Wall clock time and date at job start Tue Mar 31 2020 08:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53780 * 113.61654 * 277.49898 * 16 14 13 18 18 C 1.53781 * 87.08199 * 220.01951 * 17 16 14 19 19 C 1.50698 * 113.61595 * 139.97653 * 18 17 16 20 20 C 1.38266 * 119.98384 * 142.49884 * 19 18 17 21 21 C 1.38233 * 120.05082 * 180.02562 * 20 19 18 22 22 C 1.38214 * 120.02224 * 0.02562 * 21 20 19 23 23 C 1.38444 * 119.97684 * 359.97438 * 22 21 20 24 24 F 1.35095 * 120.02330 * 180.02562 * 23 22 21 25 25 C 1.38178 * 119.98924 * 322.23647 * 19 18 17 26 26 C 1.53786 * 113.61223 * 180.02562 * 16 14 13 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 33 33 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 34 34 H 1.09002 * 112.84687 * 48.80616 * 16 14 13 35 35 H 1.09000 * 113.61445 * 334.56423 * 17 16 14 36 36 H 1.08995 * 113.61258 * 105.47197 * 17 16 14 37 37 H 1.09001 * 113.61452 * 270.88731 * 18 17 16 38 38 H 1.08002 * 119.97773 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.98967 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.01407 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00829 * 359.97438 * 25 19 18 42 42 H 1.09001 * 113.61132 * 254.52918 * 26 16 14 43 43 H 1.09000 * 113.61288 * 25.35275 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 0.5883 4.7691 -2.8121 18 6 -0.7675 5.1192 -3.4478 19 6 -1.3170 6.4501 -3.0031 20 6 -1.9878 7.2564 -3.9040 21 6 -2.4920 8.4778 -3.4978 22 6 -2.3255 8.8944 -2.1905 23 6 -1.6540 8.0878 -1.2876 24 9 -1.4911 8.4939 -0.0095 25 6 -1.1550 6.8617 -1.6941 26 6 -1.3493 3.9240 -2.6752 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8116 0.4042 0.4384 33 1 2.2954 2.1150 -1.9977 34 1 0.2753 2.7090 -3.5592 35 1 0.7597 5.2571 -1.8527 36 1 1.4306 4.8709 -3.4964 37 1 -0.7883 4.9917 -4.5301 38 1 -2.1174 6.9323 -4.9260 39 1 -3.0162 9.1066 -4.2021 40 1 -2.7191 9.8488 -1.8733 41 1 -0.6350 6.2295 -0.9895 42 1 -2.0717 3.3434 -3.2489 43 1 -1.7079 4.1797 -1.6781 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373514336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:27 Heat of formation + Delta-G solvation = -53.281044 kcal Electronic energy + Delta-G solvation = -24751.691422 eV Core-core repulsion = 21097.227098 eV Total energy + Delta-G solvation = -3654.464324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.99006 -40.55325 -39.02188 -37.31609 -35.08514 -32.44900 -31.70812 -31.12246 -30.70950 -27.54183 -26.02429 -25.70967 -23.27824 -22.61789 -22.20644 -20.53953 -19.53779 -19.21934 -18.11668 -17.39865 -16.47667 -16.27478 -16.22416 -15.70622 -15.45002 -15.41267 -14.51183 -14.18576 -13.92506 -13.53065 -13.37308 -13.20430 -13.02970 -12.58277 -12.50383 -12.43407 -12.30177 -11.99977 -11.79918 -11.67261 -11.45986 -10.99243 -10.79889 -10.70878 -10.59810 -10.50613 -10.40189 -9.85340 -9.77937 -9.19180 -9.10689 -9.01796 -8.82715 -8.25123 -8.05101 -6.61031 -4.19986 0.94728 1.00411 3.22539 3.35566 3.41362 3.46392 3.61927 3.96713 4.08195 4.39432 4.44284 4.48246 4.62736 4.66933 4.79914 4.84972 4.93052 5.00206 5.08163 5.16305 5.46365 5.53175 5.66300 5.68351 5.76415 5.82806 5.91177 5.95377 5.99699 6.06552 6.08715 6.10780 6.27509 6.29900 6.46682 6.70245 6.71263 6.80818 6.98782 7.07104 7.38271 7.45639 7.70447 8.24749 8.53119 8.71920 9.03125 9.44787 10.76636 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.003433 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.117520 B = 8155.328046 C = 8774.071261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.039 0.961 5 C -0.629 4.629 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.887 5.887 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.509 3.491 15 O -0.551 6.551 16 C -0.140 4.140 17 C -0.115 4.115 18 C -0.078 4.078 19 C -0.036 4.036 20 C -0.129 4.129 21 C -0.092 4.092 22 C -0.163 4.163 23 C 0.102 3.898 24 F -0.139 7.139 25 C -0.148 4.148 26 C -0.104 4.104 27 H 0.029 0.971 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.271 0.729 33 H 0.392 0.608 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 12.378 -12.949 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.057 0.943 5 C -0.666 4.666 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.518 5.518 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.294 3.706 15 O -0.430 6.430 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.096 4.096 19 C -0.036 4.036 20 C -0.147 4.147 21 C -0.110 4.110 22 C -0.182 4.182 23 C 0.082 3.918 24 F -0.118 7.118 25 C -0.166 4.166 26 C -0.141 4.141 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.091 0.909 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.671 12.054 -10.583 21.738 hybrid contribution 0.335 0.354 -1.824 1.888 sum -14.335 12.407 -12.407 22.658 Atomic orbital electron populations 1.21888 0.97426 0.98770 1.01973 1.22223 0.93664 0.99809 1.01283 1.18986 0.95682 0.88438 0.82263 0.94315 1.21988 0.89819 1.49998 1.04806 0.91991 1.25599 0.96602 0.91672 1.02085 1.70871 1.13927 1.36486 1.30540 0.84231 0.76052 0.77645 0.76482 1.20854 1.20690 1.19935 1.46275 1.14648 1.55754 1.18025 1.20233 0.82565 0.78847 0.88953 1.90649 1.50918 1.59985 1.41450 1.22745 0.98809 0.96767 0.97776 1.22991 0.96303 0.94089 1.01873 1.21600 0.96819 0.90951 1.00259 1.19588 0.96143 0.95540 0.92359 1.21118 0.99207 0.94511 0.99874 1.20970 0.98765 0.96246 0.95002 1.21128 1.02195 1.00860 0.93979 1.17719 1.00247 0.94501 0.79291 1.91515 1.93760 1.90493 1.36037 1.21146 1.02479 0.95604 0.97417 1.22896 0.95035 0.94626 1.01575 0.95201 0.93068 0.93228 0.93258 0.91972 0.91894 0.77555 0.87336 0.89146 0.90354 0.87819 0.85401 0.85157 0.84993 0.84295 0.90915 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.53 37.16 0.32 -2.60 16 2 C -0.13 -2.94 5.37 -26.73 -0.14 -3.08 16 3 C 0.25 5.93 1.84 -69.09 -0.13 5.80 16 4 H 0.04 1.01 6.12 -51.93 -0.32 0.69 16 5 C -0.63 -16.87 8.92 -34.44 -0.31 -17.18 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -26.15 13.70 55.43 0.76 -25.39 16 9 Si 1.03 25.16 26.56 -169.99 -4.51 20.65 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.37 6.34 56.52 0.36 -6.01 16 13 N -0.70 -13.74 5.03 -54.93 -0.28 -14.02 16 14 C 0.51 9.19 5.96 -10.98 -0.07 9.13 16 15 O -0.55 -11.75 13.04 5.55 0.07 -11.68 16 16 C -0.14 -1.78 4.15 -90.96 -0.38 -2.16 16 17 C -0.11 -1.31 7.00 -25.92 -0.18 -1.49 16 18 C -0.08 -0.76 3.98 -90.98 -0.36 -1.12 16 19 C -0.04 -0.37 5.29 -104.63 -0.55 -0.93 16 20 C -0.13 -1.10 9.71 -39.57 -0.38 -1.49 16 21 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 22 C -0.16 -1.56 10.03 -39.51 -0.40 -1.95 16 23 C 0.10 1.22 7.30 -39.42 -0.29 0.93 16 24 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 25 C -0.15 -1.79 8.58 -39.52 -0.34 -2.13 16 26 C -0.10 -1.22 6.87 -25.93 -0.18 -1.39 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 29 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.47 5.77 -51.93 -0.30 1.17 16 32 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 33 H 0.39 6.89 8.53 -40.82 -0.35 6.54 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.19 6.27 -51.93 -0.33 0.86 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.14 1.83 6.67 -52.49 -0.35 1.48 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.39 7.00 -51.93 -0.36 1.03 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -30.94 348.41 -8.67 -39.60 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.12 Total: 6.94 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.88 Total: -19.53 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.48 Total: -39.41 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.51 Total: 20.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.94 -8.67 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373514336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.676 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds