Wall clock time and date at job start Tue Mar 31 2020 09:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 6 6 H 1.08998 * 110.88682 * 277.25916 * 5 4 2 7 7 C 1.50695 * 111.03707 * 153.47289 * 5 4 2 8 8 C 1.38257 * 119.97362 * 305.94897 * 7 5 4 9 9 C 1.38197 * 120.02283 * 179.77067 * 8 7 5 10 10 C 1.38456 * 119.97578 * 0.50613 * 9 8 7 11 11 F 1.35104 * 120.02472 * 179.77159 * 10 9 8 12 12 C 1.38457 * 119.95287 * 359.74698 * 10 9 8 13 13 C 1.38206 * 119.97188 * 359.97438 * 12 10 9 14 14 C 1.54903 * 101.66790 * 35.33394 * 5 4 2 15 15 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 16 16 C 1.34778 * 125.64817 * 298.32564 * 15 2 1 17 17 O 1.21283 * 119.99580 * 359.97438 * 16 15 2 18 18 C 1.50693 * 120.00059 * 179.97438 * 16 15 2 19 19 C 1.53001 * 109.47102 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47432 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99473 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00234 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99634 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99905 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47125 * 89.99350 * 24 22 20 26 26 H 1.48497 * 109.46753 * 209.99538 * 24 22 20 27 27 H 1.48495 * 109.46878 * 329.99251 * 24 22 20 28 28 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 29 29 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 30 30 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 31 31 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 32 32 H 1.08995 * 110.72020 * 100.02165 * 4 2 1 33 33 H 1.08000 * 119.98075 * 0.02562 * 8 7 5 34 34 H 1.08004 * 120.00975 * 180.25022 * 9 8 7 35 35 H 1.07988 * 120.01678 * 180.02562 * 12 10 9 36 36 H 1.07995 * 119.98840 * 180.02562 * 13 12 10 37 37 H 1.09002 * 110.36788 * 204.23581 * 14 5 4 38 38 H 1.08998 * 110.36812 * 81.91638 * 14 5 4 39 39 H 1.09001 * 109.47183 * 299.99774 * 18 16 15 40 40 H 1.09001 * 109.47488 * 60.00331 * 18 16 15 41 41 H 1.09001 * 109.47046 * 300.00016 * 19 18 16 42 42 H 1.09005 * 109.47030 * 59.99853 * 19 18 16 43 43 H 0.97004 * 119.99459 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2876 -1.5152 -0.6903 6 1 4.1654 -0.8697 -0.6593 7 6 3.5608 -2.7561 -1.5005 8 6 2.5570 -3.6856 -1.7000 9 6 2.8051 -4.8217 -2.4468 10 6 4.0624 -5.0339 -2.9865 11 9 4.3073 -6.1464 -3.7129 12 6 5.0684 -4.1049 -2.7817 13 6 4.8164 -2.9667 -2.0394 14 6 2.8146 -1.8784 0.7393 15 7 2.0301 -0.7124 1.1849 16 6 1.8086 -0.3579 2.4662 17 8 1.1459 0.6263 2.7171 18 6 2.3844 -1.1845 3.5869 19 6 1.9879 -0.5689 4.9304 20 6 2.5631 -1.3958 6.0512 21 1 3.1530 -2.2724 5.8277 22 6 2.3373 -1.0325 7.3620 23 7 2.8390 -1.7545 8.3401 24 14 1.3177 0.4842 7.7485 25 1 -0.1123 0.1020 7.8683 26 1 1.7802 1.0785 9.0284 27 1 1.4748 1.4777 6.6561 28 1 -0.3633 0.5246 0.8837 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5029 -0.8962 31 1 1.3051 -1.4437 -1.6203 32 1 2.3529 -0.0431 -2.0201 33 1 1.5776 -3.5218 -1.2755 34 1 2.0196 -5.5457 -2.6059 35 1 6.0492 -4.2691 -3.2025 36 1 5.6008 -2.2417 -1.8798 37 1 3.6717 -2.0319 1.3950 38 1 2.1887 -2.7705 0.7166 39 1 1.9971 -2.2014 3.5244 40 1 3.4710 -1.2036 3.5032 41 1 2.3754 0.4480 4.9926 42 1 0.9012 -0.5493 5.0144 43 1 2.6798 -1.4992 9.2623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360250196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:52 Heat of formation + Delta-G solvation = -88.364875 kcal Electronic energy + Delta-G solvation = -24349.539585 eV Core-core repulsion = 20693.553912 eV Total energy + Delta-G solvation = -3655.985673 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.85491 -41.46278 -40.09896 -38.34801 -35.57798 -33.77861 -33.59277 -32.41784 -32.05204 -29.72267 -28.02794 -26.79738 -24.67926 -24.08695 -23.44013 -21.94318 -21.21539 -19.89262 -19.07181 -18.65046 -17.99348 -17.53547 -16.97579 -16.55059 -16.39304 -16.26266 -16.21670 -15.43000 -14.97213 -14.80700 -14.66497 -14.62935 -14.38826 -14.26221 -13.89735 -13.69827 -13.54683 -13.49316 -13.22099 -13.07400 -12.88493 -12.45961 -12.21959 -12.06133 -12.01938 -11.96483 -11.78611 -11.72837 -11.50561 -11.40352 -10.78795 -10.69260 -10.01049 -9.64818 -9.45856 -8.32237 -6.35146 0.16313 0.33610 1.32535 1.34396 1.49638 1.67346 2.00974 2.34370 2.60575 3.03399 3.33114 3.42637 3.68567 3.71056 3.89611 3.98835 4.01915 4.12458 4.24216 4.30281 4.36135 4.39121 4.44276 4.46215 4.54101 4.68782 4.75576 4.84170 4.95647 4.96977 5.04954 5.08676 5.09065 5.21114 5.23592 5.30544 5.32986 5.34949 5.42612 5.55831 5.60068 5.63276 5.97074 6.22785 6.50949 6.71035 7.23855 7.30259 8.83459 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002979 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.277596 B = 9397.491639 C =10445.849517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.064 0.936 4 C -0.106 4.106 5 C -0.051 4.051 6 H 0.107 0.893 7 C -0.079 4.079 8 C -0.086 4.086 9 C -0.157 4.157 10 C 0.072 3.928 11 F -0.153 7.153 12 C -0.156 4.156 13 C -0.082 4.082 14 C 0.099 3.901 15 N -0.617 5.617 16 C 0.528 3.472 17 O -0.582 6.582 18 C -0.111 4.111 19 C 0.007 3.993 20 C -0.528 4.528 21 H 0.050 0.950 22 C 0.014 3.986 23 N -0.943 5.943 24 Si 0.938 3.062 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.262 1.262 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -2.891 -29.210 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.083 0.917 4 C -0.144 4.144 5 C -0.070 4.070 6 H 0.125 0.875 7 C -0.080 4.080 8 C -0.104 4.104 9 C -0.175 4.175 10 C 0.053 3.947 11 F -0.132 7.132 12 C -0.175 4.175 13 C -0.100 4.100 14 C -0.023 4.023 15 N -0.351 5.351 16 C 0.318 3.682 17 O -0.462 6.462 18 C -0.151 4.151 19 C -0.031 4.031 20 C -0.566 4.566 21 H 0.068 0.932 22 C -0.183 4.183 23 N -0.584 5.584 24 Si 0.762 3.238 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.186 1.186 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.478 -2.406 -28.839 28.977 hybrid contribution -0.356 0.141 0.742 0.835 sum 1.122 -2.264 -28.096 28.210 Atomic orbital electron populations 1.22093 0.95012 1.02282 1.02262 1.21743 0.94677 0.96485 0.84893 0.91740 1.22897 0.96625 0.99568 0.95260 1.21277 0.99721 0.94206 0.91748 0.87454 1.19648 0.93977 0.95710 0.98671 1.21072 1.00186 0.92403 0.96738 1.21318 0.95968 1.00112 1.00123 1.18067 0.95739 0.84736 0.96204 1.91472 1.95057 1.51012 1.75685 1.21358 0.99648 0.94642 1.01820 1.21189 0.96859 0.96685 0.95254 1.22647 0.95739 0.88218 0.95675 1.48659 1.52762 1.29224 1.04416 1.20833 0.79363 0.84691 0.83301 1.90627 1.41864 1.29588 1.84074 1.21463 1.02217 0.99589 0.91807 1.19207 0.95838 0.95629 0.92403 1.21408 1.32699 1.11628 0.90908 0.93201 1.25793 0.96642 0.99546 0.96355 1.70024 1.47199 1.41146 0.99984 0.85835 0.79483 0.80598 0.77844 1.19376 1.20263 1.18625 0.94796 0.92087 0.89473 0.88830 0.87660 0.83701 0.83787 0.83471 0.82799 0.89738 0.90084 0.88536 0.88351 0.97220 0.97431 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.10 71.98 0.66 -2.73 16 2 C 0.12 2.55 3.45 45.34 0.16 2.71 16 3 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 4 C -0.11 -1.23 5.90 31.87 0.19 -1.04 16 5 C -0.05 -0.61 3.26 -10.06 -0.03 -0.64 16 6 H 0.11 1.13 7.96 -2.39 -0.02 1.11 16 7 C -0.08 -0.92 5.00 -19.86 -0.10 -1.02 16 8 C -0.09 -1.03 8.28 22.26 0.18 -0.85 16 9 C -0.16 -2.14 10.03 22.31 0.22 -1.92 16 10 C 0.07 1.14 7.30 22.37 0.16 1.30 16 11 F -0.15 -2.88 17.27 44.97 0.78 -2.10 16 12 C -0.16 -2.00 10.03 22.31 0.22 -1.78 16 13 C -0.08 -0.89 9.68 22.26 0.22 -0.67 16 14 C 0.10 1.79 6.11 86.85 0.53 2.32 16 15 N -0.62 -15.85 3.06 -788.07 -2.42 -18.27 16 16 C 0.53 19.21 7.64 87.65 0.67 19.88 16 17 O -0.58 -25.98 15.03 -3.04 -0.05 -26.03 16 18 C -0.11 -4.31 4.65 29.85 0.14 -4.17 16 19 C 0.01 0.36 3.33 29.85 0.10 0.46 16 20 C -0.53 -30.73 9.66 25.60 0.25 -30.48 16 21 H 0.05 3.05 7.99 -2.91 -0.02 3.02 16 22 C 0.01 0.86 5.47 84.65 0.46 1.32 16 23 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 24 Si 0.94 47.07 27.47 68.60 1.88 48.95 16 25 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 27 H -0.26 -13.10 6.54 99.48 0.65 -12.45 16 28 H 0.03 0.99 6.89 -2.39 -0.02 0.98 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.09 0.90 6.50 -2.38 -0.02 0.89 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.15 1.38 7.02 -2.91 -0.02 1.36 16 34 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.15 1.43 8.06 -2.92 -0.02 1.41 16 36 H 0.15 1.01 7.98 -2.91 -0.02 0.99 16 37 H 0.08 1.55 7.48 -2.39 -0.02 1.53 16 38 H 0.08 1.34 7.04 -2.39 -0.02 1.32 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.10 3.50 7.85 -2.39 -0.02 3.48 16 41 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 42 H 0.01 0.38 7.53 -2.38 -0.02 0.37 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -74.88 352.97 5.47 -69.41 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.94 Total: 4.31 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.03 Total: -17.31 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -2.12 Total: -77.22 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.88 Total: 48.95 kcal Total: -74.88 5.47 -69.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360250196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.956 kcal (2) G-P(sol) polarization free energy of solvation -74.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds