Wall clock time and date at job start Tue Mar 31 2020 09:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 6 6 H 1.08998 * 110.88682 * 277.25916 * 5 4 2 7 7 C 1.50695 * 111.03707 * 153.47289 * 5 4 2 8 8 C 1.38257 * 119.97362 * 305.94897 * 7 5 4 9 9 C 1.38197 * 120.02283 * 179.77067 * 8 7 5 10 10 C 1.38456 * 119.97578 * 0.50613 * 9 8 7 11 11 F 1.35104 * 120.02472 * 179.77159 * 10 9 8 12 12 C 1.38457 * 119.95287 * 359.74698 * 10 9 8 13 13 C 1.38206 * 119.97188 * 359.97438 * 12 10 9 14 14 C 1.54903 * 101.66790 * 35.33394 * 5 4 2 15 15 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 16 16 C 1.34778 * 125.64817 * 298.32564 * 15 2 1 17 17 O 1.21283 * 119.99580 * 359.97438 * 16 15 2 18 18 C 1.50693 * 120.00059 * 179.97438 * 16 15 2 19 19 C 1.53001 * 109.47102 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47432 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99473 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00234 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99634 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99905 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47125 * 89.99350 * 24 22 20 26 26 H 1.48497 * 109.46753 * 209.99538 * 24 22 20 27 27 H 1.48495 * 109.46878 * 329.99251 * 24 22 20 28 28 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 29 29 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 30 30 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 31 31 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 32 32 H 1.08995 * 110.72020 * 100.02165 * 4 2 1 33 33 H 1.08000 * 119.98075 * 0.02562 * 8 7 5 34 34 H 1.08004 * 120.00975 * 180.25022 * 9 8 7 35 35 H 1.07988 * 120.01678 * 180.02562 * 12 10 9 36 36 H 1.07995 * 119.98840 * 180.02562 * 13 12 10 37 37 H 1.09002 * 110.36788 * 204.23581 * 14 5 4 38 38 H 1.08998 * 110.36812 * 81.91638 * 14 5 4 39 39 H 1.09001 * 109.47183 * 299.99774 * 18 16 15 40 40 H 1.09001 * 109.47488 * 60.00331 * 18 16 15 41 41 H 1.09001 * 109.47046 * 300.00016 * 19 18 16 42 42 H 1.09005 * 109.47030 * 59.99853 * 19 18 16 43 43 H 0.97004 * 119.99459 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2876 -1.5152 -0.6903 6 1 4.1654 -0.8697 -0.6593 7 6 3.5608 -2.7561 -1.5005 8 6 2.5570 -3.6856 -1.7000 9 6 2.8051 -4.8217 -2.4468 10 6 4.0624 -5.0339 -2.9865 11 9 4.3073 -6.1464 -3.7129 12 6 5.0684 -4.1049 -2.7817 13 6 4.8164 -2.9667 -2.0394 14 6 2.8146 -1.8784 0.7393 15 7 2.0301 -0.7124 1.1849 16 6 1.8086 -0.3579 2.4662 17 8 1.1459 0.6263 2.7171 18 6 2.3844 -1.1845 3.5869 19 6 1.9879 -0.5689 4.9304 20 6 2.5631 -1.3958 6.0512 21 1 3.1530 -2.2724 5.8277 22 6 2.3373 -1.0325 7.3620 23 7 2.8390 -1.7545 8.3401 24 14 1.3177 0.4842 7.7485 25 1 -0.1123 0.1020 7.8683 26 1 1.7802 1.0785 9.0284 27 1 1.4748 1.4777 6.6561 28 1 -0.3633 0.5246 0.8837 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5029 -0.8962 31 1 1.3051 -1.4437 -1.6203 32 1 2.3529 -0.0431 -2.0201 33 1 1.5776 -3.5218 -1.2755 34 1 2.0196 -5.5457 -2.6059 35 1 6.0492 -4.2691 -3.2025 36 1 5.6008 -2.2417 -1.8798 37 1 3.6717 -2.0319 1.3950 38 1 2.1887 -2.7705 0.7166 39 1 1.9971 -2.2014 3.5244 40 1 3.4710 -1.2036 3.5032 41 1 2.3754 0.4480 4.9926 42 1 0.9012 -0.5493 5.0144 43 1 2.6798 -1.4992 9.2623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360250196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:52 Heat of formation + Delta-G solvation = -69.249509 kcal Electronic energy + Delta-G solvation = -24348.710681 eV Core-core repulsion = 20693.553912 eV Total energy + Delta-G solvation = -3655.156769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.19005 -40.52334 -39.19733 -37.26981 -33.54990 -32.92420 -32.09343 -31.52144 -30.86086 -29.00421 -26.22374 -25.89815 -23.89226 -23.33283 -22.17191 -20.74425 -20.28050 -18.58573 -18.05467 -17.25258 -17.02347 -16.25936 -16.18132 -15.88750 -15.39743 -14.90829 -14.56144 -14.22884 -14.01966 -13.99294 -13.84272 -13.43434 -13.20992 -12.99701 -12.93596 -12.72975 -12.48947 -12.40799 -12.01938 -11.68156 -11.51977 -11.46884 -11.31994 -11.02510 -10.91032 -10.82616 -10.14772 -10.03844 -9.77980 -9.47375 -9.22642 -9.16017 -8.85923 -8.52885 -8.48523 -6.02940 -4.01632 0.75076 0.86687 3.08626 3.13105 3.18635 3.37922 3.44491 3.55461 3.92197 4.17494 4.27079 4.43313 4.51018 4.52411 4.53420 4.80705 4.88159 4.93620 5.04445 5.16544 5.23011 5.32564 5.38529 5.43361 5.52688 5.56590 5.61099 5.64873 5.67877 5.75774 5.80946 5.89092 5.99609 6.06212 6.10945 6.20467 6.25043 6.50922 6.53542 6.70237 7.36212 7.43430 7.71807 7.81061 8.49339 8.62695 9.00056 9.60153 11.09899 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002979 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.277596 B = 9397.491639 C =10445.849517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.064 4.064 6 H 0.096 0.904 7 C -0.079 4.079 8 C -0.084 4.084 9 C -0.150 4.150 10 C 0.093 3.907 11 F -0.142 7.142 12 C -0.152 4.152 13 C -0.083 4.083 14 C 0.110 3.890 15 N -0.625 5.625 16 C 0.528 3.472 17 O -0.536 6.536 18 C -0.118 4.118 19 C 0.002 3.998 20 C -0.524 4.524 21 H 0.072 0.928 22 C 0.069 3.931 23 N -0.904 5.904 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.261 1.261 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -3.290 -27.034 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.083 4.083 6 H 0.115 0.885 7 C -0.079 4.079 8 C -0.102 4.102 9 C -0.169 4.169 10 C 0.074 3.926 11 F -0.121 7.121 12 C -0.170 4.170 13 C -0.101 4.101 14 C -0.013 4.013 15 N -0.362 5.362 16 C 0.319 3.681 17 O -0.411 6.411 18 C -0.157 4.157 19 C -0.036 4.036 20 C -0.562 4.562 21 H 0.090 0.910 22 C -0.132 4.132 23 N -0.542 5.542 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.185 1.185 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.415 -2.771 -26.610 26.791 hybrid contribution -0.393 0.353 0.130 0.544 sum 1.022 -2.419 -26.480 26.610 Atomic orbital electron populations 1.22134 0.94884 1.02185 1.02834 1.21491 0.94679 0.96453 0.84513 0.90880 1.22913 0.96619 0.99338 0.96809 1.21375 0.99313 0.93899 0.93677 0.88538 1.19673 0.93707 0.95951 0.98615 1.20923 0.99620 0.92651 0.96984 1.21153 0.95941 0.99629 1.00171 1.17761 0.94828 0.84552 0.95486 1.91504 1.94936 1.50341 1.75278 1.21146 0.99270 0.94756 1.01870 1.20952 0.96513 0.96646 0.96011 1.22346 0.95867 0.89162 0.93961 1.48769 1.53683 1.28530 1.05234 1.21259 0.79558 0.85397 0.81911 1.90646 1.39681 1.27773 1.83042 1.21665 1.01210 0.99213 0.93654 1.19375 0.97003 0.96697 0.90528 1.21105 1.33396 1.12076 0.89645 0.90957 1.24970 0.95369 0.96612 0.96278 1.69916 1.45610 1.39308 0.99416 0.86797 0.80747 0.84180 0.77850 1.20244 1.21449 1.18524 0.90944 0.92646 0.92117 0.90127 0.89910 0.84784 0.84680 0.84713 0.84802 0.89770 0.91148 0.89759 0.89725 0.95839 0.96298 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.10 37.16 0.34 -1.53 16 2 C 0.13 1.49 3.45 -66.95 -0.23 1.26 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.12 -0.92 5.90 -24.76 -0.15 -1.06 16 5 C -0.06 -0.50 3.26 -89.49 -0.29 -0.79 16 6 H 0.10 0.70 7.96 -51.93 -0.41 0.29 16 7 C -0.08 -0.59 5.00 -104.61 -0.52 -1.11 16 8 C -0.08 -0.62 8.28 -39.59 -0.33 -0.95 16 9 C -0.15 -1.17 10.03 -39.52 -0.40 -1.57 16 10 C 0.09 0.81 7.30 -39.42 -0.29 0.52 16 11 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 12 C -0.15 -1.14 10.03 -39.51 -0.40 -1.54 16 13 C -0.08 -0.58 9.68 -39.59 -0.38 -0.96 16 14 C 0.11 1.13 6.11 -2.53 -0.02 1.12 16 15 N -0.63 -8.55 3.06 -163.02 -0.50 -9.05 16 16 C 0.53 9.72 7.64 -10.99 -0.08 9.63 16 17 O -0.54 -11.82 15.03 5.56 0.08 -11.74 16 18 C -0.12 -2.31 4.65 -27.89 -0.13 -2.44 16 19 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 20 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 21 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 24 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 28 H 0.07 1.07 6.89 -51.93 -0.36 0.71 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.56 6.50 -51.93 -0.34 0.22 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.13 0.86 7.02 -52.49 -0.37 0.49 16 34 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.69 7.98 -52.49 -0.42 0.27 16 37 H 0.08 0.87 7.48 -51.93 -0.39 0.49 16 38 H 0.07 0.68 7.04 -51.93 -0.37 0.32 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 1.54 7.85 -51.93 -0.41 1.13 16 41 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 42 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -33.98 352.97 -8.72 -42.69 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.37 Total: -3.72 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.40 Total: -12.86 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.27 Total: -36.33 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.98 -8.72 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360250196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.557 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds