Wall clock time and date at job start Tue Mar 31 2020 08:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53780 * 113.61654 * 277.49898 * 16 14 13 18 18 C 1.53781 * 87.08199 * 220.01951 * 17 16 14 19 19 C 1.50698 * 113.61595 * 139.97653 * 18 17 16 20 20 C 1.38266 * 119.98384 * 142.49884 * 19 18 17 21 21 C 1.38233 * 120.05082 * 180.02562 * 20 19 18 22 22 C 1.38214 * 120.02224 * 0.02562 * 21 20 19 23 23 C 1.38444 * 119.97684 * 359.97438 * 22 21 20 24 24 F 1.35095 * 120.02330 * 180.02562 * 23 22 21 25 25 C 1.38178 * 119.98924 * 322.23647 * 19 18 17 26 26 C 1.53786 * 113.61223 * 180.02562 * 16 14 13 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 33 33 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 34 34 H 1.09002 * 112.84687 * 48.80616 * 16 14 13 35 35 H 1.09000 * 113.61445 * 334.56423 * 17 16 14 36 36 H 1.08995 * 113.61258 * 105.47197 * 17 16 14 37 37 H 1.09001 * 113.61452 * 270.88731 * 18 17 16 38 38 H 1.08002 * 119.97773 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.98967 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.01407 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00829 * 359.97438 * 25 19 18 42 42 H 1.09001 * 113.61132 * 254.52918 * 26 16 14 43 43 H 1.09000 * 113.61288 * 25.35275 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 0.5883 4.7691 -2.8121 18 6 -0.7675 5.1192 -3.4478 19 6 -1.3170 6.4501 -3.0031 20 6 -1.9878 7.2564 -3.9040 21 6 -2.4920 8.4778 -3.4978 22 6 -2.3255 8.8944 -2.1905 23 6 -1.6540 8.0878 -1.2876 24 9 -1.4911 8.4939 -0.0095 25 6 -1.1550 6.8617 -1.6941 26 6 -1.3493 3.9240 -2.6752 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8116 0.4042 0.4384 33 1 2.2954 2.1150 -1.9977 34 1 0.2753 2.7090 -3.5592 35 1 0.7597 5.2571 -1.8527 36 1 1.4306 4.8709 -3.4964 37 1 -0.7883 4.9917 -4.5301 38 1 -2.1174 6.9323 -4.9260 39 1 -3.0162 9.1066 -4.2021 40 1 -2.7191 9.8488 -1.8733 41 1 -0.6350 6.2295 -0.9895 42 1 -2.0717 3.3434 -3.2489 43 1 -1.7079 4.1797 -1.6781 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373514336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:26 Heat of formation + Delta-G solvation = -71.332136 kcal Electronic energy + Delta-G solvation = -24752.474176 eV Core-core repulsion = 21097.227098 eV Total energy + Delta-G solvation = -3655.247078 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93701 -41.61176 -40.17215 -38.39772 -36.83284 -34.47537 -33.19823 -32.16050 -31.46807 -29.32164 -27.16044 -26.62994 -24.50022 -23.95972 -23.37490 -21.93842 -21.17186 -20.33006 -19.71920 -18.69764 -17.57544 -17.26345 -17.14994 -17.02432 -16.65027 -16.49813 -15.87831 -15.59507 -15.22392 -14.77810 -14.53952 -14.52714 -14.35673 -14.12872 -14.02231 -13.71613 -13.54691 -13.40164 -12.73242 -12.69597 -12.62273 -12.53605 -12.42029 -12.28372 -11.86575 -11.79208 -11.60331 -11.50067 -11.38446 -11.24573 -10.50615 -10.42827 -9.88229 -9.75880 -9.59217 -8.82763 -6.41975 0.19276 0.24731 1.42760 1.44974 1.66237 1.81988 2.38936 2.55494 2.61758 2.90770 3.25882 3.52436 3.62723 3.71017 3.84758 3.92760 4.04644 4.20511 4.27810 4.29865 4.31556 4.39116 4.42856 4.56929 4.69110 4.79310 4.83279 4.86163 4.94614 5.01046 5.06430 5.07584 5.15795 5.19741 5.21957 5.29999 5.34489 5.45106 5.53682 5.65897 5.71805 5.73525 5.97152 6.02047 6.54326 6.93209 7.26096 7.52982 8.53650 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.003433 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.117520 B = 8155.328046 C = 8774.071261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.254 3.746 4 H 0.014 0.986 5 C -0.626 4.626 6 H 0.043 0.957 7 C 0.008 3.992 8 N -0.915 5.915 9 Si 1.060 2.940 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.257 1.257 13 N -0.703 5.703 14 C 0.505 3.495 15 O -0.586 6.586 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.057 4.057 19 C -0.047 4.047 20 C -0.118 4.118 21 C -0.085 4.085 22 C -0.162 4.162 23 C 0.068 3.932 24 F -0.159 7.159 25 C -0.169 4.169 26 C -0.106 4.106 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.143 0.857 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.149 0.851 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.456 13.074 -16.177 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.149 3.851 4 H 0.032 0.968 5 C -0.663 4.663 6 H 0.061 0.939 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.883 3.117 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.181 1.181 13 N -0.351 5.351 14 C 0.292 3.708 15 O -0.468 6.468 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.074 4.074 19 C -0.047 4.047 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.181 4.181 23 C 0.049 3.951 24 F -0.137 7.137 25 C -0.188 4.188 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.237 0.763 34 H 0.161 0.839 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.161 0.839 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.830 12.760 -13.841 25.252 hybrid contribution 0.995 0.210 -0.881 1.346 sum -15.835 12.970 -14.722 25.214 Atomic orbital electron populations 1.21754 0.95562 1.00236 1.01340 1.22105 0.95230 0.98433 1.00843 1.18661 0.93362 0.89481 0.83598 0.96783 1.22168 0.91566 1.48631 1.03953 0.93895 1.26588 0.96745 0.91380 1.04828 1.70953 1.14990 1.38844 1.30086 0.83795 0.75873 0.78067 0.73924 1.20389 1.20407 1.18138 1.46142 1.15834 1.56177 1.16953 1.21193 0.81260 0.77746 0.90557 1.90633 1.51782 1.61012 1.43351 1.22878 0.99775 0.97219 0.95515 1.22996 0.98481 0.92780 1.01334 1.21594 0.94410 0.89615 1.01817 1.19726 0.96910 0.96321 0.91759 1.21537 0.97212 0.93928 1.00933 1.21440 0.97746 0.96433 0.94636 1.21434 1.01215 1.01101 0.94349 1.18099 1.02319 0.95465 0.79256 1.91455 1.94154 1.90712 1.37427 1.21105 1.03574 0.95778 0.98326 1.22863 0.94789 0.96012 1.00699 0.92583 0.94659 0.92917 0.92657 0.93430 0.92813 0.76343 0.83912 0.92041 0.88264 0.83872 0.81829 0.81456 0.83308 0.87114 0.88808 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.53 71.98 0.61 -4.61 16 2 C -0.13 -5.66 5.37 30.60 0.16 -5.50 16 3 C 0.25 12.19 1.84 44.25 0.08 12.27 16 4 H 0.01 0.76 6.12 -2.39 -0.01 0.75 16 5 C -0.63 -34.29 8.92 25.60 0.23 -34.06 16 6 H 0.04 2.47 7.96 -2.91 -0.02 2.44 16 7 C 0.01 0.44 5.15 84.66 0.44 0.88 16 8 N -0.92 -55.16 13.70 21.45 0.29 -54.86 16 9 Si 1.06 51.61 26.56 68.60 1.82 53.43 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.71 6.34 99.48 0.63 -11.08 16 13 N -0.70 -27.56 5.03 -446.10 -2.24 -29.81 16 14 C 0.50 18.13 5.96 87.66 0.52 18.65 16 15 O -0.59 -25.52 13.04 -3.04 -0.04 -25.56 16 16 C -0.13 -3.13 4.15 -11.01 -0.05 -3.18 16 17 C -0.12 -2.51 7.00 31.12 0.22 -2.29 16 18 C -0.06 -0.92 3.98 -11.03 -0.04 -0.96 16 19 C -0.05 -0.88 5.29 -19.87 -0.11 -0.98 16 20 C -0.12 -1.52 9.71 22.28 0.22 -1.30 16 21 C -0.08 -1.04 10.04 22.26 0.22 -0.82 16 22 C -0.16 -2.83 10.03 22.31 0.22 -2.61 16 23 C 0.07 1.67 7.30 22.38 0.16 1.83 16 24 F -0.16 -4.58 17.27 44.97 0.78 -3.80 16 25 C -0.17 -4.24 8.58 22.31 0.19 -4.05 16 26 C -0.11 -2.29 6.87 31.11 0.21 -2.07 16 27 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.03 1.49 7.89 -2.39 -0.02 1.47 16 29 H 0.05 2.04 5.63 -2.39 -0.01 2.03 16 30 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.23 5.77 -2.39 -0.01 2.22 16 32 H 0.26 15.74 8.73 -92.71 -0.81 14.93 16 33 H 0.40 13.95 8.53 -92.71 -0.79 13.16 16 34 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 1.68 6.27 -2.39 -0.01 1.67 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.14 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 39 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.11 3.30 6.67 -2.91 -0.02 3.28 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.89 7.00 -2.39 -0.02 1.87 16 Total: -1.00 -70.95 348.41 4.03 -66.92 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.12 Total: 22.46 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 3.30 Total: -28.79 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -1.95 Total: -84.67 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.04 Total: -25.56 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.78 Total: -3.80 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 1.82 Total: 53.43 kcal Total: -70.95 4.03 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373514336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.415 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds