Wall clock time and date at job start Tue Mar 31 2020 08:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99591 * 2 1 4 4 C 1.50708 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.39257 * 119.78084 * 0.02562 * 4 3 2 6 6 C 1.38153 * 119.01310 * 179.97438 * 5 4 3 7 7 N 1.37719 * 120.64289 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47237 * 179.72048 * 8 7 6 10 10 C 1.52993 * 109.47254 * 300.00146 * 9 8 7 11 11 C 1.53008 * 109.47007 * 59.99821 * 9 8 7 12 12 C 1.50696 * 109.46969 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00408 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99883 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99834 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99926 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47155 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47086 * 120.00020 * 16 14 12 19 19 H 1.48500 * 109.46879 * 240.00077 * 16 14 12 20 20 N 1.36508 * 118.71456 * 0.24820 * 6 5 4 21 21 N 1.40065 * 133.37292 * 180.41879 * 20 6 5 22 22 C 1.31065 * 107.03777 * 179.51033 * 21 20 6 23 23 N 1.32725 * 109.62872 * 359.77756 * 22 21 20 24 24 C 1.32860 * 109.73973 * 359.97438 * 23 22 21 25 25 N 1.31645 * 119.78490 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47451 * 300.00215 * 1 2 3 28 28 H 1.09002 * 109.46965 * 60.00661 * 1 2 3 29 29 H 1.08998 * 109.47586 * 59.99784 * 3 2 1 30 30 H 1.09001 * 109.47246 * 299.99487 * 3 2 1 31 31 H 1.08004 * 120.49151 * 0.02562 * 5 4 3 32 32 H 0.97005 * 120.00070 * 179.72429 * 7 6 5 33 33 H 1.09001 * 109.46512 * 299.72417 * 8 7 6 34 34 H 1.08998 * 109.47174 * 59.71539 * 8 7 6 35 35 H 1.09002 * 109.47712 * 59.99463 * 10 9 8 36 36 H 1.08995 * 109.47426 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47145 * 299.99770 * 10 9 8 38 38 H 1.09004 * 109.46786 * 59.99901 * 11 9 8 39 39 H 1.08995 * 109.46766 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47164 * 300.00057 * 11 9 8 41 41 H 0.96999 * 119.99905 * 179.97438 * 15 14 12 42 42 H 1.07997 * 125.18851 * 179.77636 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1067 -0.0729 0.0006 6 6 5.4852 -0.1634 0.0006 7 7 6.1080 -1.3918 0.0011 8 6 5.3076 -2.6189 0.0010 9 6 6.2372 -3.8341 -0.0055 10 6 7.1153 -3.7979 -1.2578 11 6 7.1246 -3.8040 1.2406 12 6 5.4139 -5.0963 -0.0050 13 1 4.3355 -5.0376 -0.0009 14 6 6.0373 -6.3261 -0.0097 15 7 7.3505 -6.3975 -0.0141 16 14 5.0168 -7.8906 -0.0098 17 1 3.5737 -7.5403 -0.0049 18 1 5.3287 -8.6851 -1.2251 19 1 5.3366 -8.6903 1.2000 20 7 6.2182 0.9882 0.0059 21 7 7.5935 1.2531 0.0001 22 6 7.7336 2.5563 -0.0006 23 7 6.5383 3.1332 -0.0004 24 6 5.5906 2.2020 -0.0002 25 7 4.2546 2.2740 0.0002 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6885 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.4988 -0.9656 -0.0004 32 1 7.0766 -1.4445 -0.0029 33 1 4.6820 -2.6446 0.8932 34 1 4.6754 -2.6402 -0.8867 35 1 7.7108 -2.8849 -1.2578 36 1 7.7772 -4.6638 -1.2626 37 1 6.4832 -3.8193 -2.1455 38 1 6.4989 -3.8298 2.1329 39 1 7.7871 -4.6695 1.2358 40 1 7.7201 -2.8910 1.2407 41 1 7.7891 -7.2627 -0.0171 42 1 8.6777 3.0807 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413399847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:18 Heat of formation + Delta-G solvation = 91.587044 kcal Electronic energy + Delta-G solvation = -25177.887656 eV Core-core repulsion = 21581.917996 eV Total energy + Delta-G solvation = -3595.969660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.61897 -39.22428 -38.11247 -37.18157 -35.21088 -32.91098 -31.54072 -31.09281 -29.54495 -28.14128 -26.15537 -25.97161 -25.90068 -25.20760 -23.44249 -22.44654 -21.31112 -19.30034 -18.53097 -17.67304 -17.05022 -16.59620 -16.12491 -15.96977 -15.93653 -15.15525 -14.93644 -14.53530 -14.47120 -14.14685 -13.56996 -13.37102 -13.13228 -12.58788 -12.41591 -12.38259 -12.29828 -11.93411 -11.58202 -11.48660 -11.34953 -11.01204 -10.78767 -10.58605 -10.33211 -10.05579 -10.01422 -9.89435 -9.78045 -9.59710 -9.52790 -9.24268 -8.97634 -8.53284 -7.63797 -6.16297 -4.28212 0.82213 1.05989 1.90276 2.78656 2.95780 3.18351 3.23195 3.28078 3.32064 3.62245 4.00253 4.25295 4.28254 4.69180 4.90243 5.01878 5.08893 5.11015 5.15319 5.24925 5.47408 5.51338 5.68915 5.71274 5.73354 5.91103 6.14950 6.20741 6.39363 6.47482 6.52507 6.65993 6.73117 6.80957 6.86865 6.99799 7.18983 7.36829 7.44618 7.55759 7.79528 7.82716 7.96619 8.14882 8.19852 8.71950 9.38841 10.85293 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004357 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.839336 B = 6424.386610 C = 8360.559462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.116 3.884 4 C 0.261 3.739 5 C -0.310 4.310 6 C 0.490 3.510 7 N -0.680 5.680 8 C 0.125 3.875 9 C 0.059 3.941 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.883 5.883 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.364 5.364 21 N -0.353 5.353 22 C 0.251 3.749 23 N -0.549 5.549 24 C 0.490 3.510 25 N -0.523 5.523 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.176 0.824 32 H 0.416 0.584 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.005 0.995 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.089 0.911 40 H 0.005 0.995 41 H 0.261 0.739 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 11.681 0.011 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.038 3.962 4 C 0.106 3.894 5 C -0.344 4.344 6 C 0.260 3.740 7 N -0.304 5.304 8 C 0.004 3.996 9 C 0.058 3.942 10 C -0.192 4.192 11 C -0.192 4.192 12 C -0.549 4.549 13 H 0.079 0.921 14 C -0.134 4.134 15 N -0.521 5.521 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.151 5.151 21 N -0.183 5.183 22 C -0.052 4.052 23 N -0.284 5.284 24 C 0.129 3.871 25 N -0.249 5.249 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.193 0.807 32 H 0.255 0.745 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.024 0.976 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.107 0.893 40 H 0.024 0.976 41 H 0.072 0.928 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.572 11.953 0.019 14.150 hybrid contribution 0.079 -1.485 -0.005 1.487 sum -7.494 10.468 0.013 12.874 Atomic orbital electron populations 1.22792 0.79943 1.03389 1.00176 1.87885 1.20300 1.26264 1.95582 1.20937 0.86784 0.85636 1.02815 1.20850 0.95368 0.87370 0.85830 1.21059 0.89025 1.01366 1.22946 1.18294 0.88507 0.79085 0.88071 1.45472 1.11385 1.02242 1.71344 1.22259 0.94807 0.81273 1.01311 1.18377 0.92343 0.90301 0.93175 1.21865 0.99864 1.00011 0.97420 1.21869 0.99852 1.00023 0.97416 1.20921 0.92754 0.89426 1.51756 0.92081 1.24889 0.94958 0.99071 0.94505 1.69805 1.07659 1.24719 1.49873 0.86474 0.80475 0.83044 0.77649 1.19649 1.20988 1.20983 1.48812 1.07430 1.07400 1.51447 1.78332 0.88437 1.17637 1.33924 1.26108 0.97362 0.88343 0.93349 1.70911 0.97041 1.27971 1.32487 1.22578 0.90602 0.79931 0.93954 1.67416 0.99330 1.30271 1.27854 0.89006 0.93747 0.93755 0.89849 0.89841 0.80682 0.74482 0.91288 0.91300 0.97559 0.89263 0.95181 0.95174 0.89254 0.97566 0.92836 0.75727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.09 9.19 -35.23 -0.32 -4.41 16 3 C 0.12 1.19 6.48 36.01 0.23 1.42 16 4 C 0.26 3.69 6.81 -82.29 -0.56 3.13 16 5 C -0.31 -4.65 8.65 -39.23 -0.34 -4.99 16 6 C 0.49 8.21 7.76 -152.98 -1.19 7.02 16 7 N -0.68 -11.61 5.08 -60.01 -0.30 -11.91 16 8 C 0.13 2.26 3.74 -4.04 -0.02 2.24 16 9 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 10 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 11 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 12 C -0.51 -12.26 8.01 -34.44 -0.28 -12.54 16 13 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 15 N -0.88 -22.57 9.35 55.43 0.52 -22.05 16 16 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 N -0.36 -6.41 3.93 -12.98 -0.05 -6.46 16 21 N -0.35 -5.97 12.76 29.26 0.37 -5.60 16 22 C 0.25 3.68 12.98 -91.97 -1.19 2.49 16 23 N -0.55 -9.46 11.26 -15.66 -0.18 -9.64 16 24 C 0.49 8.75 9.00 -323.15 -2.91 5.84 16 25 N -0.52 -8.59 10.38 -10.18 -0.11 -8.69 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.18 2.50 5.77 -52.48 -0.30 2.20 16 32 H 0.42 7.43 6.27 -40.82 -0.26 7.17 16 33 H 0.07 1.21 7.97 -51.93 -0.41 0.80 16 34 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 35 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 36 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 40 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 41 H 0.26 6.47 8.31 -40.82 -0.34 6.14 16 42 H 0.23 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -28.51 343.97 -10.26 -38.77 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.65 Total: 6.74 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -4.70 Total: 3.53 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.25 Total: -64.36 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.32 Total: -4.41 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.51 -10.26 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413399847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.356 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds