Wall clock time and date at job start Tue Mar 31 2020 09:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47328 * 2 1 4 4 N 1.46897 * 109.47031 * 120.00576 * 2 1 3 5 5 C 1.46902 * 110.99842 * 274.99604 * 4 2 1 6 6 C 1.53004 * 109.47360 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46807 * 180.02562 * 6 5 4 8 8 S 1.81001 * 109.46546 * 180.02562 * 7 6 5 9 9 C 1.76196 * 99.99844 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00228 * 359.97438 * 9 8 7 11 11 C 1.38808 * 120.00159 * 180.02562 * 9 8 7 12 12 N 1.31629 * 120.00097 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99779 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46792 * 90.00441 * 13 11 9 15 15 H 1.48501 * 109.47133 * 210.00217 * 13 11 9 16 16 H 1.48500 * 109.47307 * 330.00302 * 13 11 9 17 17 C 1.50706 * 109.47045 * 239.99949 * 2 1 3 18 18 C 1.38233 * 120.00109 * 279.72653 * 17 2 1 19 19 C 1.38239 * 119.99759 * 179.74218 * 18 17 2 20 20 C 1.38234 * 119.99986 * 0.53603 * 19 18 17 21 21 C 1.50696 * 120.00147 * 179.76856 * 20 19 18 22 22 C 1.52998 * 117.49677 * 8.59164 * 21 20 19 23 23 C 1.52994 * 60.00274 * 252.51296 * 22 21 20 24 24 C 1.38238 * 120.00067 * 359.73675 * 20 19 18 25 25 C 1.38235 * 120.00108 * 359.97438 * 24 20 19 26 26 H 1.08992 * 109.47081 * 299.99912 * 1 2 3 27 27 H 1.09003 * 109.47098 * 59.99989 * 1 2 3 28 28 H 1.08999 * 109.47079 * 179.97438 * 1 2 3 29 29 H 1.00897 * 111.00413 * 151.05013 * 4 2 1 30 30 H 1.09001 * 109.47594 * 300.00356 * 5 4 2 31 31 H 1.09003 * 109.46874 * 60.00112 * 5 4 2 32 32 H 1.08993 * 109.47039 * 300.00085 * 6 5 4 33 33 H 1.08995 * 109.46391 * 60.00322 * 6 5 4 34 34 H 1.09002 * 109.47013 * 299.99947 * 7 6 5 35 35 H 1.08989 * 109.47436 * 60.00055 * 7 6 5 36 36 H 0.96996 * 120.00542 * 179.97438 * 12 11 9 37 37 H 1.08004 * 119.99934 * 0.02562 * 18 17 2 38 38 H 1.08000 * 119.99962 * 180.29747 * 19 18 17 39 39 H 1.09005 * 115.55164 * 154.30511 * 21 20 19 40 40 H 1.08997 * 117.50209 * 0.02562 * 22 21 20 41 41 H 1.09012 * 117.49301 * 145.02344 * 22 21 20 42 42 H 1.08996 * 117.50398 * 252.51078 * 23 22 21 43 43 H 1.08998 * 117.49847 * 107.48887 * 23 22 21 44 44 H 1.08000 * 120.00559 * 180.02562 * 24 20 19 45 45 H 1.07999 * 120.00165 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5951 -0.5334 3.5745 7 6 2.6599 0.4196 4.7697 8 16 3.2669 -0.4744 6.2217 9 6 3.2425 0.8239 7.4126 10 1 2.9146 1.8125 7.1271 11 6 3.6458 0.5764 8.7176 12 7 3.6280 1.5464 9.6072 13 14 4.2136 -1.1334 9.2113 14 1 5.6790 -1.2484 9.0000 15 1 3.9005 -1.3643 10.6444 16 1 3.5127 -2.1464 8.3820 17 6 2.0324 -0.7105 -1.2305 18 6 2.0721 -2.0918 -1.2633 19 6 2.5279 -2.7435 -2.3940 20 6 2.9543 -2.0137 -3.4878 21 6 3.4561 -2.7240 -4.7185 22 6 3.2830 -4.2430 -4.7773 23 6 4.6718 -3.6393 -4.5595 24 6 2.9199 -0.6321 -3.4529 25 6 2.4585 0.0195 -2.3244 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.9173 -1.1206 1.0287 30 1 2.7589 1.0461 2.1183 31 1 1.0871 0.6162 2.5525 32 1 1.9183 -1.3567 3.8029 33 1 3.5903 -0.9274 3.3690 34 1 3.3364 1.2432 4.5414 35 1 1.6645 0.8133 4.9749 36 1 3.9094 1.3735 10.5192 37 1 1.7427 -2.6620 -0.4072 38 1 2.5544 -3.8228 -2.4214 39 1 3.3620 -2.1698 -5.6524 40 1 2.8058 -4.7285 -3.9260 41 1 3.0747 -4.6885 -5.7502 42 1 5.3773 -3.6876 -5.3889 43 1 5.1086 -3.7276 -3.5648 44 1 3.2527 -0.0618 -4.3075 45 1 2.4320 1.0988 -2.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419362427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:19 Heat of formation + Delta-G solvation = 11.089483 kcal Electronic energy + Delta-G solvation = -21113.065905 eV Core-core repulsion = 18027.606072 eV Total energy + Delta-G solvation = -3085.459833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83276 -38.70356 -37.17649 -34.78518 -34.67735 -31.82764 -31.56527 -29.83516 -27.98919 -26.48288 -24.78912 -23.97472 -23.07961 -22.45890 -21.81152 -20.81493 -19.60953 -17.95445 -17.22449 -17.11505 -16.60021 -16.39940 -15.98714 -15.67790 -15.49148 -15.19257 -14.92648 -14.70740 -14.41528 -14.03113 -14.01526 -13.71227 -13.44377 -13.38814 -13.08827 -12.99624 -12.78808 -12.53463 -12.47553 -12.35807 -12.04961 -11.94473 -11.78915 -11.64149 -11.57309 -11.42390 -11.20710 -11.16700 -10.56815 -9.81065 -9.43204 -9.31711 -8.99366 -8.52378 -6.23631 0.35296 0.51739 1.12476 1.31754 1.47903 1.74346 2.24652 2.65099 2.68519 2.85470 3.12679 3.19387 3.60743 3.76594 3.95442 4.00106 4.01891 4.12723 4.18018 4.19921 4.27293 4.28221 4.41540 4.46007 4.53183 4.57905 4.73566 4.73892 4.77643 4.80356 4.89012 4.95725 4.98085 5.12533 5.15643 5.17137 5.20545 5.25976 5.28739 5.35988 5.52822 5.64606 5.69166 5.72718 6.07039 6.09373 6.12815 6.41941 6.91571 8.60670 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.002092 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.272969 B =13379.125689 C =14095.223159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.127 3.873 3 H 0.052 0.948 4 N -0.683 5.683 5 C 0.074 3.926 6 C -0.085 4.085 7 C -0.069 4.069 8 S -0.220 6.220 9 C -0.523 4.523 10 H 0.050 0.950 11 C 0.036 3.964 12 N -0.922 5.922 13 Si 0.927 3.073 14 H -0.261 1.261 15 H -0.263 1.263 16 H -0.229 1.229 17 C -0.101 4.101 18 C -0.104 4.104 19 C -0.131 4.131 20 C -0.060 4.060 21 C -0.129 4.129 22 C -0.174 4.174 23 C -0.169 4.169 24 C -0.122 4.122 25 C -0.117 4.117 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.345 0.655 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.277 0.723 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.137 0.863 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -9.199 -32.359 33.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.017 3.983 3 H 0.070 0.930 4 N -0.315 5.315 5 C -0.057 4.057 6 C -0.124 4.124 7 C -0.218 4.218 8 S 0.008 5.992 9 C -0.671 4.671 10 H 0.068 0.932 11 C -0.168 4.168 12 N -0.560 5.560 13 Si 0.748 3.252 14 H -0.186 1.186 15 H -0.187 1.187 16 H -0.152 1.152 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.149 4.149 20 C -0.060 4.060 21 C -0.147 4.147 22 C -0.211 4.211 23 C -0.206 4.206 24 C -0.140 4.140 25 C -0.136 4.136 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.164 0.836 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.155 0.845 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.486 -10.455 -31.870 33.633 hybrid contribution 0.616 1.898 0.592 2.081 sum -1.871 -8.557 -31.278 32.482 Atomic orbital electron populations 1.21753 0.93312 1.02306 1.01606 1.20416 0.96247 0.95138 0.86453 0.92979 1.60569 1.33773 1.33183 1.03977 1.21868 1.00820 0.93496 0.89545 1.21167 1.02197 0.97494 0.91523 1.23073 1.02521 1.00814 0.95443 1.83845 1.87536 1.20824 1.07022 1.22352 1.51015 0.96458 0.97242 0.93201 1.25808 0.93978 1.01853 0.95209 1.70037 1.46994 1.34487 1.04489 0.85694 0.80248 0.79934 0.79342 1.18582 1.18719 1.15233 1.19968 1.00353 0.94189 0.95651 1.21114 0.98794 0.94017 0.98256 1.21231 0.99947 1.00533 0.93149 1.19377 0.98432 0.93629 0.94569 1.21122 1.03729 0.92850 0.97007 1.23153 0.99746 0.94055 1.04151 1.23072 0.91235 1.02802 1.03521 1.21127 1.00328 0.93852 0.98731 1.21211 0.98802 1.00434 0.93116 0.92656 0.91665 0.92417 0.83633 0.94837 0.90743 0.90827 0.91302 0.91784 0.91582 0.91401 0.85291 0.85096 0.86095 0.88384 0.87196 0.87242 0.89292 0.84547 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.39 71.98 0.68 -1.70 16 2 C 0.13 2.37 2.82 44.17 0.12 2.49 16 3 H 0.05 0.97 7.66 -2.39 -0.02 0.95 16 4 N -0.68 -14.34 5.69 -495.43 -2.82 -17.16 16 5 C 0.07 1.75 5.48 86.30 0.47 2.23 16 6 C -0.08 -2.48 5.48 30.60 0.17 -2.31 16 7 C -0.07 -2.66 5.67 71.98 0.41 -2.26 16 8 S -0.22 -10.73 19.41 -56.49 -1.10 -11.82 16 9 C -0.52 -31.27 10.04 67.96 0.68 -30.58 16 10 H 0.05 3.24 8.03 -2.91 -0.02 3.22 16 11 C 0.04 2.15 5.50 84.86 0.47 2.62 16 12 N -0.92 -57.27 13.97 21.65 0.30 -56.97 16 13 Si 0.93 44.57 27.74 68.60 1.90 46.48 16 14 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.23 -10.62 6.74 99.48 0.67 -9.95 16 17 C -0.10 -1.84 4.72 -19.86 -0.09 -1.94 16 18 C -0.10 -1.89 9.00 22.27 0.20 -1.69 16 19 C -0.13 -2.19 9.30 22.27 0.21 -1.98 16 20 C -0.06 -0.95 5.61 -19.87 -0.11 -1.06 16 21 C -0.13 -1.57 6.04 -11.54 -0.07 -1.64 16 22 C -0.17 -1.78 9.86 30.59 0.30 -1.48 16 23 C -0.17 -1.84 10.16 30.59 0.31 -1.53 16 24 C -0.12 -1.90 9.74 22.27 0.22 -1.68 16 25 C -0.12 -1.94 9.67 22.27 0.22 -1.73 16 26 H 0.05 1.04 7.45 -2.39 -0.02 1.02 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.34 7.06 7.98 -89.70 -0.72 6.34 16 30 H 0.03 0.79 8.06 -2.39 -0.02 0.77 16 31 H 0.07 1.79 7.44 -2.39 -0.02 1.77 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 36 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.13 2.38 7.71 -2.91 -0.02 2.36 16 38 H 0.13 1.84 6.02 -2.91 -0.02 1.82 16 39 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.10 1.02 6.18 -2.39 -0.01 1.00 16 41 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 45 H 0.13 1.79 8.04 -2.91 -0.02 1.77 16 Total: -1.00 -66.22 378.60 2.67 -63.55 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.21 Total: 20.18 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 4.18 Total: -44.25 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -2.52 Total: -74.13 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.10 Total: -11.82 kcal Total: -66.22 2.67 -63.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419362427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.639 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds