Wall clock time and date at job start Tue Mar 31 2020 09:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50703 * 109.47250 * 239.99948 * 2 1 3 5 5 H 1.08001 * 119.99511 * 275.04349 * 4 2 1 6 6 C 1.37878 * 119.99786 * 95.31274 * 4 2 1 7 7 N 1.31513 * 119.99355 * 184.65529 * 6 4 2 8 8 Si 1.86796 * 120.00128 * 4.65422 * 6 4 2 9 9 H 1.48500 * 109.46849 * 85.01707 * 8 6 4 10 10 H 1.48496 * 109.47106 * 205.01336 * 8 6 4 11 11 H 1.48494 * 109.47410 * 325.01785 * 8 6 4 12 12 N 1.46499 * 109.46799 * 119.99708 * 2 1 3 13 13 C 1.46501 * 120.00078 * 60.00521 * 12 2 1 14 14 C 1.34777 * 120.00106 * 239.99781 * 12 2 1 15 15 O 1.21280 * 119.99542 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 12 2 17 17 C 1.53782 * 113.61463 * 277.50022 * 16 14 12 18 18 C 1.53782 * 87.07866 * 220.01812 * 17 16 14 19 19 C 1.50699 * 113.61072 * 139.98176 * 18 17 16 20 20 C 1.38271 * 119.98758 * 142.50285 * 19 18 17 21 21 C 1.38220 * 120.05326 * 179.97438 * 20 19 18 22 22 C 1.38219 * 120.02698 * 0.02562 * 21 20 19 23 23 C 1.38444 * 119.97151 * 359.97438 * 22 21 20 24 24 F 1.35106 * 120.02254 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98691 * 322.22674 * 19 18 17 26 26 C 1.53776 * 113.61232 * 180.02562 * 16 14 12 27 27 H 1.09002 * 109.47072 * 53.98796 * 1 2 3 28 28 H 1.09000 * 109.46938 * 173.98619 * 1 2 3 29 29 H 1.09000 * 109.47331 * 293.99028 * 1 2 3 30 30 H 0.97004 * 119.99557 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47484 * 89.99461 * 13 12 2 32 32 H 1.09003 * 109.47200 * 209.99592 * 13 12 2 33 33 H 1.08999 * 109.46975 * 329.99655 * 13 12 2 34 34 H 1.08996 * 112.84824 * 48.80422 * 16 14 12 35 35 H 1.08996 * 113.61135 * 334.56875 * 17 16 14 36 36 H 1.08996 * 113.61093 * 105.46999 * 17 16 14 37 37 H 1.08992 * 113.61687 * 270.88188 * 18 17 16 38 38 H 1.07998 * 119.97076 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.98847 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.01685 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.01579 * 359.97438 * 25 19 18 42 42 H 1.08997 * 113.61510 * 254.52900 * 26 16 14 43 43 H 1.08999 * 113.61788 * 25.43329 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1349 -1.7856 -1.2292 6 6 2.3665 0.0127 -2.3559 7 7 2.7171 -0.6121 -3.4587 8 14 2.3208 1.8796 -2.3141 9 1 3.6058 2.3942 -1.7763 10 1 2.1159 2.4006 -3.6895 11 1 1.2047 2.3282 -1.4434 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2959 -0.7461 3.3136 17 6 2.2741 -0.7869 4.4622 18 6 3.4523 -0.5233 5.4147 19 6 3.1240 0.4360 6.5297 20 6 3.6456 0.2310 7.7937 21 6 3.3458 1.1103 8.8172 22 6 2.5237 2.1954 8.5783 23 6 2.0008 2.4016 7.3131 24 9 1.1975 3.4622 7.0782 25 6 2.3065 1.5232 6.2870 26 6 4.1649 0.1379 4.2236 27 1 -0.3633 0.6042 -0.8313 28 1 -0.3633 -1.0220 -0.1077 29 1 -0.3634 0.4178 0.9389 30 1 2.9525 -0.1034 -4.2504 31 1 2.4157 -2.7377 0.9718 32 1 1.6238 -2.2852 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 3.7424 -1.7149 3.0900 35 1 1.5483 0.0256 4.4299 36 1 1.8113 -1.7640 4.6002 37 1 3.9409 -1.4317 5.7667 38 1 4.2878 -0.6168 7.9814 39 1 3.7542 0.9494 9.8040 40 1 2.2892 2.8821 9.3782 41 1 1.9031 1.6859 5.2985 42 1 5.2288 -0.0923 4.1691 43 1 3.9558 1.2033 4.1263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363642711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:32 Heat of formation + Delta-G solvation = -39.261841 kcal Electronic energy + Delta-G solvation = -24908.966555 eV Core-core repulsion = 21255.110149 eV Total energy + Delta-G solvation = -3653.856406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.01113 -40.57862 -39.02143 -37.23786 -35.32505 -32.68713 -31.53353 -30.73451 -30.28042 -26.45516 -26.07851 -25.69646 -25.20535 -23.29717 -22.56692 -20.80977 -19.40015 -18.38910 -17.63571 -17.05726 -16.48894 -16.25953 -16.25174 -15.72446 -15.55406 -15.20805 -14.60976 -14.18645 -14.08819 -13.59408 -13.39482 -13.05991 -12.81550 -12.57141 -12.52718 -12.37586 -12.29348 -12.00525 -11.86341 -11.66216 -11.54872 -11.35914 -11.04780 -10.89170 -10.68140 -10.61524 -10.49788 -10.39178 -9.79993 -9.28011 -9.11314 -8.91606 -8.83142 -8.60462 -7.64979 -6.16951 -4.18847 0.94094 0.99531 3.24798 3.32076 3.35727 3.38969 3.46298 3.84717 4.05082 4.38900 4.40422 4.44855 4.63908 4.67877 4.81554 4.84251 4.92660 5.00699 5.14656 5.19364 5.36462 5.53204 5.58980 5.65648 5.73287 5.79259 5.82693 5.92634 5.95458 5.99882 6.03533 6.07091 6.23987 6.29406 6.35303 6.39570 6.49262 6.58896 6.69315 6.93867 7.08041 7.48494 7.65371 8.16943 8.51439 8.84943 8.97235 9.46152 10.95134 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.003443 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.911991 B = 8131.646676 C = 8656.709808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.587 5.587 13 C 0.086 3.914 14 C 0.512 3.488 15 O -0.557 6.557 16 C -0.135 4.135 17 C -0.114 4.114 18 C -0.078 4.078 19 C -0.035 4.035 20 C -0.128 4.128 21 C -0.091 4.091 22 C -0.163 4.163 23 C 0.101 3.899 24 F -0.140 7.140 25 C -0.148 4.148 26 C -0.106 4.106 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -1.433 23.879 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.121 3.879 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.318 5.318 13 C -0.058 4.058 14 C 0.299 3.701 15 O -0.436 6.436 16 C -0.157 4.157 17 C -0.152 4.152 18 C -0.096 4.096 19 C -0.035 4.035 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.182 4.182 23 C 0.082 3.918 24 F -0.119 7.119 25 C -0.167 4.167 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.196 -0.769 23.525 23.539 hybrid contribution -0.123 0.976 -0.283 1.024 sum 0.072 0.207 23.243 23.244 Atomic orbital electron populations 1.22220 0.98451 1.00853 0.99052 1.19313 0.90719 0.94936 0.82949 0.91855 1.21128 1.44514 0.95667 0.94921 0.90466 1.24965 0.93776 0.98504 0.95235 1.69892 1.45148 1.36058 1.01860 0.86888 0.79913 0.86100 0.76916 1.19635 1.21393 1.18863 1.48300 1.49054 1.11653 1.22770 1.21586 1.01443 0.83145 0.99592 1.20260 0.78914 0.86943 0.83959 1.90625 1.58686 1.17402 1.76929 1.22714 0.98914 1.00925 0.93121 1.23004 0.95906 1.02933 0.93356 1.21604 0.98559 0.97569 0.91869 1.19604 0.94898 0.94493 0.94536 1.21125 1.00908 1.00255 0.92362 1.20973 0.96890 0.93657 0.99436 1.21125 1.00859 1.00433 0.95772 1.17721 0.93486 0.86108 0.94526 1.91512 1.70989 1.54178 1.95209 1.21132 1.00942 0.95179 0.99441 1.22912 0.98828 1.00681 0.91914 0.92664 0.93117 0.95516 0.92404 0.92961 0.92600 0.91168 0.87078 0.89356 0.90342 0.87723 0.85346 0.85146 0.85012 0.84379 0.90760 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.03 37.16 0.34 -2.77 16 2 C 0.22 5.34 2.30 -69.08 -0.16 5.18 16 3 H 0.06 1.69 4.04 -51.93 -0.21 1.48 16 4 C -0.52 -14.45 8.82 -34.44 -0.30 -14.76 16 5 H 0.08 2.25 7.67 -52.49 -0.40 1.85 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 8 Si 0.87 22.45 26.99 -169.99 -4.59 17.87 16 9 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.56 6.81 56.52 0.39 -6.17 16 12 N -0.59 -12.00 2.75 -175.26 -0.48 -12.49 16 13 C 0.09 1.37 9.20 59.85 0.55 1.93 16 14 C 0.51 10.13 7.20 -10.99 -0.08 10.05 16 15 O -0.56 -13.28 15.23 5.56 0.08 -13.19 16 16 C -0.14 -1.87 2.79 -90.96 -0.25 -2.12 16 17 C -0.11 -1.27 6.29 -25.92 -0.16 -1.43 16 18 C -0.08 -0.76 3.98 -90.98 -0.36 -1.13 16 19 C -0.04 -0.36 5.29 -104.63 -0.55 -0.91 16 20 C -0.13 -1.09 9.71 -39.58 -0.38 -1.47 16 21 C -0.09 -0.73 10.04 -39.60 -0.40 -1.12 16 22 C -0.16 -1.53 10.03 -39.51 -0.40 -1.92 16 23 C 0.10 1.18 7.30 -39.41 -0.29 0.89 16 24 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 25 C -0.15 -1.76 8.57 -39.51 -0.34 -2.10 16 26 C -0.11 -1.34 6.87 -25.94 -0.18 -1.52 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.68 5.79 -51.93 -0.30 0.38 16 33 H 0.07 1.11 6.55 -51.93 -0.34 0.77 16 34 H 0.11 1.34 7.85 -51.93 -0.41 0.93 16 35 H 0.09 1.10 6.27 -51.93 -0.33 0.77 16 36 H 0.08 0.72 7.68 -51.93 -0.40 0.32 16 37 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.13 0.79 8.05 -52.49 -0.42 0.37 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.14 1.77 6.67 -52.49 -0.35 1.42 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.47 7.00 -51.93 -0.36 1.10 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -33.11 349.69 -7.96 -41.07 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.99 Total: 0.45 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.07 Total: -11.01 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.29 Total: -38.66 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.59 Total: 17.87 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.11 -7.96 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363642711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.809 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds