Wall clock time and date at job start Tue Mar 31 2020 09:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50703 * 109.47250 * 239.99948 * 2 1 3 5 5 H 1.08001 * 119.99511 * 275.04349 * 4 2 1 6 6 C 1.37878 * 119.99786 * 95.31274 * 4 2 1 7 7 N 1.31513 * 119.99355 * 184.65529 * 6 4 2 8 8 Si 1.86796 * 120.00128 * 4.65422 * 6 4 2 9 9 H 1.48500 * 109.46849 * 85.01707 * 8 6 4 10 10 H 1.48496 * 109.47106 * 205.01336 * 8 6 4 11 11 H 1.48494 * 109.47410 * 325.01785 * 8 6 4 12 12 N 1.46499 * 109.46799 * 119.99708 * 2 1 3 13 13 C 1.46501 * 120.00078 * 60.00521 * 12 2 1 14 14 C 1.34777 * 120.00106 * 239.99781 * 12 2 1 15 15 O 1.21280 * 119.99542 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 12 2 17 17 C 1.53782 * 113.61463 * 277.50022 * 16 14 12 18 18 C 1.53782 * 87.07866 * 220.01812 * 17 16 14 19 19 C 1.50699 * 113.61072 * 139.98176 * 18 17 16 20 20 C 1.38271 * 119.98758 * 142.50285 * 19 18 17 21 21 C 1.38220 * 120.05326 * 179.97438 * 20 19 18 22 22 C 1.38219 * 120.02698 * 0.02562 * 21 20 19 23 23 C 1.38444 * 119.97151 * 359.97438 * 22 21 20 24 24 F 1.35106 * 120.02254 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98691 * 322.22674 * 19 18 17 26 26 C 1.53776 * 113.61232 * 180.02562 * 16 14 12 27 27 H 1.09002 * 109.47072 * 53.98796 * 1 2 3 28 28 H 1.09000 * 109.46938 * 173.98619 * 1 2 3 29 29 H 1.09000 * 109.47331 * 293.99028 * 1 2 3 30 30 H 0.97004 * 119.99557 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47484 * 89.99461 * 13 12 2 32 32 H 1.09003 * 109.47200 * 209.99592 * 13 12 2 33 33 H 1.08999 * 109.46975 * 329.99655 * 13 12 2 34 34 H 1.08996 * 112.84824 * 48.80422 * 16 14 12 35 35 H 1.08996 * 113.61135 * 334.56875 * 17 16 14 36 36 H 1.08996 * 113.61093 * 105.46999 * 17 16 14 37 37 H 1.08992 * 113.61687 * 270.88188 * 18 17 16 38 38 H 1.07998 * 119.97076 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.98847 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.01685 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.01579 * 359.97438 * 25 19 18 42 42 H 1.08997 * 113.61510 * 254.52900 * 26 16 14 43 43 H 1.08999 * 113.61788 * 25.43329 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1349 -1.7856 -1.2292 6 6 2.3665 0.0127 -2.3559 7 7 2.7171 -0.6121 -3.4587 8 14 2.3208 1.8796 -2.3141 9 1 3.6058 2.3942 -1.7763 10 1 2.1159 2.4006 -3.6895 11 1 1.2047 2.3282 -1.4434 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2959 -0.7461 3.3136 17 6 2.2741 -0.7869 4.4622 18 6 3.4523 -0.5233 5.4147 19 6 3.1240 0.4360 6.5297 20 6 3.6456 0.2310 7.7937 21 6 3.3458 1.1103 8.8172 22 6 2.5237 2.1954 8.5783 23 6 2.0008 2.4016 7.3131 24 9 1.1975 3.4622 7.0782 25 6 2.3065 1.5232 6.2870 26 6 4.1649 0.1379 4.2236 27 1 -0.3633 0.6042 -0.8313 28 1 -0.3633 -1.0220 -0.1077 29 1 -0.3634 0.4178 0.9389 30 1 2.9525 -0.1034 -4.2504 31 1 2.4157 -2.7377 0.9718 32 1 1.6238 -2.2852 2.5003 33 1 0.6905 -2.3002 0.9847 34 1 3.7424 -1.7149 3.0900 35 1 1.5483 0.0256 4.4299 36 1 1.8113 -1.7640 4.6002 37 1 3.9409 -1.4317 5.7667 38 1 4.2878 -0.6168 7.9814 39 1 3.7542 0.9494 9.8040 40 1 2.2892 2.8821 9.3782 41 1 1.9031 1.6859 5.2985 42 1 5.2288 -0.0923 4.1691 43 1 3.9558 1.2033 4.1263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363642711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:31 Heat of formation + Delta-G solvation = -58.476478 kcal Electronic energy + Delta-G solvation = -24909.799764 eV Core-core repulsion = 21255.110149 eV Total energy + Delta-G solvation = -3654.689615 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.92115 -41.67000 -40.15063 -38.32780 -37.03604 -34.71648 -32.64285 -31.83666 -31.44326 -27.73937 -27.40315 -27.09595 -26.63279 -24.25117 -23.47538 -22.20756 -20.49726 -19.70462 -19.27142 -18.51844 -17.76234 -17.24540 -17.11646 -17.01452 -16.63920 -16.43231 -16.14937 -15.65754 -15.11373 -14.75616 -14.60522 -14.32928 -14.25488 -13.96793 -13.92468 -13.77391 -13.47391 -13.32963 -13.09067 -12.91123 -12.70528 -12.63446 -12.55119 -12.36611 -12.30765 -11.87541 -11.86803 -11.51225 -11.38339 -11.28229 -10.82588 -10.47247 -9.86652 -9.57743 -9.32789 -8.40555 -6.43336 0.20743 0.26277 1.22583 1.28916 1.37481 1.77353 2.23692 2.35159 2.61683 3.01822 3.26873 3.50043 3.61083 3.69610 3.86084 3.90822 4.01846 4.15001 4.24280 4.32359 4.44164 4.46927 4.48991 4.65257 4.70766 4.72256 4.79213 4.80588 4.86065 4.95440 4.99421 5.04724 5.08180 5.11544 5.17269 5.20793 5.33437 5.36750 5.46469 5.51753 5.68289 5.84159 5.98529 6.15012 6.61731 6.80247 7.22221 7.42345 8.75048 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.003443 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.911991 B = 8131.646676 C = 8656.709808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.219 3.781 3 H 0.035 0.965 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.924 3.076 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.255 1.255 12 N -0.597 5.597 13 C 0.083 3.917 14 C 0.500 3.500 15 O -0.609 6.609 16 C -0.132 4.132 17 C -0.109 4.109 18 C -0.055 4.055 19 C -0.046 4.046 20 C -0.118 4.118 21 C -0.085 4.085 22 C -0.163 4.163 23 C 0.068 3.932 24 F -0.158 7.158 25 C -0.168 4.168 26 C -0.114 4.114 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.268 0.732 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.149 0.851 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -3.306 27.483 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.117 3.883 3 H 0.053 0.947 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.749 3.251 9 H -0.213 1.213 10 H -0.200 1.200 11 H -0.179 1.179 12 N -0.327 5.327 13 C -0.059 4.059 14 C 0.290 3.710 15 O -0.492 6.492 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.072 4.072 19 C -0.046 4.046 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.181 4.181 23 C 0.049 3.951 24 F -0.137 7.137 25 C -0.187 4.187 26 C -0.152 4.152 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.162 0.838 38 H 0.181 0.819 39 H 0.185 0.815 40 H 0.167 0.833 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.519 -2.669 27.149 27.285 hybrid contribution -0.193 1.524 -1.321 2.026 sum 0.325 -1.145 25.829 25.856 Atomic orbital electron populations 1.22072 0.96005 1.01884 0.99786 1.19090 0.92531 0.93389 0.83333 0.94721 1.21370 1.43266 0.94802 0.96135 0.92662 1.25586 0.94235 1.01878 0.95248 1.69980 1.47317 1.37395 1.02587 0.86110 0.79295 0.82227 0.77417 1.21297 1.20010 1.17918 1.48284 1.49289 1.13401 1.21697 1.21829 1.01205 0.80254 1.02629 1.21399 0.77756 0.86636 0.85218 1.90595 1.60330 1.19963 1.78301 1.22856 1.00434 1.01437 0.90559 1.23008 0.95687 1.03925 0.92066 1.21577 0.96946 0.98243 0.90478 1.19710 0.95072 0.94075 0.95782 1.21532 0.99956 1.00914 0.91193 1.21430 0.95529 0.92348 1.00990 1.21431 1.00441 1.01277 0.94962 1.18083 0.94795 0.86319 0.95888 1.91457 1.71735 1.55075 1.95446 1.21101 1.02380 0.96659 0.98520 1.22905 0.99738 0.98834 0.93673 0.93441 0.91601 0.93593 0.92237 0.93393 0.88052 0.91049 0.84315 0.91485 0.87094 0.83782 0.81911 0.81549 0.83347 0.86947 0.89513 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 9.03 71.98 0.65 -5.12 16 2 C 0.22 10.68 2.30 44.25 0.10 10.78 16 3 H 0.03 1.90 4.04 -2.39 -0.01 1.89 16 4 C -0.52 -29.08 8.82 25.60 0.23 -28.85 16 5 H 0.06 3.29 7.67 -2.91 -0.02 3.27 16 6 C 0.03 1.77 5.47 84.66 0.46 2.23 16 7 N -0.93 -57.73 13.96 21.45 0.30 -57.43 16 8 Si 0.92 47.63 26.99 68.60 1.85 49.48 16 9 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 10 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.26 -12.63 6.81 99.48 0.68 -11.95 16 12 N -0.60 -24.17 2.75 -826.79 -2.28 -26.45 16 13 C 0.08 2.48 9.20 127.77 1.18 3.65 16 14 C 0.50 19.84 7.20 87.66 0.63 20.47 16 15 O -0.61 -30.26 15.23 -3.03 -0.05 -30.30 16 16 C -0.13 -3.37 2.79 -11.02 -0.03 -3.40 16 17 C -0.11 -2.12 6.29 31.12 0.20 -1.92 16 18 C -0.05 -0.88 3.98 -11.03 -0.04 -0.92 16 19 C -0.05 -0.83 5.29 -19.87 -0.11 -0.94 16 20 C -0.12 -1.47 9.71 22.27 0.22 -1.25 16 21 C -0.09 -1.01 10.04 22.26 0.22 -0.78 16 22 C -0.16 -2.72 10.03 22.31 0.22 -2.49 16 23 C 0.07 1.61 7.30 22.38 0.16 1.77 16 24 F -0.16 -4.36 17.27 44.97 0.78 -3.58 16 25 C -0.17 -4.03 8.57 22.31 0.19 -3.84 16 26 C -0.11 -2.73 6.87 31.11 0.21 -2.52 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.50 6.92 -2.39 -0.02 2.48 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 2.07 5.79 -2.39 -0.01 2.06 16 33 H 0.07 2.11 6.55 -2.39 -0.02 2.09 16 34 H 0.14 2.81 7.85 -2.39 -0.02 2.79 16 35 H 0.07 1.63 6.27 -2.39 -0.01 1.61 16 36 H 0.11 1.45 7.68 -2.39 -0.02 1.43 16 37 H 0.14 1.28 8.09 -2.39 -0.02 1.26 16 38 H 0.16 0.94 8.05 -2.91 -0.02 0.92 16 39 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 40 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.11 3.18 6.67 -2.91 -0.02 3.16 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.97 7.00 -2.39 -0.02 1.96 16 Total: -1.00 -77.50 349.69 6.09 -71.41 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.99 Total: 10.01 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.50 Total: -13.14 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.98 Total: -83.87 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.30 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.85 Total: 49.48 kcal Total: -77.50 6.09 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363642711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.931 kcal (2) G-P(sol) polarization free energy of solvation -77.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds