Wall clock time and date at job start Tue Mar 31 2020 09:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.99584 * 2 1 4 4 C 1.54309 * 109.98499 * 238.96743 * 2 1 3 5 5 C 1.55157 * 102.86932 * 263.04961 * 4 2 1 6 6 H 1.08992 * 111.00502 * 82.37809 * 5 4 2 7 7 C 1.50693 * 111.04028 * 206.21862 * 5 4 2 8 8 C 1.38250 * 119.97665 * 53.38489 * 7 5 4 9 9 C 1.38203 * 120.02773 * 179.76520 * 8 7 5 10 10 C 1.38465 * 119.97091 * 0.51836 * 9 8 7 11 11 F 1.35095 * 120.02066 * 179.76304 * 10 9 8 12 12 C 1.38458 * 119.94867 * 359.73763 * 10 9 8 13 13 C 1.38195 * 119.97695 * 0.02562 * 12 10 9 14 14 C 1.54910 * 101.57693 * 324.30607 * 5 4 2 15 15 N 1.47025 * 109.88193 * 121.09370 * 2 1 3 16 16 C 1.34770 * 125.65111 * 300.51544 * 15 2 1 17 17 O 1.21283 * 120.00059 * 359.71568 * 16 15 2 18 18 C 1.50697 * 120.00483 * 179.71456 * 16 15 2 19 19 C 1.52996 * 109.47491 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47159 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72211 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 H 1.09003 * 109.46791 * 300.35505 * 1 2 3 29 29 H 1.08993 * 109.47108 * 60.35683 * 1 2 3 30 30 H 1.09003 * 109.47033 * 180.35868 * 1 2 3 31 31 H 1.09008 * 110.92386 * 144.63574 * 4 2 1 32 32 H 1.09004 * 110.59303 * 21.31200 * 4 2 1 33 33 H 1.08003 * 119.98765 * 0.03097 * 8 7 5 34 34 H 1.07997 * 120.01093 * 180.25606 * 9 8 7 35 35 H 1.07998 * 120.01172 * 179.97438 * 12 10 9 36 36 H 1.07998 * 119.99280 * 179.97438 * 13 12 10 37 37 H 1.09009 * 110.36913 * 278.16848 * 14 5 4 38 38 H 1.08999 * 110.45876 * 155.89705 * 14 5 4 39 39 H 1.09004 * 109.46801 * 59.99704 * 18 16 15 40 40 H 1.09000 * 109.47461 * 300.00236 * 18 16 15 41 41 H 1.09004 * 109.47066 * 60.00201 * 19 18 16 42 42 H 1.08994 * 109.47405 * 300.00031 * 19 18 16 43 43 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0574 -0.7476 -1.2426 5 6 2.3475 -2.1694 -0.6932 6 1 1.4382 -2.7695 -0.6628 7 6 3.4168 -2.8549 -1.5041 8 6 4.6325 -2.2305 -1.7126 9 6 5.6156 -2.8603 -2.4520 10 6 5.3788 -4.1127 -2.9931 11 9 6.3374 -4.7272 -3.7201 12 6 4.1589 -4.7347 -2.7881 13 6 3.1791 -4.1051 -2.0443 14 6 2.8522 -1.8531 0.7368 15 7 2.0300 -0.7140 1.1840 16 6 1.7742 -0.3853 2.4657 17 8 1.0808 0.5772 2.7181 18 6 2.3497 -1.2136 3.5854 19 6 1.9108 -0.6294 4.9296 20 6 2.4859 -1.4582 6.0492 21 1 3.1031 -2.3155 5.8246 22 6 2.2292 -1.1182 7.3606 23 7 1.4780 -0.0740 7.6342 24 14 2.9484 -2.1409 8.7485 25 1 3.7515 -3.2527 8.1793 26 1 3.8184 -1.2850 9.5946 27 1 1.8474 -2.6977 9.5750 28 1 -0.3633 0.5194 0.8868 29 1 -0.3633 0.5082 -0.8931 30 1 -0.3633 -1.0277 0.0064 31 1 2.9708 -0.2849 -1.6167 32 1 1.2951 -0.7831 -2.0209 33 1 4.8156 -1.2519 -1.2939 34 1 6.5667 -2.3741 -2.6112 35 1 3.9729 -5.7113 -3.2101 36 1 2.2273 -4.5899 -1.8846 37 1 3.9059 -1.5746 0.7143 38 1 2.7012 -2.7106 1.3925 39 1 3.4379 -1.2029 3.5229 40 1 1.9910 -2.2393 3.5000 41 1 0.8226 -0.6398 4.9923 42 1 2.2699 0.3961 5.0148 43 1 1.2971 0.1650 8.5568 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360250198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:55 Heat of formation + Delta-G solvation = -71.629413 kcal Electronic energy + Delta-G solvation = -24296.409994 eV Core-core repulsion = 20641.150025 eV Total energy + Delta-G solvation = -3655.259969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.18593 -40.48690 -39.13353 -37.18871 -33.50700 -32.83075 -32.02134 -31.51271 -30.51526 -28.87130 -25.98460 -25.74582 -23.92144 -23.30671 -22.34299 -20.96878 -20.11702 -18.59469 -18.03303 -17.04136 -16.86858 -16.19666 -15.88151 -15.69998 -15.28805 -15.03785 -14.51979 -14.42221 -14.07800 -13.87191 -13.74339 -13.34233 -13.23527 -13.09964 -12.85566 -12.53751 -12.23418 -12.12432 -11.91522 -11.75660 -11.45053 -11.37611 -11.09794 -10.94672 -10.90742 -10.69448 -10.57374 -9.95378 -9.64545 -9.46299 -9.15426 -9.00398 -8.82939 -8.42234 -8.31285 -5.96094 -4.00313 0.76446 0.87774 3.16837 3.23284 3.24600 3.32581 3.39897 3.43265 3.93225 4.22185 4.29232 4.47451 4.49196 4.54602 4.55390 4.85444 4.89935 4.93648 5.13514 5.20240 5.32389 5.39001 5.47615 5.50026 5.56722 5.61336 5.63689 5.71125 5.74311 5.77046 5.85387 5.91103 6.08297 6.19724 6.21932 6.24601 6.36600 6.53242 6.64357 6.90645 7.74945 7.85803 7.86440 8.07311 8.38793 8.75788 9.08354 9.63239 11.14920 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003013 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.910181 B = 9289.306106 C =10710.632929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.063 4.063 6 H 0.096 0.904 7 C -0.078 4.078 8 C -0.084 4.084 9 C -0.150 4.150 10 C 0.092 3.908 11 F -0.142 7.142 12 C -0.152 4.152 13 C -0.084 4.084 14 C 0.111 3.889 15 N -0.627 5.627 16 C 0.527 3.473 17 O -0.529 6.529 18 C -0.125 4.125 19 C 0.037 3.963 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -7.097 -25.072 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.082 4.082 6 H 0.114 0.886 7 C -0.079 4.079 8 C -0.102 4.102 9 C -0.169 4.169 10 C 0.073 3.927 11 F -0.121 7.121 12 C -0.171 4.171 13 C -0.102 4.102 14 C -0.012 4.012 15 N -0.365 5.365 16 C 0.318 3.682 17 O -0.404 6.404 18 C -0.165 4.165 19 C -0.001 4.001 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.226 -6.448 -24.691 25.867 hybrid contribution 0.643 -0.734 0.605 1.149 sum 4.870 -7.183 -24.085 25.601 Atomic orbital electron populations 1.22143 0.94873 1.02164 1.02909 1.21462 0.94756 0.96345 0.84528 0.90978 1.22855 1.02011 0.93869 0.96991 1.21331 0.96885 0.96245 0.93729 0.88597 1.19697 0.94982 0.94700 0.98489 1.20934 0.92161 1.00092 0.97031 1.21156 1.01134 0.94348 1.00249 1.17759 0.86816 0.92627 0.95511 1.91499 1.62648 1.82694 1.75246 1.21141 0.92647 1.01384 1.01881 1.20951 0.99038 0.94173 0.96012 1.22322 0.95119 0.89974 0.93828 1.48817 1.52152 1.30222 1.05261 1.21294 0.79839 0.85296 0.81729 1.90661 1.38123 1.28780 1.82848 1.21863 1.00769 0.98927 0.94941 1.18908 0.97390 0.96377 0.87378 1.21254 1.31528 1.12592 0.91037 0.92577 1.25028 0.95262 0.95201 0.98915 1.70011 1.37648 1.26128 1.19048 0.86541 0.78913 0.80247 0.82299 1.19735 1.21017 1.21014 0.90724 0.92234 0.92694 0.90350 0.89809 0.84739 0.84691 0.84743 0.84830 0.91260 0.89988 0.90395 0.90380 0.95837 0.95831 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.07 37.16 0.34 -1.66 16 2 C 0.13 1.59 3.48 -66.96 -0.23 1.36 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.12 -0.98 5.90 -24.90 -0.15 -1.13 16 5 C -0.06 -0.52 3.25 -89.63 -0.29 -0.81 16 6 H 0.10 0.75 7.96 -51.93 -0.41 0.33 16 7 C -0.08 -0.60 5.00 -104.62 -0.52 -1.12 16 8 C -0.08 -0.64 8.29 -39.59 -0.33 -0.97 16 9 C -0.15 -1.18 10.03 -39.51 -0.40 -1.58 16 10 C 0.09 0.81 7.30 -39.42 -0.29 0.52 16 11 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 12 C -0.15 -1.15 10.03 -39.52 -0.40 -1.55 16 13 C -0.08 -0.60 9.68 -39.59 -0.38 -0.98 16 14 C 0.11 1.20 6.11 -2.53 -0.02 1.18 16 15 N -0.63 -9.04 3.08 -163.03 -0.50 -9.55 16 16 C 0.53 10.29 7.63 -10.99 -0.08 10.20 16 17 O -0.53 -12.45 14.88 5.55 0.08 -12.37 16 18 C -0.13 -2.57 4.64 -27.89 -0.13 -2.70 16 19 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 20 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 24 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.07 1.18 6.75 -51.93 -0.35 0.83 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.57 6.75 -51.92 -0.35 0.22 16 32 H 0.08 0.58 7.83 -51.93 -0.41 0.18 16 33 H 0.13 0.89 7.01 -52.48 -0.37 0.52 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.72 7.98 -52.49 -0.42 0.30 16 37 H 0.07 0.70 7.08 -51.92 -0.37 0.33 16 38 H 0.08 0.89 7.47 -51.93 -0.39 0.50 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.47 7.84 -51.93 -0.41 1.07 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -33.95 356.24 -9.09 -43.04 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -6.39 Total: -3.02 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -3.41 Total: -12.04 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.23 Total: -36.30 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.95 -9.09 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360250198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.589 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds