Wall clock time and date at job start Tue Mar 31 2020 09:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.00244 * 2 1 4 4 C 1.54327 * 109.88317 * 121.10168 * 2 1 3 5 5 C 1.55156 * 102.94352 * 97.22274 * 4 2 1 6 6 H 1.09004 * 111.00391 * 277.39103 * 5 4 2 7 7 C 1.50696 * 111.00218 * 153.57673 * 5 4 2 8 8 C 1.38242 * 119.97876 * 299.72606 * 7 5 4 9 9 C 1.38193 * 120.03078 * 179.72848 * 8 7 5 10 10 C 1.38464 * 119.97394 * 0.52239 * 9 8 7 11 11 F 1.35096 * 120.03057 * 179.73115 * 10 9 8 12 12 C 1.38466 * 119.94399 * 359.74764 * 10 9 8 13 13 C 1.38197 * 119.97669 * 0.02562 * 12 10 9 14 14 C 1.54909 * 101.58170 * 35.50355 * 5 4 2 15 15 N 1.47031 * 109.88127 * 238.90681 * 2 1 3 16 16 C 1.34774 * 125.64582 * 59.50523 * 15 2 1 17 17 O 1.21283 * 120.00354 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99780 * 180.02562 * 16 15 2 19 19 C 1.52995 * 109.47323 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47319 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99872 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00154 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47007 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46968 * 120.00282 * 24 22 20 27 27 H 1.48505 * 109.46902 * 240.00278 * 24 22 20 28 28 H 1.09000 * 109.46935 * 298.90477 * 1 2 3 29 29 H 1.09003 * 109.46781 * 58.90386 * 1 2 3 30 30 H 1.08995 * 109.47287 * 178.90065 * 1 2 3 31 31 H 1.09004 * 110.71640 * 215.58833 * 4 2 1 32 32 H 1.09000 * 110.71586 * 338.85494 * 4 2 1 33 33 H 1.08006 * 119.98525 * 359.97438 * 8 7 5 34 34 H 1.08003 * 120.01796 * 180.29426 * 9 8 7 35 35 H 1.08003 * 120.01094 * 180.02562 * 12 10 9 36 36 H 1.07994 * 119.98938 * 180.02562 * 13 12 10 37 37 H 1.09000 * 110.36621 * 81.82836 * 14 5 4 38 38 H 1.09003 * 110.36411 * 204.04512 * 14 5 4 39 39 H 1.09003 * 109.47078 * 299.99736 * 18 16 15 40 40 H 1.09004 * 109.47501 * 59.99154 * 18 16 15 41 41 H 1.08999 * 109.46994 * 299.99422 * 19 18 16 42 42 H 1.08996 * 109.47173 * 59.99714 * 19 18 16 43 43 H 0.96996 * 119.99793 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 6 2.3519 -2.1696 0.6922 6 1 1.4453 -2.7739 0.6608 7 6 3.4235 -2.8503 1.5040 8 6 4.6828 -2.2874 1.5960 9 6 5.6647 -2.9078 2.3447 10 6 5.3901 -4.0994 2.9942 11 9 6.3508 -4.7097 3.7221 12 6 4.1301 -4.6652 2.8969 13 6 3.1484 -4.0405 2.1514 14 6 2.8568 -1.8498 -0.7369 15 7 2.0300 -0.7141 -1.1840 16 6 1.7745 -0.3850 -2.4657 17 8 1.0768 0.5744 -2.7180 18 6 2.3548 -1.2099 -3.5855 19 6 1.9142 -0.6269 -4.9297 20 6 2.4950 -1.4514 -6.0495 21 1 3.1166 -2.3055 -5.8248 22 6 2.2328 -1.1153 -7.3607 23 7 1.4763 -0.0750 -7.6342 24 14 2.9522 -2.1378 -8.7487 25 1 3.7610 -3.2456 -8.1796 26 1 1.8512 -2.7010 -9.5706 27 1 3.8159 -1.2799 -9.5992 28 1 -0.3633 0.4967 0.8997 29 1 -0.3633 0.5308 -0.8800 30 1 -0.3633 -1.0274 -0.0197 31 1 2.9657 -0.2833 1.6182 32 1 1.2918 -0.7891 2.0200 33 1 4.8982 -1.3602 1.0856 34 1 6.6471 -2.4654 2.4203 35 1 3.9146 -5.5945 3.4034 36 1 2.1655 -4.4814 2.0756 37 1 3.9092 -1.5667 -0.7129 38 1 2.7105 -2.7087 -1.3920 39 1 3.4429 -1.1948 -3.5217 40 1 2.0002 -2.2372 -3.5016 41 1 0.8262 -0.6424 -4.9933 42 1 2.2685 0.4004 -5.0138 43 1 1.2922 0.1616 -8.5567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360250191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:50 Heat of formation + Delta-G solvation = -71.582989 kcal Electronic energy + Delta-G solvation = -24298.039824 eV Core-core repulsion = 20642.781868 eV Total energy + Delta-G solvation = -3655.257956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.18513 -40.48679 -39.13205 -37.18790 -33.50869 -32.82968 -32.02716 -31.51076 -30.51609 -28.87213 -25.97366 -25.74251 -23.96020 -23.27748 -22.34520 -20.96065 -20.12483 -18.60385 -18.02340 -17.04144 -16.85983 -16.20734 -15.88084 -15.70561 -15.29051 -15.03392 -14.49575 -14.41615 -14.10983 -13.89698 -13.73488 -13.30433 -13.22540 -13.09575 -12.88212 -12.52149 -12.24195 -12.13358 -11.91659 -11.76486 -11.42437 -11.38913 -11.09816 -10.94702 -10.90383 -10.70421 -10.57410 -9.95453 -9.64564 -9.46286 -9.15353 -9.00032 -8.82998 -8.42292 -8.31355 -5.96106 -4.00368 0.76549 0.87828 3.17199 3.22751 3.24555 3.32576 3.39873 3.43228 3.93254 4.22156 4.29467 4.47408 4.48837 4.54625 4.55451 4.85430 4.89945 4.94722 5.12484 5.20131 5.32388 5.38987 5.48210 5.50197 5.56438 5.60479 5.64565 5.71013 5.74472 5.77182 5.85545 5.91005 6.08504 6.19681 6.21892 6.24413 6.36647 6.53316 6.64251 6.90573 7.74919 7.85717 7.86394 8.07282 8.38764 8.75724 9.08329 9.63227 11.14915 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003013 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.645369 B = 9289.450316 C =10713.736359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 H 0.072 0.928 4 C -0.118 4.118 5 C -0.063 4.063 6 H 0.096 0.904 7 C -0.078 4.078 8 C -0.084 4.084 9 C -0.150 4.150 10 C 0.092 3.908 11 F -0.142 7.142 12 C -0.152 4.152 13 C -0.084 4.084 14 C 0.110 3.890 15 N -0.627 5.627 16 C 0.527 3.473 17 O -0.529 6.529 18 C -0.125 4.125 19 C 0.037 3.963 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -7.077 25.059 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.090 0.910 4 C -0.156 4.156 5 C -0.082 4.082 6 H 0.114 0.886 7 C -0.079 4.079 8 C -0.102 4.102 9 C -0.169 4.169 10 C 0.073 3.927 11 F -0.121 7.121 12 C -0.171 4.171 13 C -0.102 4.102 14 C -0.013 4.013 15 N -0.364 5.364 16 C 0.318 3.682 17 O -0.404 6.404 18 C -0.165 4.165 19 C -0.001 4.001 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.248 -6.433 24.678 25.854 hybrid contribution 0.640 -0.735 -0.603 1.147 sum 4.888 -7.168 24.075 25.591 Atomic orbital electron populations 1.22145 0.94877 1.02208 1.02853 1.21473 0.94774 0.96319 0.84523 0.90964 1.22840 1.01988 0.93831 0.96970 1.21332 0.96877 0.96276 0.93705 0.88587 1.19697 0.94610 0.95230 0.98318 1.20939 0.91982 0.99965 0.97358 1.21157 1.01177 0.95123 0.99402 1.17761 0.86420 0.93319 0.95227 1.91499 1.62643 1.82605 1.75341 1.21142 0.92123 1.01667 1.02132 1.20942 0.99195 0.94341 0.95715 1.22337 0.95054 0.90055 0.93895 1.48816 1.51988 1.30383 1.05263 1.21296 0.79919 0.85215 0.81729 1.90661 1.37982 1.28909 1.82848 1.21864 1.00733 0.98962 0.94940 1.18907 0.97370 0.96397 0.87379 1.21252 1.31165 1.12958 0.91039 0.92576 1.25026 0.95243 0.95213 0.98912 1.70006 1.37448 1.26325 1.19057 0.86543 0.78915 0.80251 0.82307 1.19733 1.21019 1.21009 0.92241 0.90741 0.92686 0.90414 0.89804 0.84705 0.84680 0.84754 0.84850 0.91234 0.89970 0.90392 0.90383 0.95831 0.95837 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.05 37.16 0.34 -1.66 16 2 C 0.13 1.59 3.50 -66.94 -0.23 1.36 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -0.97 5.91 -24.90 -0.15 -1.12 16 5 C -0.06 -0.52 3.26 -89.63 -0.29 -0.81 16 6 H 0.10 0.75 7.96 -51.93 -0.41 0.33 16 7 C -0.08 -0.60 5.00 -104.62 -0.52 -1.12 16 8 C -0.08 -0.64 8.31 -39.60 -0.33 -0.97 16 9 C -0.15 -1.19 10.03 -39.51 -0.40 -1.58 16 10 C 0.09 0.81 7.30 -39.41 -0.29 0.52 16 11 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 12 C -0.15 -1.15 10.03 -39.51 -0.40 -1.55 16 13 C -0.08 -0.60 9.68 -39.59 -0.38 -0.98 16 14 C 0.11 1.18 6.09 -2.53 -0.02 1.17 16 15 N -0.63 -9.03 3.08 -163.01 -0.50 -9.54 16 16 C 0.53 10.28 7.63 -10.99 -0.08 10.19 16 17 O -0.53 -12.44 14.89 5.56 0.08 -12.36 16 18 C -0.13 -2.57 4.65 -27.89 -0.13 -2.70 16 19 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 20 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 24 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.18 6.76 -51.93 -0.35 0.83 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.58 7.22 -51.93 -0.37 0.20 16 32 H 0.08 0.58 7.83 -51.93 -0.41 0.18 16 33 H 0.14 0.91 7.00 -52.48 -0.37 0.54 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 36 H 0.13 0.71 7.99 -52.49 -0.42 0.29 16 37 H 0.07 0.69 6.62 -51.93 -0.34 0.35 16 38 H 0.08 0.89 7.48 -51.93 -0.39 0.50 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.47 7.85 -51.93 -0.41 1.07 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -33.93 356.28 -9.10 -43.03 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.39 Total: -3.00 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -3.41 Total: -12.05 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.23 Total: -36.29 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.93 -9.10 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360250191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.554 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds