Wall clock time and date at job start Tue Mar 31 2020 09:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.00244 * 2 1 4 4 C 1.54327 * 109.88317 * 121.10168 * 2 1 3 5 5 C 1.55156 * 102.94352 * 97.22274 * 4 2 1 6 6 H 1.09004 * 111.00391 * 277.39103 * 5 4 2 7 7 C 1.50696 * 111.00218 * 153.57673 * 5 4 2 8 8 C 1.38242 * 119.97876 * 299.72606 * 7 5 4 9 9 C 1.38193 * 120.03078 * 179.72848 * 8 7 5 10 10 C 1.38464 * 119.97394 * 0.52239 * 9 8 7 11 11 F 1.35096 * 120.03057 * 179.73115 * 10 9 8 12 12 C 1.38466 * 119.94399 * 359.74764 * 10 9 8 13 13 C 1.38197 * 119.97669 * 0.02562 * 12 10 9 14 14 C 1.54909 * 101.58170 * 35.50355 * 5 4 2 15 15 N 1.47031 * 109.88127 * 238.90681 * 2 1 3 16 16 C 1.34774 * 125.64582 * 59.50523 * 15 2 1 17 17 O 1.21283 * 120.00354 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99780 * 180.02562 * 16 15 2 19 19 C 1.52995 * 109.47323 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47319 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99872 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00154 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47007 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46968 * 120.00282 * 24 22 20 27 27 H 1.48505 * 109.46902 * 240.00278 * 24 22 20 28 28 H 1.09000 * 109.46935 * 298.90477 * 1 2 3 29 29 H 1.09003 * 109.46781 * 58.90386 * 1 2 3 30 30 H 1.08995 * 109.47287 * 178.90065 * 1 2 3 31 31 H 1.09004 * 110.71640 * 215.58833 * 4 2 1 32 32 H 1.09000 * 110.71586 * 338.85494 * 4 2 1 33 33 H 1.08006 * 119.98525 * 359.97438 * 8 7 5 34 34 H 1.08003 * 120.01796 * 180.29426 * 9 8 7 35 35 H 1.08003 * 120.01094 * 180.02562 * 12 10 9 36 36 H 1.07994 * 119.98938 * 180.02562 * 13 12 10 37 37 H 1.09000 * 110.36621 * 81.82836 * 14 5 4 38 38 H 1.09003 * 110.36411 * 204.04512 * 14 5 4 39 39 H 1.09003 * 109.47078 * 299.99736 * 18 16 15 40 40 H 1.09004 * 109.47501 * 59.99154 * 18 16 15 41 41 H 1.08999 * 109.46994 * 299.99422 * 19 18 16 42 42 H 1.08996 * 109.47173 * 59.99714 * 19 18 16 43 43 H 0.96996 * 119.99793 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7497 1.2427 5 6 2.3519 -2.1696 0.6922 6 1 1.4453 -2.7739 0.6608 7 6 3.4235 -2.8503 1.5040 8 6 4.6828 -2.2874 1.5960 9 6 5.6647 -2.9078 2.3447 10 6 5.3901 -4.0994 2.9942 11 9 6.3508 -4.7097 3.7221 12 6 4.1301 -4.6652 2.8969 13 6 3.1484 -4.0405 2.1514 14 6 2.8568 -1.8498 -0.7369 15 7 2.0300 -0.7141 -1.1840 16 6 1.7745 -0.3850 -2.4657 17 8 1.0768 0.5744 -2.7180 18 6 2.3548 -1.2099 -3.5855 19 6 1.9142 -0.6269 -4.9297 20 6 2.4950 -1.4514 -6.0495 21 1 3.1166 -2.3055 -5.8248 22 6 2.2328 -1.1153 -7.3607 23 7 1.4763 -0.0750 -7.6342 24 14 2.9522 -2.1378 -8.7487 25 1 3.7610 -3.2456 -8.1796 26 1 1.8512 -2.7010 -9.5706 27 1 3.8159 -1.2799 -9.5992 28 1 -0.3633 0.4967 0.8997 29 1 -0.3633 0.5308 -0.8800 30 1 -0.3633 -1.0274 -0.0197 31 1 2.9657 -0.2833 1.6182 32 1 1.2918 -0.7891 2.0200 33 1 4.8982 -1.3602 1.0856 34 1 6.6471 -2.4654 2.4203 35 1 3.9146 -5.5945 3.4034 36 1 2.1655 -4.4814 2.0756 37 1 3.9092 -1.5667 -0.7129 38 1 2.7105 -2.7087 -1.3920 39 1 3.4429 -1.1948 -3.5217 40 1 2.0002 -2.2372 -3.5016 41 1 0.8262 -0.6424 -4.9933 42 1 2.2685 0.4004 -5.0138 43 1 1.2922 0.1616 -8.5567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360250191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:49 Heat of formation + Delta-G solvation = -90.767940 kcal Electronic energy + Delta-G solvation = -24298.871746 eV Core-core repulsion = 20642.781868 eV Total energy + Delta-G solvation = -3656.089878 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.84990 -41.47038 -40.08322 -38.35183 -35.59287 -33.74360 -33.44087 -32.19455 -32.04521 -29.62277 -27.75037 -26.81224 -24.89512 -24.10592 -23.60404 -22.15691 -21.04993 -19.90019 -18.84311 -18.59633 -17.68934 -17.55620 -16.90219 -16.54344 -16.50207 -16.29204 -16.21419 -15.52941 -14.86263 -14.72392 -14.52979 -14.39107 -14.32739 -14.12935 -14.00560 -13.84755 -13.47902 -13.23044 -13.15012 -13.00347 -12.84059 -12.62986 -12.44256 -12.12680 -12.00421 -11.93468 -11.72811 -11.61043 -11.46069 -11.28086 -10.64313 -10.58251 -10.00412 -9.63969 -9.44650 -8.18550 -6.32675 0.17106 0.34277 1.41985 1.43445 1.56790 1.70844 2.02626 2.42978 2.61410 3.14516 3.34015 3.43924 3.67819 3.73482 3.91013 4.01337 4.03509 4.11760 4.25110 4.33882 4.39632 4.44396 4.46762 4.50022 4.57113 4.68499 4.76706 4.87017 4.95329 5.03120 5.05604 5.09618 5.13096 5.19156 5.24224 5.33301 5.34447 5.48072 5.59232 5.61835 5.64444 5.84469 5.97713 6.16971 6.53005 6.86118 7.28586 7.37833 8.94438 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003013 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.645369 B = 9289.450316 C =10713.736359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.060 0.940 4 C -0.105 4.105 5 C -0.049 4.049 6 H 0.107 0.893 7 C -0.079 4.079 8 C -0.088 4.088 9 C -0.156 4.156 10 C 0.072 3.928 11 F -0.153 7.153 12 C -0.155 4.155 13 C -0.081 4.081 14 C 0.098 3.902 15 N -0.617 5.617 16 C 0.524 3.476 17 O -0.584 6.584 18 C -0.113 4.113 19 C 0.044 3.956 20 C -0.541 4.541 21 H 0.075 0.925 22 C -0.007 4.007 23 N -0.938 5.938 24 Si 0.974 3.026 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.100 0.900 41 H -0.018 1.018 42 H -0.019 1.019 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -9.456 26.697 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 H 0.079 0.921 4 C -0.142 4.142 5 C -0.068 4.068 6 H 0.125 0.875 7 C -0.079 4.079 8 C -0.105 4.105 9 C -0.175 4.175 10 C 0.053 3.947 11 F -0.132 7.132 12 C -0.174 4.174 13 C -0.099 4.099 14 C -0.024 4.024 15 N -0.352 5.352 16 C 0.315 3.685 17 O -0.464 6.464 18 C -0.153 4.153 19 C 0.007 3.993 20 C -0.579 4.579 21 H 0.093 0.907 22 C -0.204 4.204 23 N -0.578 5.578 24 Si 0.798 3.202 25 H -0.176 1.176 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.000 1.000 42 H -0.001 1.001 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.417 -8.854 26.385 28.353 hybrid contribution 0.283 0.026 -1.032 1.071 sum 5.701 -8.828 25.352 27.444 Atomic orbital electron populations 1.22099 0.95087 1.02310 1.02148 1.21730 0.94727 0.96319 0.85099 0.92149 1.22814 1.03106 0.93070 0.95224 1.21228 0.97383 0.96427 0.91746 0.87453 1.19640 0.94309 0.95504 0.98464 1.21068 0.91959 1.00272 0.97244 1.21310 1.01838 0.95005 0.99336 1.18061 0.86850 0.93963 0.95860 1.91470 1.63161 1.82859 1.75722 1.21359 0.91705 1.02202 1.02102 1.21176 0.99962 0.93890 0.94861 1.22685 0.95259 0.88722 0.95691 1.48679 1.51111 1.31121 1.04261 1.20984 0.79627 0.84494 0.83397 1.90643 1.40557 1.31163 1.84061 1.21598 1.01893 0.99618 0.92149 1.18674 0.94603 0.94627 0.91443 1.21726 1.31150 1.13419 0.91634 0.90660 1.26143 0.95503 0.96453 1.02350 1.70184 1.39179 1.28551 1.19888 0.85270 0.78159 0.78673 0.78125 1.17564 1.20583 1.20608 0.89372 0.95155 0.91960 0.89102 0.87503 0.83850 0.83840 0.83389 0.82734 0.89892 0.89611 0.88345 0.88213 0.99986 1.00055 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 9.05 71.98 0.65 -3.12 16 2 C 0.12 2.81 3.50 45.34 0.16 2.97 16 3 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.10 -1.35 5.91 31.78 0.19 -1.16 16 5 C -0.05 -0.62 3.26 -10.15 -0.03 -0.66 16 6 H 0.11 1.20 7.96 -2.39 -0.02 1.18 16 7 C -0.08 -0.92 5.00 -19.86 -0.10 -1.02 16 8 C -0.09 -1.08 8.31 22.26 0.18 -0.89 16 9 C -0.16 -2.15 10.03 22.31 0.22 -1.92 16 10 C 0.07 1.12 7.30 22.38 0.16 1.29 16 11 F -0.15 -2.83 17.27 44.97 0.78 -2.06 16 12 C -0.16 -1.93 10.03 22.31 0.22 -1.71 16 13 C -0.08 -0.86 9.68 22.26 0.22 -0.64 16 14 C 0.10 1.85 6.09 86.86 0.53 2.38 16 15 N -0.62 -17.20 3.08 -788.03 -2.43 -19.63 16 16 C 0.52 20.94 7.63 87.66 0.67 21.61 16 17 O -0.58 -29.27 14.89 -3.04 -0.05 -29.32 16 18 C -0.11 -4.67 4.65 29.85 0.14 -4.53 16 19 C 0.04 2.50 4.26 29.85 0.13 2.63 16 20 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 21 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 22 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 23 N -0.94 -59.97 13.29 21.45 0.28 -59.68 16 24 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 25 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 0.99 6.76 -2.39 -0.02 0.97 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.00 7.22 -2.39 -0.02 0.98 16 32 H 0.11 0.99 7.83 -2.39 -0.02 0.97 16 33 H 0.14 1.48 7.00 -2.91 -0.02 1.46 16 34 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.16 0.96 7.99 -2.91 -0.02 0.93 16 37 H 0.08 1.39 6.62 -2.39 -0.02 1.37 16 38 H 0.09 1.60 7.48 -2.39 -0.02 1.58 16 39 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.10 3.65 7.85 -2.38 -0.02 3.64 16 41 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 42 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 43 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -78.59 356.28 5.65 -72.94 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.00 Total: 6.83 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.04 Total: -15.59 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.14 Total: -79.31 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -78.59 5.65 -72.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360250191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.829 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds