Wall clock time and date at job start Tue Mar 31 2020 09:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47328 * 2 1 4 4 N 1.46897 * 109.47031 * 120.00576 * 2 1 3 5 5 C 1.46902 * 110.99842 * 274.99604 * 4 2 1 6 6 C 1.53004 * 109.47360 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46807 * 180.02562 * 6 5 4 8 8 S 1.81001 * 109.46546 * 180.02562 * 7 6 5 9 9 C 1.76196 * 99.99844 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00228 * 359.97438 * 9 8 7 11 11 C 1.38808 * 120.00159 * 180.02562 * 9 8 7 12 12 N 1.31629 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99779 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46792 * 90.00441 * 13 11 9 15 15 H 1.48501 * 109.47133 * 210.00217 * 13 11 9 16 16 H 1.48500 * 109.47307 * 330.00302 * 13 11 9 17 17 C 1.50706 * 109.47045 * 239.99949 * 2 1 3 18 18 C 1.38233 * 120.00109 * 279.72653 * 17 2 1 19 19 C 1.38239 * 119.99759 * 179.74218 * 18 17 2 20 20 C 1.38234 * 119.99986 * 0.53603 * 19 18 17 21 21 C 1.50696 * 120.00147 * 179.76856 * 20 19 18 22 22 C 1.52998 * 117.49677 * 8.59164 * 21 20 19 23 23 C 1.52994 * 60.00274 * 252.51296 * 22 21 20 24 24 C 1.38238 * 120.00067 * 359.73675 * 20 19 18 25 25 C 1.38235 * 120.00108 * 359.97438 * 24 20 19 26 26 H 1.08992 * 109.47081 * 299.99912 * 1 2 3 27 27 H 1.09003 * 109.47098 * 59.99989 * 1 2 3 28 28 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.00897 * 111.00413 * 151.05013 * 4 2 1 30 30 H 1.09001 * 109.47594 * 300.00356 * 5 4 2 31 31 H 1.09003 * 109.46874 * 60.00112 * 5 4 2 32 32 H 1.08993 * 109.47039 * 300.00085 * 6 5 4 33 33 H 1.08995 * 109.46391 * 60.00322 * 6 5 4 34 34 H 1.09002 * 109.47013 * 299.99947 * 7 6 5 35 35 H 1.08989 * 109.47436 * 60.00055 * 7 6 5 36 36 H 0.96996 * 120.00542 * 179.97438 * 12 11 9 37 37 H 1.08004 * 119.99934 * 0.02562 * 18 17 2 38 38 H 1.08000 * 119.99962 * 180.29747 * 19 18 17 39 39 H 1.09005 * 115.55164 * 154.30511 * 21 20 19 40 40 H 1.08997 * 117.50209 * 0.02562 * 22 21 20 41 41 H 1.09012 * 117.49301 * 145.02344 * 22 21 20 42 42 H 1.08996 * 117.50398 * 252.51078 * 23 22 21 43 43 H 1.08998 * 117.49847 * 107.48887 * 23 22 21 44 44 H 1.08000 * 120.00559 * 180.02562 * 24 20 19 45 45 H 1.07999 * 120.00165 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5951 -0.5334 3.5745 7 6 2.6599 0.4196 4.7697 8 16 3.2669 -0.4744 6.2217 9 6 3.2425 0.8239 7.4126 10 1 2.9146 1.8125 7.1271 11 6 3.6458 0.5764 8.7176 12 7 3.6280 1.5464 9.6072 13 14 4.2136 -1.1334 9.2113 14 1 5.6790 -1.2484 9.0000 15 1 3.9005 -1.3643 10.6444 16 1 3.5127 -2.1464 8.3820 17 6 2.0324 -0.7105 -1.2305 18 6 2.0721 -2.0918 -1.2633 19 6 2.5279 -2.7435 -2.3940 20 6 2.9543 -2.0137 -3.4878 21 6 3.4561 -2.7240 -4.7185 22 6 3.2830 -4.2430 -4.7773 23 6 4.6718 -3.6393 -4.5595 24 6 2.9199 -0.6321 -3.4529 25 6 2.4585 0.0195 -2.3244 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.9173 -1.1206 1.0287 30 1 2.7589 1.0461 2.1183 31 1 1.0871 0.6162 2.5525 32 1 1.9183 -1.3567 3.8029 33 1 3.5903 -0.9274 3.3690 34 1 3.3364 1.2432 4.5414 35 1 1.6645 0.8133 4.9749 36 1 3.9094 1.3735 10.5192 37 1 1.7427 -2.6620 -0.4072 38 1 2.5544 -3.8228 -2.4214 39 1 3.3620 -2.1698 -5.6524 40 1 2.8058 -4.7285 -3.9260 41 1 3.0747 -4.6885 -5.7502 42 1 5.3773 -3.6876 -5.3889 43 1 5.1086 -3.7276 -3.5648 44 1 3.2527 -0.0618 -4.3075 45 1 2.4320 1.0988 -2.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419362427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:19 Heat of formation + Delta-G solvation = 26.528644 kcal Electronic energy + Delta-G solvation = -21112.396413 eV Core-core repulsion = 18027.606072 eV Total energy + Delta-G solvation = -3084.790340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18000 -37.99475 -36.40188 -33.69693 -32.42560 -31.16722 -30.61740 -29.05039 -25.84249 -25.30533 -23.95693 -23.35103 -22.57224 -21.29020 -21.05002 -20.13605 -17.46121 -17.26083 -16.42443 -15.69442 -15.48474 -15.10516 -14.95886 -14.69477 -14.48673 -14.04584 -13.95073 -13.69471 -13.28687 -12.94104 -12.86324 -12.65369 -12.34332 -12.22616 -11.97398 -11.83071 -11.66378 -11.49766 -11.21916 -11.05602 -11.03541 -10.96568 -10.94762 -10.69402 -10.46907 -10.11526 -9.76084 -9.14013 -8.99410 -8.66678 -8.54626 -8.52631 -6.92670 -6.27239 -3.99267 1.02186 1.18798 3.01933 3.25028 3.31022 3.46810 3.57586 3.72893 4.08061 4.16699 4.32951 4.43405 4.50848 4.58370 4.66028 4.79823 4.82483 4.87027 5.09975 5.11471 5.16267 5.19778 5.25248 5.27161 5.39548 5.41764 5.47207 5.54840 5.65250 5.67474 5.69622 5.71571 5.79906 5.84114 5.85458 6.00186 6.13458 6.19446 6.22907 6.35929 6.37556 6.50637 6.65533 6.76121 6.99944 7.30763 7.96510 8.45383 9.18686 10.82238 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.002092 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.272969 B =13379.125689 C =14095.223159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.124 3.876 3 H 0.051 0.949 4 N -0.683 5.683 5 C 0.063 3.937 6 C -0.098 4.098 7 C -0.082 4.082 8 S -0.216 6.216 9 C -0.502 4.502 10 H 0.087 0.913 11 C 0.091 3.909 12 N -0.882 5.882 13 Si 0.862 3.138 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.237 1.237 17 C -0.092 4.092 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.055 4.055 21 C -0.119 4.119 22 C -0.177 4.177 23 C -0.170 4.170 24 C -0.116 4.116 25 C -0.110 4.110 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.342 0.658 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.270 0.730 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -7.717 -30.442 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 H 0.069 0.931 4 N -0.315 5.315 5 C -0.068 4.068 6 C -0.137 4.137 7 C -0.231 4.231 8 S 0.012 5.988 9 C -0.650 4.650 10 H 0.105 0.895 11 C -0.117 4.117 12 N -0.519 5.519 13 Si 0.687 3.313 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.161 1.161 17 C -0.092 4.092 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.055 4.055 21 C -0.137 4.137 22 C -0.214 4.214 23 C -0.207 4.207 24 C -0.134 4.134 25 C -0.129 4.129 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.798 -8.978 -29.941 31.384 hybrid contribution 0.749 1.360 0.113 1.556 sum -2.049 -7.619 -29.828 30.854 Atomic orbital electron populations 1.21777 0.93546 1.02628 1.01312 1.20432 0.96134 0.95184 0.86853 0.93146 1.60610 1.33562 1.33439 1.03864 1.22064 1.00890 0.93663 0.90145 1.21292 1.01743 0.98399 0.92262 1.23004 1.03155 1.00453 0.96444 1.84155 1.86967 1.21641 1.06018 1.22133 1.51125 0.96300 0.95397 0.89451 1.24808 0.94056 0.97575 0.95300 1.69937 1.46064 1.32115 1.03789 0.86661 0.80449 0.85121 0.79056 1.19410 1.20125 1.16132 1.19979 0.99574 0.94106 0.95538 1.21077 0.98318 0.93909 0.98005 1.21064 0.99949 0.99879 0.93162 1.19125 0.98943 0.93334 0.94080 1.21044 1.03082 0.92287 0.97300 1.23072 1.00100 0.94748 1.03493 1.23033 0.91000 1.03172 1.03457 1.20868 1.00603 0.93596 0.98295 1.21017 0.98996 0.99723 0.93165 0.92204 0.92713 0.91817 0.83900 0.95188 0.90835 0.90616 0.91780 0.91655 0.91355 0.92000 0.84928 0.86032 0.87097 0.88241 0.88477 0.88483 0.88466 0.86196 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.39 37.16 0.35 -0.95 16 2 C 0.12 1.24 2.82 -68.86 -0.19 1.04 16 3 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 4 N -0.68 -7.66 5.69 -107.94 -0.61 -8.28 16 5 C 0.06 0.80 5.48 -3.82 -0.02 0.78 16 6 C -0.10 -1.51 5.48 -26.73 -0.15 -1.66 16 7 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 8 S -0.22 -5.31 19.41 -107.50 -2.09 -7.40 16 9 C -0.50 -14.72 10.04 30.94 0.31 -14.41 16 10 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 11 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 12 N -0.88 -26.95 13.97 55.49 0.78 -26.18 16 13 Si 0.86 21.74 27.74 -169.99 -4.71 17.02 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 17 C -0.09 -0.89 4.72 -104.62 -0.49 -1.38 16 18 C -0.09 -0.91 9.00 -39.58 -0.36 -1.26 16 19 C -0.12 -1.09 9.30 -39.58 -0.37 -1.46 16 20 C -0.05 -0.47 5.61 -104.62 -0.59 -1.06 16 21 C -0.12 -0.83 6.04 -91.77 -0.55 -1.38 16 22 C -0.18 -1.06 9.86 -26.74 -0.26 -1.33 16 23 C -0.17 -1.06 10.16 -26.73 -0.27 -1.33 16 24 C -0.12 -0.99 9.74 -39.58 -0.39 -1.37 16 25 C -0.11 -1.00 9.67 -39.58 -0.38 -1.38 16 26 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.34 3.76 7.98 -39.29 -0.31 3.44 16 30 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.07 0.94 7.44 -51.93 -0.39 0.55 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.28 8.14 -51.91 -0.42 0.85 16 35 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 36 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.13 1.26 7.71 -52.48 -0.40 0.86 16 38 H 0.12 0.91 6.02 -52.49 -0.32 0.60 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.59 6.18 -51.93 -0.32 0.27 16 41 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.92 8.04 -52.49 -0.42 0.50 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -30.92 378.60 -11.78 -42.70 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.59 Total: 2.37 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -3.25 Total: -25.95 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.16 Total: -34.46 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -2.09 Total: -7.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.92 -11.78 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419362427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.229 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds