6.591 16 C -0.092 4.092 17 H 0.075 0.925 18 C -0.134 4.134 19 C -0.052 4.052 20 C -0.122 4.122 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.093 4.093 24 C -0.160 4.160 25 C 0.066 3.934 26 F -0.157 7.157 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.267 0.733 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 -5.558 0.348 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.022 3.978 4 N -0.323 5.323 5 C 0.132 3.868 6 C -0.573 4.573 7 H 0.077 0.923 8 C -0.178 4.178 9 N -0.560 5.560 10 Si 0.779 3.221 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.190 1.190 14 C 0.306 3.694 15 O -0.473 6.473 16 C -0.113 4.113 17 H 0.093 0.907 18 C -0.191 4.191 19 C -0.090 4.090 20 C -0.123 4.123 21 C -0.109 4.109 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.179 4.179 25 C 0.048 3.952 26 F -0.136 7.136 27 H 0.123 0.877 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.338 -5.820 0.016 12.745 hybrid contribution -0.829 0.634 0.242 1.071 sum 10.509 -5.186 0.257 11.722 Atomic orbital electron populations 1.24022 0.94944 1.03055 0.98389 1.23198 0.96782 0.98128 1.01884 1.20483 0.92390 0.95923 0.89049 1.48243 1.13538 1.55542 1.14957 1.19122 0.94877 0.92322 0.80447 1.21548 1.42164 0.92524 1.01026 0.92342 1.25644 0.94537 1.02883 0.94745 1.70035 1.43196 1.37339 1.05456 0.85612 0.78840 0.80139 0.77493 1.20122 1.20828 1.19002 1.20849 0.82588 0.77267 0.88710 1.90551 1.78465 1.44831 1.33491 1.21118 0.95281 0.98161 0.96765 0.90697 1.21731 1.00281 0.94877 1.02254 1.20242 0.95727 0.96852 0.96136 1.19959 0.97479 1.01005 0.93866 1.21250 0.91840 0.97066 1.00706 1.21612 1.01017 0.99371 0.92097 1.21412 0.94740 0.95479 0.99415 1.21412 0.95767 1.03124 0.97576 1.18066 0.82226 0.98768 0.96190 1.91445 1.44127 1.81043 1.96974 0.87701 0.86451 0.88637 0.89771 0.90850 0.96779 0.95574 0.92434 0.92007 0.91854 0.90543 0.92558 0.89145 0.83454 0.82054 0.81853 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.83 14.32 67.79 0.97 -3.86 16 2 C -0.18 -6.31 9.82 25.66 0.25 -6.05 16 3 C 0.14 5.62 5.79 85.64 0.50 6.11 16 4 N -0.59 -26.25 2.45 -830.50 -2.04 -28.29 16 5 C 0.25 12.52 5.02 85.63 0.43 12.95 16 6 C -0.53 -27.46 7.56 25.60 0.19 -27.26 16 7 H 0.06 3.01 7.72 -2.91 -0.02 2.99 16 8 C 0.02 1.16 5.46 84.65 0.46 1.62 16 9 N -0.92 -51.11 13.29 21.45 0.28 -50.83 16 10 Si 0.95 41.28 29.54 68.60 2.03 43.30 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 13 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 14 C 0.52 22.42 6.74 87.66 0.59 23.02 16 15 O -0.59 -27.03 15.90 -3.04 -0.05 -27.07 16 16 C -0.09 -3.58 2.09 -11.54 -0.02 -3.60 16 17 H 0.07 3.27 5.91 -2.39 -0.01 3.26 16 18 C -0.13 -4.78 8.87 71.98 0.64 -4.15 16 19 C -0.05 -1.74 4.05 29.85 0.12 -1.62 16 20 C -0.12 -3.57 4.56 -19.82 -0.09 -3.66 16 21 C -0.09 -2.04 8.33 22.26 0.19 -1.85 16 22 C -0.12 -2.17 10.04 22.27 0.22 -1.94 16 23 C -0.09 -1.66 10.04 22.26 0.22 -1.43 16 24 C -0.16 -3.79 10.03 22.31 0.22 -3.57 16 25 C 0.07 2.03 7.24 22.38 0.16 2.19 16 26 F -0.16 -5.60 16.57 44.97 0.75 -4.85 16 27 H 0.10 2.90 7.84 -2.91 -0.02 2.87 16 28 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.10 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.08 3.22 7.69 -2.39 -0.02 3.20 16 31 H 0.07 2.85 7.62 -2.38 -0.02 2.83 16 32 H 0.01 0.75 8.11 -2.38 -0.02 0.73 16 33 H 0.03 1.39 5.69 -2.39 -0.01 1.37 16 34 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 2.63 6.08 -2.39 -0.01 2.61 16 37 H 0.08 2.40 6.42 -2.39 -0.02 2.39 16 38 H 0.06 2.04 7.79 -2.39 -0.02 2.02 16 39 H 0.09 2.85 7.94 -2.39 -0.02 2.83 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -62.95 362.62 7.02 -55.93 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.99 Total: 24.92 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 5.06 Total: -13.11 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.75 Total: -79.12 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.75 Total: -4.85 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.95 7.02 -55.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.628 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds