Wall clock time and date at job start Tue Mar 31 2020 08:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99591 * 2 1 4 4 C 1.50708 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.39257 * 119.78084 * 0.02562 * 4 3 2 6 6 C 1.38153 * 119.01310 * 179.97438 * 5 4 3 7 7 N 1.37719 * 120.64289 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47237 * 179.72048 * 8 7 6 10 10 C 1.52993 * 109.47254 * 300.00146 * 9 8 7 11 11 C 1.53008 * 109.47007 * 59.99821 * 9 8 7 12 12 C 1.50696 * 109.46969 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00408 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99883 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99834 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99926 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47155 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47086 * 120.00020 * 16 14 12 19 19 H 1.48500 * 109.46879 * 240.00077 * 16 14 12 20 20 N 1.36508 * 118.71456 * 0.24820 * 6 5 4 21 21 N 1.40065 * 133.37292 * 180.41879 * 20 6 5 22 22 C 1.31065 * 107.03777 * 179.51033 * 21 20 6 23 23 N 1.32725 * 109.62872 * 359.77756 * 22 21 20 24 24 C 1.32860 * 109.73973 * 359.97438 * 23 22 21 25 25 N 1.31645 * 119.78490 * 179.97438 * 4 3 2 26 26 H 1.08998 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47451 * 300.00215 * 1 2 3 28 28 H 1.09002 * 109.46965 * 60.00661 * 1 2 3 29 29 H 1.08998 * 109.47586 * 59.99784 * 3 2 1 30 30 H 1.09001 * 109.47246 * 299.99487 * 3 2 1 31 31 H 1.08004 * 120.49151 * 0.02562 * 5 4 3 32 32 H 0.97005 * 120.00070 * 179.72429 * 7 6 5 33 33 H 1.09001 * 109.46512 * 299.72417 * 8 7 6 34 34 H 1.08998 * 109.47174 * 59.71539 * 8 7 6 35 35 H 1.09002 * 109.47712 * 59.99463 * 10 9 8 36 36 H 1.08995 * 109.47426 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47145 * 299.99770 * 10 9 8 38 38 H 1.09004 * 109.46786 * 59.99901 * 11 9 8 39 39 H 1.08995 * 109.46766 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47164 * 300.00057 * 11 9 8 41 41 H 0.96999 * 119.99905 * 179.97438 * 15 14 12 42 42 H 1.07997 * 125.18851 * 179.77636 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1067 -0.0729 0.0006 6 6 5.4852 -0.1634 0.0006 7 7 6.1080 -1.3918 0.0011 8 6 5.3076 -2.6189 0.0010 9 6 6.2372 -3.8341 -0.0055 10 6 7.1153 -3.7979 -1.2578 11 6 7.1246 -3.8040 1.2406 12 6 5.4139 -5.0963 -0.0050 13 1 4.3355 -5.0376 -0.0009 14 6 6.0373 -6.3261 -0.0097 15 7 7.3505 -6.3975 -0.0141 16 14 5.0168 -7.8906 -0.0098 17 1 3.5737 -7.5403 -0.0049 18 1 5.3287 -8.6851 -1.2251 19 1 5.3366 -8.6903 1.2000 20 7 6.2182 0.9882 0.0059 21 7 7.5935 1.2531 0.0001 22 6 7.7336 2.5563 -0.0006 23 7 6.5383 3.1332 -0.0004 24 6 5.5906 2.2020 -0.0002 25 7 4.2546 2.2740 0.0002 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6885 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.4988 -0.9656 -0.0004 32 1 7.0766 -1.4445 -0.0029 33 1 4.6820 -2.6446 0.8932 34 1 4.6754 -2.6402 -0.8867 35 1 7.7108 -2.8849 -1.2578 36 1 7.7772 -4.6638 -1.2626 37 1 6.4832 -3.8193 -2.1455 38 1 6.4989 -3.8298 2.1329 39 1 7.7871 -4.6695 1.2358 40 1 7.7201 -2.8910 1.2407 41 1 7.7891 -7.2627 -0.0171 42 1 8.6777 3.0807 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413399847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:18 Heat of formation + Delta-G solvation = 78.093441 kcal Electronic energy + Delta-G solvation = -25178.472783 eV Core-core repulsion = 21581.917996 eV Total energy + Delta-G solvation = -3596.554786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.84602 -40.39516 -39.24674 -38.29621 -36.67715 -34.36936 -32.87461 -32.51925 -30.82818 -29.03417 -27.67163 -27.66796 -26.92945 -26.71762 -24.72186 -23.52374 -22.58683 -20.83776 -19.91915 -18.88487 -18.27124 -17.78277 -17.60535 -16.91267 -16.73519 -16.69195 -16.13020 -15.98979 -15.57427 -15.53227 -14.91169 -14.64733 -14.22760 -14.11171 -13.83237 -13.69628 -13.36510 -13.14879 -13.10802 -12.87210 -12.69119 -12.55652 -12.33585 -12.20605 -12.13116 -11.59071 -11.32508 -11.24395 -10.99165 -10.91986 -10.77352 -10.75371 -10.41402 -10.35363 -8.91765 -8.03305 -6.19857 -0.36441 -0.17359 0.66915 1.44410 1.49529 1.57538 1.61402 1.86166 2.07712 2.40920 2.47217 3.09746 3.12773 3.22256 3.63073 3.86560 4.12538 4.19124 4.33649 4.40897 4.43471 4.48845 4.60991 4.66104 4.70159 4.72794 4.81752 4.92993 4.94665 5.00812 5.03518 5.09622 5.27237 5.35121 5.37322 5.57230 5.66215 5.73703 6.03483 6.05204 6.18921 6.20370 6.37538 6.57196 6.86463 6.93211 7.49229 8.96411 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004357 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.839336 B = 6424.386610 C = 8360.559462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.119 3.881 4 C 0.264 3.736 5 C -0.304 4.304 6 C 0.476 3.524 7 N -0.684 5.684 8 C 0.142 3.858 9 C 0.053 3.947 10 C -0.123 4.123 11 C -0.123 4.123 12 C -0.519 4.519 13 H 0.063 0.937 14 C 0.025 3.975 15 N -0.904 5.904 16 Si 0.948 3.052 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.287 1.287 20 N -0.372 5.372 21 N -0.378 5.378 22 C 0.259 3.741 23 N -0.569 5.569 24 C 0.471 3.529 25 N -0.532 5.532 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.019 0.981 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 12.744 0.013 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C 0.042 3.958 4 C 0.109 3.891 5 C -0.337 4.337 6 C 0.248 3.752 7 N -0.309 5.309 8 C 0.020 3.980 9 C 0.052 3.948 10 C -0.181 4.181 11 C -0.181 4.181 12 C -0.558 4.558 13 H 0.081 0.919 14 C -0.175 4.175 15 N -0.543 5.543 16 Si 0.775 3.225 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.214 1.214 20 N -0.158 5.158 21 N -0.209 5.209 22 C -0.042 4.042 23 N -0.305 5.305 24 C 0.110 3.890 25 N -0.258 5.258 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.201 0.799 32 H 0.249 0.751 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.224 13.029 0.021 15.964 hybrid contribution 0.541 -1.738 -0.006 1.820 sum -8.683 11.292 0.015 14.244 Atomic orbital electron populations 1.22990 0.78109 1.04180 1.01573 1.87841 1.22270 1.26457 1.95842 1.21066 0.84046 0.86048 1.04617 1.21486 0.97220 0.86444 0.83954 1.21274 0.88399 1.02191 1.21880 1.18505 0.89041 0.78782 0.88871 1.45214 1.10853 1.02140 1.72682 1.21911 0.93871 0.80366 1.01836 1.18357 0.92595 0.91121 0.92707 1.21705 0.99489 0.99376 0.97553 1.21709 0.99480 0.99388 0.97545 1.21256 0.93130 0.90499 1.50891 0.91913 1.25522 0.95720 1.01542 0.94715 1.69942 1.08717 1.24859 1.50807 0.85649 0.79635 0.80132 0.77049 1.18853 1.21363 1.21354 1.48881 1.07720 1.07500 1.51739 1.78297 0.88442 1.18940 1.35208 1.27015 0.98224 0.87765 0.91214 1.70928 0.97828 1.28416 1.33306 1.22954 0.91330 0.80275 0.94418 1.67514 0.98922 1.31118 1.28293 0.88605 0.92347 0.92355 0.87845 0.87832 0.79897 0.75070 0.90771 0.90771 0.96176 0.92030 0.95375 0.95376 0.92020 0.96186 0.93220 0.71341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.63 9.19 -148.98 -1.37 -9.00 16 3 C 0.12 2.12 6.48 71.24 0.46 2.58 16 4 C 0.26 6.98 6.81 42.83 0.29 7.27 16 5 C -0.30 -8.68 8.65 22.49 0.19 -8.49 16 6 C 0.48 15.52 7.76 131.99 1.02 16.55 16 7 N -0.68 -22.82 5.08 -343.76 -1.75 -24.56 16 8 C 0.14 4.97 3.74 86.38 0.32 5.30 16 9 C 0.05 2.25 0.50 -52.93 -0.03 2.22 16 10 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 11 C -0.12 -5.36 8.08 71.98 0.58 -4.77 16 12 C -0.52 -24.74 8.01 25.60 0.21 -24.53 16 13 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.02 1.22 5.15 84.66 0.44 1.66 16 15 N -0.90 -46.94 9.35 21.45 0.20 -46.74 16 16 Si 0.95 40.04 29.54 68.60 2.03 42.06 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 20 N -0.37 -12.83 3.93 -194.98 -0.77 -13.59 16 21 N -0.38 -12.48 12.76 -61.36 -0.78 -13.26 16 22 C 0.26 7.21 12.98 180.82 2.35 9.56 16 23 N -0.57 -18.99 11.26 -203.47 -2.29 -21.28 16 24 C 0.47 16.39 9.00 261.61 2.35 18.75 16 25 N -0.53 -16.75 10.38 -186.12 -1.93 -18.69 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.18 4.90 5.77 -2.91 -0.02 4.88 16 32 H 0.41 14.48 6.27 -92.70 -0.58 13.90 16 33 H 0.07 2.51 7.97 -2.39 -0.02 2.49 16 34 H 0.07 2.50 7.94 -2.39 -0.02 2.49 16 35 H 0.02 0.78 6.86 -2.39 -0.02 0.76 16 36 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 40 H 0.02 0.77 6.86 -2.39 -0.02 0.76 16 41 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 42 H 0.27 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -61.07 343.97 3.83 -57.24 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.47 Total: 24.94 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 10.02 Total: 22.88 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -7.32 Total: -138.12 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -1.37 Total: -9.00 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -61.07 3.83 -57.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413399847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.330 kcal (2) G-P(sol) polarization free energy of solvation -61.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds